Wall clock time and date at job start Sat Apr 11 2020 01:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.49901 * 2 1 4 4 C 1.52756 * 109.56875 * 240.02385 * 2 1 3 5 5 N 1.46927 * 109.00732 * 185.55774 * 4 2 1 6 6 C 1.34781 * 120.62682 * 233.58482 * 5 4 2 7 7 O 1.21592 * 120.00215 * 5.66390 * 6 5 4 8 8 C 1.47536 * 120.00096 * 185.67363 * 6 5 4 9 9 C 1.39666 * 120.19566 * 47.95270 * 8 6 5 10 10 C 1.37832 * 119.91325 * 180.02562 * 9 8 6 11 11 C 1.38573 * 120.32703 * 359.74632 * 10 9 8 12 12 C 1.38034 * 120.39984 * 0.51340 * 11 10 9 13 13 C 1.38832 * 120.06982 * 359.49029 * 12 11 10 14 14 O 1.35514 * 120.15892 * 180.23725 * 13 12 11 15 15 C 1.34813 * 117.00376 * 353.63217 * 14 13 12 16 16 H 1.08002 * 119.99428 * 354.34198 * 15 14 13 17 17 C 1.38697 * 120.00368 * 174.32652 * 15 14 13 18 18 N 1.31519 * 119.99780 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00027 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47363 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47085 * 120.00557 * 19 17 15 22 22 H 1.48504 * 109.47498 * 240.00450 * 19 17 15 23 23 C 1.46920 * 118.74230 * 53.30673 * 5 4 2 24 24 C 1.53192 * 108.77739 * 306.64417 * 23 5 4 25 25 C 1.53042 * 109.30956 * 54.63348 * 24 23 5 26 26 F 1.39902 * 109.45984 * 58.65542 * 25 24 23 27 27 F 1.39900 * 109.45843 * 178.61363 * 25 24 23 28 28 H 1.08994 * 109.47222 * 299.94218 * 1 2 3 29 29 H 1.09000 * 109.46604 * 59.94231 * 1 2 3 30 30 H 1.08998 * 109.46854 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.50816 * 65.67178 * 4 2 1 32 32 H 1.09009 * 109.43050 * 305.39094 * 4 2 1 33 33 H 1.07990 * 120.04390 * 0.02562 * 9 8 6 34 34 H 1.08000 * 119.83477 * 179.97438 * 10 9 8 35 35 H 1.07996 * 119.80043 * 180.25608 * 11 10 9 36 36 H 1.07998 * 119.96012 * 179.76485 * 12 11 10 37 37 H 0.96999 * 119.99758 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.58556 * 66.43187 * 23 5 4 39 39 H 1.09003 * 109.58502 * 186.85502 * 23 5 4 40 40 H 1.08996 * 109.49614 * 174.58496 * 24 23 5 41 41 H 1.08994 * 109.49414 * 294.68439 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7191 -1.2468 5 7 3.5047 -0.8296 -1.1690 6 6 4.2813 -0.3864 -2.1775 7 8 3.7813 0.2027 -3.1163 8 6 5.7383 -0.6162 -2.1424 9 6 6.2424 -1.8844 -1.8452 10 6 7.6046 -2.0924 -1.8135 11 6 8.4780 -1.0503 -2.0804 12 6 7.9943 0.2096 -2.3705 13 6 6.6253 0.4378 -2.4068 14 8 6.1484 1.6728 -2.6961 15 6 7.0519 2.6669 -2.8091 16 1 8.0910 2.4805 -2.5811 17 6 6.6472 3.9287 -3.2186 18 7 5.3818 4.1556 -3.4961 19 14 7.8994 5.3059 -3.3758 20 1 9.2450 4.7959 -3.0089 21 1 7.9218 5.7969 -4.7771 22 1 7.5271 6.4198 -2.4670 23 6 4.1053 -1.4266 0.0316 24 6 3.5708 -0.6945 1.2665 25 6 2.0407 -0.7226 1.2487 26 9 1.5991 -2.0500 1.2324 27 9 1.5495 -0.0822 2.3915 28 1 -0.3633 0.5129 0.8904 29 1 -0.3632 0.5147 -0.8895 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7648 -0.1504 -2.1344 32 1 1.6021 -1.7154 -1.2968 33 1 5.5659 -2.7008 -1.6404 34 1 7.9930 -3.0735 -1.5831 35 1 9.5436 -1.2238 -2.0573 36 1 8.6815 1.0176 -2.5737 37 1 5.0988 5.0382 -3.7821 38 1 3.8376 -2.4817 0.0879 39 1 5.1896 -1.3246 -0.0130 40 1 3.9333 -1.1888 2.1677 41 1 3.9159 0.3393 1.2541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811599787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:26:59 Heat of formation + Delta-G solvation = -134.231058 kcal Electronic energy + Delta-G solvation = -28635.982080 eV Core-core repulsion = 24345.408952 eV Total energy + Delta-G solvation = -4290.573129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.128 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -49.02607 -46.97856 -40.05824 -38.63776 -36.66126 -36.44522 -33.67411 -32.41923 -31.57062 -30.57788 -29.04411 -26.91279 -25.51275 -25.20282 -22.89682 -22.61284 -21.57540 -20.56414 -19.24073 -18.12909 -17.55300 -17.28284 -16.69591 -16.45283 -16.02047 -15.82003 -15.01154 -14.78955 -14.44346 -14.38115 -14.00516 -13.71106 -13.63916 -13.52033 -13.29707 -13.15036 -12.98828 -12.92063 -12.80218 -12.46284 -12.33698 -12.05039 -11.80382 -11.76130 -11.43234 -11.25009 -11.21529 -11.12415 -10.96928 -10.78901 -10.48821 -10.36175 -9.70165 -9.11170 -8.95092 -8.44999 -8.29622 -7.40780 -6.52882 -4.13467 1.71759 2.22000 3.07227 3.08328 3.14187 3.15123 3.42378 3.72739 3.87488 4.00226 4.25185 4.34286 4.46155 4.67608 4.98316 5.00436 5.03964 5.07569 5.20626 5.25743 5.35445 5.45704 5.47359 5.55575 5.64170 5.68339 5.74171 5.83086 5.87625 5.95544 6.00561 6.08283 6.11368 6.48898 6.55641 6.75387 6.88594 6.97838 7.17357 7.21265 7.60508 7.72667 7.88222 8.78945 8.89088 9.56907 10.62274 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.004420 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.271565 B = 6333.175797 C = 7574.028070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 H 0.106 0.894 4 C 0.122 3.878 5 N -0.623 5.623 6 C 0.578 3.422 7 O -0.511 6.511 8 C -0.221 4.221 9 C -0.043 4.043 10 C -0.224 4.224 11 C -0.053 4.053 12 C -0.233 4.233 13 C 0.188 3.812 14 O -0.146 6.146 15 C -0.400 4.400 16 H 0.095 0.905 17 C 0.044 3.956 18 N -0.841 5.841 19 Si 0.942 3.058 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.275 1.275 23 C 0.110 3.890 24 C -0.176 4.176 25 C 0.294 3.706 26 F -0.199 7.199 27 F -0.202 7.202 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.272 0.728 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 -10.429 8.993 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 H 0.125 0.875 4 C -0.001 4.001 5 N -0.359 5.359 6 C 0.368 3.632 7 O -0.384 6.384 8 C -0.226 4.226 9 C -0.062 4.062 10 C -0.243 4.243 11 C -0.072 4.072 12 C -0.253 4.253 13 C 0.130 3.870 14 O -0.046 6.046 15 C -0.476 4.476 16 H 0.112 0.888 17 C -0.163 4.163 18 N -0.473 5.473 19 Si 0.766 3.234 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.013 4.013 24 C -0.214 4.214 25 C 0.258 3.742 26 F -0.180 7.180 27 F -0.183 7.183 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.761 -9.784 8.339 13.395 hybrid contribution 0.642 0.622 0.191 0.914 sum -3.119 -9.163 8.530 12.901 Atomic orbital electron populations 1.21756 0.92590 1.02967 1.03318 1.22458 0.98381 1.02107 0.93532 0.87544 1.21415 0.80211 1.00629 0.97853 1.48027 1.05790 1.63350 1.18723 1.18254 0.86400 0.77010 0.81506 1.90815 1.74695 1.38787 1.34126 1.18682 0.91316 0.94341 1.18274 1.20768 0.95382 0.94195 0.95817 1.20493 0.92910 0.98883 1.12051 1.20912 0.98700 0.92445 0.95129 1.21157 0.94943 0.98336 1.10814 1.19201 0.91090 0.86003 0.90705 1.84046 1.35545 1.12117 1.72853 1.21468 0.90743 0.87481 1.47918 0.88763 1.25377 0.97220 0.97926 0.95798 1.70092 1.14788 1.22906 1.39559 0.85643 0.79429 0.79824 0.78508 1.18940 1.19964 1.20011 1.21783 1.00654 0.96416 0.82488 1.22972 0.91765 1.05443 1.01266 1.21083 0.93479 0.75653 0.84028 1.92966 1.91225 1.37013 1.96813 1.92989 1.89739 1.81892 1.53637 0.91584 0.90919 0.91762 0.87591 0.91050 0.86582 0.87078 0.87086 0.85005 0.91819 0.90854 0.87225 0.88409 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.96 37.16 0.33 -1.28 16 2 C -0.14 -1.88 2.51 -90.72 -0.23 -2.11 16 3 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 4 C 0.12 1.76 5.50 -3.93 -0.02 1.74 16 5 N -0.62 -10.21 2.98 -174.26 -0.52 -10.73 16 6 C 0.58 12.30 6.96 -12.47 -0.09 12.21 16 7 O -0.51 -13.23 15.91 -4.90 -0.08 -13.31 16 8 C -0.22 -4.59 4.85 -104.81 -0.51 -5.10 16 9 C -0.04 -0.71 7.54 -39.20 -0.30 -1.00 16 10 C -0.22 -3.46 10.02 -39.61 -0.40 -3.86 16 11 C -0.05 -0.89 10.03 -39.53 -0.40 -1.29 16 12 C -0.23 -4.79 9.12 -39.44 -0.36 -5.15 16 13 C 0.19 4.46 6.63 -38.60 -0.26 4.21 16 14 O -0.15 -4.14 8.78 -9.37 -0.08 -4.23 16 15 C -0.40 -10.97 9.43 30.90 0.29 -10.67 16 16 H 0.10 2.35 5.32 -52.49 -0.28 2.07 16 17 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 18 N -0.84 -24.74 13.67 55.48 0.76 -23.98 16 19 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C 0.11 1.42 5.03 -3.71 -0.02 1.40 16 24 C -0.18 -2.10 5.62 -26.61 -0.15 -2.25 16 25 C 0.29 3.72 1.63 -26.69 -0.04 3.67 16 26 F -0.20 -2.54 15.64 2.25 0.04 -2.50 16 27 F -0.20 -2.71 16.49 2.25 0.04 -2.68 16 28 H 0.07 0.70 7.77 -51.93 -0.40 0.29 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 31 H 0.11 1.73 7.00 -51.93 -0.36 1.37 16 32 H 0.07 0.90 7.92 -51.92 -0.41 0.49 16 33 H 0.12 1.57 7.31 -52.49 -0.38 1.19 16 34 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.13 2.70 5.73 -52.49 -0.30 2.39 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 39 H 0.11 1.47 5.14 -51.93 -0.27 1.20 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -32.92 342.59 -6.84 -39.76 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.90 Total: 5.84 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.23 Total: -8.39 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.24 Total: -34.71 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.16 Total: -17.53 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.07 Total: -5.18 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.92 -6.84 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811599787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.474 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds