Wall clock time and date at job start Sat Apr 11 2020 01:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.29110 * 126.01083 * 2 1 4 4 N 1.29012 * 110.26147 * 180.02562 * 3 2 1 5 5 C 1.32913 * 108.63865 * 0.02562 * 4 3 2 6 6 C 1.34395 * 126.00710 * 179.97438 * 2 1 3 7 7 C 1.50543 * 129.25835 * 359.85638 * 6 2 1 8 8 C 1.53432 * 108.32465 * 196.44458 * 7 6 2 9 9 H 1.08996 * 109.46185 * 70.30381 * 8 7 6 10 10 C 1.50696 * 109.45651 * 190.25620 * 8 7 6 11 11 O 1.20828 * 120.00033 * 0.07736 * 10 8 7 12 12 O 1.34231 * 120.00266 * 180.08309 * 10 8 7 13 13 C 1.45202 * 117.00038 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.46868 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47065 * 179.97438 * 14 13 12 16 16 S 1.81003 * 109.47225 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99988 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99919 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00020 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99768 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00210 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47194 * 89.99889 * 21 19 17 23 23 H 1.48497 * 109.47593 * 209.99822 * 21 19 17 24 24 H 1.48499 * 109.47351 * 330.00012 * 21 19 17 25 25 C 1.53116 * 109.55255 * 310.27680 * 8 7 6 26 26 C 1.50590 * 129.16003 * 179.79033 * 5 4 3 27 27 H 1.08998 * 109.47344 * 270.02337 * 1 2 3 28 28 H 1.09006 * 109.47295 * 30.02587 * 1 2 3 29 29 H 1.09005 * 109.47120 * 150.02286 * 1 2 3 30 30 H 1.08996 * 109.68754 * 76.73655 * 7 6 2 31 31 H 1.08996 * 109.72047 * 316.17326 * 7 6 2 32 32 H 1.09004 * 109.46620 * 299.99410 * 13 12 10 33 33 H 1.08994 * 109.47471 * 59.99444 * 13 12 10 34 34 H 1.09004 * 109.46941 * 299.99119 * 14 13 12 35 35 H 1.09002 * 109.47954 * 59.99466 * 14 13 12 36 36 H 1.09004 * 109.47217 * 299.99552 * 15 14 13 37 37 H 1.09000 * 109.47604 * 59.99538 * 15 14 13 38 38 H 0.96998 * 119.99941 * 180.02562 * 20 19 17 39 39 H 1.08991 * 109.45354 * 190.10362 * 25 8 7 40 40 H 1.08994 * 109.44915 * 310.04169 * 25 8 7 41 41 H 1.09007 * 109.69275 * 76.88895 * 26 5 4 42 42 H 1.08993 * 109.69415 * 316.30487 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6942 -0.0005 5 6 3.5327 -0.6332 -0.0015 6 6 2.2550 -1.0872 0.0005 7 6 1.8721 -2.5431 0.0041 8 6 3.1013 -3.3641 0.4155 9 1 3.3139 -3.1955 1.4711 10 6 2.8266 -4.8281 0.1866 11 8 1.7605 -5.1801 -0.2601 12 8 3.7661 -5.7410 0.4792 13 6 3.4325 -7.1326 0.2327 14 6 4.6171 -8.0180 0.6244 15 6 4.2655 -9.4843 0.3652 16 16 5.6672 -10.5319 0.8279 17 6 5.0057 -12.1178 0.4382 18 1 4.0057 -12.2026 0.0392 19 6 5.7701 -13.2581 0.6431 20 7 6.9895 -13.1545 1.1280 21 14 5.0691 -14.9393 0.2294 22 1 5.3923 -15.2772 -1.1801 23 1 5.6627 -15.9588 1.1313 24 1 3.5950 -14.9187 0.4079 25 6 4.3084 -2.9347 -0.4229 26 6 4.7468 -1.5241 -0.0067 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5143 29 1 -0.3634 -0.8902 -0.5135 30 1 1.5490 -2.8403 -0.9936 31 1 1.0642 -2.7092 0.7165 32 1 2.5613 -7.4081 0.8271 33 1 3.2091 -7.2708 -0.8251 34 1 5.4886 -7.7426 0.0303 35 1 4.8401 -7.8798 1.6823 36 1 3.3941 -9.7595 0.9595 37 1 4.0423 -9.6230 -0.6926 38 1 7.5238 -13.9513 1.2709 39 1 5.1298 -3.6325 -0.2607 40 1 4.0358 -2.9343 -1.4781 41 1 5.1846 -1.5543 0.9912 42 1 5.4791 -1.1429 -0.7182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811342991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:26:47 Heat of formation + Delta-G solvation = -33.918773 kcal Electronic energy + Delta-G solvation = -24002.043066 eV Core-core repulsion = 20301.952942 eV Total energy + Delta-G solvation = -3700.090124 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.46284 -41.68698 -38.45861 -37.45106 -35.90379 -34.86567 -34.56518 -31.71522 -31.55780 -28.77166 -28.24634 -27.52085 -25.76950 -24.37829 -22.74257 -22.44979 -22.05289 -20.61201 -19.56439 -18.83663 -18.07676 -17.88554 -17.69546 -17.17329 -16.88664 -16.17154 -16.02126 -15.70805 -15.04087 -14.97618 -14.91282 -14.76569 -14.27397 -14.11238 -13.95173 -13.79158 -13.69477 -13.21512 -13.18400 -13.00019 -12.94123 -12.65879 -12.59338 -12.36900 -12.34939 -12.20536 -12.00192 -11.72080 -11.52439 -11.45981 -11.28601 -11.13797 -10.96418 -10.33619 -9.90930 -8.66089 -8.37054 -6.13090 0.50530 1.13044 1.25042 1.35620 1.40394 1.45170 1.48703 1.57198 1.87300 2.28367 2.97590 3.11626 3.26895 3.34087 3.63163 3.67949 3.73937 3.83673 3.89958 4.02506 4.05269 4.17182 4.21461 4.26100 4.36809 4.38285 4.45409 4.57183 4.59361 4.64282 4.71894 4.83052 4.86040 5.00404 5.06354 5.09627 5.16292 5.18343 5.30966 5.41102 5.47940 5.59327 6.18800 6.67342 7.05690 7.42827 8.72122 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.040063 B = 0.001757 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.732130 B =15934.924765 C =16507.710526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.275 5.275 3 N -0.128 5.128 4 N -0.300 5.300 5 C -0.032 4.032 6 C -0.014 4.014 7 C -0.022 4.022 8 C -0.068 4.068 9 H 0.136 0.864 10 C 0.472 3.528 11 O -0.533 6.533 12 O -0.351 6.351 13 C 0.081 3.919 14 C -0.087 4.087 15 C -0.092 4.092 16 S -0.185 6.185 17 C -0.541 4.541 18 H 0.074 0.926 19 C 0.016 3.984 20 N -0.906 5.906 21 Si 0.993 3.007 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.263 1.263 25 C -0.108 4.108 26 C -0.027 4.027 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.272 0.728 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 24.787 -2.124 28.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.068 5.068 3 N -0.105 5.105 4 N -0.163 5.163 5 C -0.173 4.173 6 C -0.150 4.150 7 C -0.061 4.061 8 C -0.088 4.088 9 H 0.153 0.847 10 C 0.316 3.684 11 O -0.423 6.423 12 O -0.268 6.268 13 C 0.005 3.995 14 C -0.125 4.125 15 C -0.241 4.241 16 S 0.043 5.957 17 C -0.688 4.688 18 H 0.092 0.908 19 C -0.189 4.189 20 N -0.542 5.542 21 Si 0.815 3.185 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.188 1.188 25 C -0.146 4.146 26 C -0.066 4.066 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.190 26.440 -1.776 29.169 hybrid contribution -1.712 -2.444 -0.696 3.064 sum -13.901 23.996 -2.472 27.842 Atomic orbital electron populations 1.22772 0.70017 1.07736 1.06947 1.47210 1.10705 1.03813 1.45074 1.78520 0.96399 1.12460 1.23137 1.74759 1.10350 1.13457 1.17735 1.22253 0.96540 0.91001 1.07554 1.21863 0.90984 0.92586 1.09541 1.19964 0.97455 0.83726 1.04986 1.21076 0.97542 0.84806 1.05351 0.84659 1.23882 0.81369 0.89851 0.73270 1.90673 1.26566 1.82574 1.42467 1.86461 1.44704 1.18046 1.77543 1.23022 0.98178 0.76335 1.01915 1.21106 0.97745 0.90130 1.03539 1.23079 1.00817 0.96960 1.03257 1.84634 1.22981 1.02420 1.85654 1.23061 1.03641 0.92132 1.49997 0.90771 1.26045 0.95023 1.03622 0.94228 1.70143 1.09942 1.31234 1.42919 0.85028 0.78643 0.76368 0.78453 1.19350 1.19992 1.18752 1.21662 0.96716 0.96595 0.99599 1.20033 0.91783 0.90311 1.04483 0.87019 0.86880 0.85992 0.88248 0.87595 0.90772 0.90718 0.90121 0.90238 0.91399 0.91357 0.91939 0.87771 0.90634 0.88087 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 11.27 127.77 1.44 1.73 16 2 N -0.28 -4.18 3.73 -356.40 -1.33 -5.51 16 3 N -0.13 -2.88 13.19 37.02 0.49 -2.39 16 4 N -0.30 -7.34 12.40 -48.99 -0.61 -7.95 16 5 C -0.03 -0.59 7.11 41.75 0.30 -0.29 16 6 C -0.01 -0.21 6.76 41.50 0.28 0.07 16 7 C -0.02 -0.24 4.68 29.94 0.14 -0.10 16 8 C -0.07 -0.81 2.60 -11.36 -0.03 -0.84 16 9 H 0.14 1.21 8.12 -2.39 -0.02 1.19 16 10 C 0.47 8.77 7.25 71.23 0.52 9.29 16 11 O -0.53 -12.61 15.57 21.96 0.34 -12.27 16 12 O -0.35 -7.44 9.94 -51.42 -0.51 -7.96 16 13 C 0.08 1.94 5.47 71.98 0.39 2.33 16 14 C -0.09 -2.50 5.60 30.59 0.17 -2.33 16 15 C -0.09 -3.44 5.67 71.98 0.41 -3.03 16 16 S -0.19 -9.49 21.44 -56.49 -1.21 -10.70 16 17 C -0.54 -30.43 9.50 67.95 0.65 -29.79 16 18 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 19 C 0.02 0.89 5.49 84.86 0.47 1.36 16 20 N -0.91 -53.65 13.22 21.65 0.29 -53.37 16 21 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 C -0.11 -1.17 5.19 30.79 0.16 -1.01 16 26 C -0.03 -0.33 6.30 29.97 0.19 -0.14 16 27 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.12 0.04 7.96 -2.38 -0.02 0.02 16 30 H 0.10 1.13 7.78 -2.39 -0.02 1.11 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.75 8.13 -2.38 -0.02 1.73 16 33 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 34 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 2.49 8.14 -2.40 -0.02 2.47 16 38 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 40 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 41 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.26 368.76 5.58 -70.67 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.02 Total: 7.13 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 5.08 Total: -22.76 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -1.16 Total: -69.21 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.17 Total: -20.22 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -9.49 SS G_CDS: -1.21 Total: -10.70 kcal Total: -76.26 5.58 -70.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811342991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.755 kcal (2) G-P(sol) polarization free energy of solvation -76.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds