Wall clock time and date at job start Sat Apr 11 2020 01:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.32217 * 119.81578 * 2 1 4 4 O 1.21254 * 122.89952 * 359.96675 * 3 2 1 5 5 C 1.51119 * 114.20139 * 180.27328 * 3 2 1 6 6 S 1.82381 * 103.49564 * 359.73448 * 5 3 2 7 7 C 1.36750 * 119.82042 * 179.75337 * 2 1 3 8 8 C 1.36441 * 126.26180 * 0.02663 * 7 2 1 9 9 C 1.40399 * 119.99856 * 179.71576 * 8 7 2 10 10 O 1.21900 * 119.99861 * 5.01191 * 9 8 7 11 11 N 1.34775 * 120.00146 * 185.01998 * 9 8 7 12 12 C 1.47082 * 120.88151 * 354.71738 * 11 9 8 13 13 C 1.53241 * 108.52177 * 231.16698 * 12 11 9 14 14 N 1.46894 * 109.33767 * 306.16742 * 13 12 11 15 15 C 1.46898 * 111.00005 * 187.25423 * 14 13 12 16 16 C 1.50697 * 109.47552 * 169.99979 * 15 14 13 17 17 H 1.08002 * 119.99712 * 359.73146 * 16 15 14 18 18 C 1.37869 * 120.00345 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00265 * 359.73094 * 18 16 15 20 20 Si 1.86806 * 120.00229 * 179.72551 * 18 16 15 21 21 H 1.48505 * 109.46842 * 60.00386 * 20 18 16 22 22 H 1.48501 * 109.47273 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47199 * 300.00591 * 20 18 16 24 24 C 1.46903 * 111.27068 * 63.10722 * 14 13 12 25 25 C 1.47071 * 120.88131 * 174.69803 * 11 9 8 26 26 H 1.09001 * 109.46947 * 270.24517 * 1 2 3 27 27 H 1.08991 * 109.47216 * 30.24609 * 1 2 3 28 28 H 1.08998 * 109.46791 * 150.24587 * 1 2 3 29 29 H 1.09007 * 110.61464 * 241.23281 * 5 3 2 30 30 H 1.08994 * 110.62079 * 118.23930 * 5 3 2 31 31 H 1.08002 * 120.00653 * 359.70792 * 8 7 2 32 32 H 1.08996 * 109.62802 * 111.45546 * 12 11 9 33 33 H 1.09008 * 109.78518 * 350.96941 * 12 11 9 34 34 H 1.09000 * 109.48813 * 186.21021 * 13 12 11 35 35 H 1.08997 * 109.49129 * 66.12652 * 13 12 11 36 36 H 1.08999 * 109.46949 * 49.99696 * 15 14 13 37 37 H 1.08998 * 109.47298 * 290.00293 * 15 14 13 38 38 H 0.97003 * 120.00794 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.48906 * 56.84971 * 24 14 13 40 40 H 1.08996 * 109.49672 * 176.93406 * 24 14 13 41 41 H 1.09000 * 109.63077 * 248.53988 * 25 11 9 42 42 H 1.09001 * 109.63233 * 8.92873 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1472 0.0000 4 8 1.5666 2.2248 -0.0006 5 6 3.6263 0.9993 -0.0066 6 16 3.8764 -0.8073 -0.0037 7 6 2.1450 -1.1864 0.0051 8 6 1.5919 -2.4337 0.0100 9 6 2.4188 -3.5683 0.0089 10 8 3.6280 -3.4413 0.0959 11 7 1.8756 -4.7979 -0.0885 12 6 0.4163 -4.9816 -0.0785 13 6 0.0662 -6.0410 0.9719 14 7 0.8438 -7.2597 0.7115 15 6 0.4135 -8.3563 1.5891 16 6 1.0510 -9.6437 1.1340 17 1 1.7066 -9.6478 0.2757 18 6 0.7935 -10.8173 1.8102 19 7 -0.0044 -10.8124 2.8556 20 14 1.5777 -12.4145 1.2414 21 1 3.0563 -12.2866 1.2953 22 1 1.1437 -13.5228 2.1294 23 1 1.1564 -12.7039 -0.1528 24 6 2.2853 -7.0114 0.8475 25 6 2.7263 -5.9916 -0.2079 26 1 -0.3633 0.0044 1.0277 27 1 -0.3633 0.8877 -0.5176 28 1 -0.3633 -0.8922 -0.5100 29 1 4.0600 1.4483 0.8871 30 1 4.0519 1.4443 -0.9060 31 1 0.5180 -2.5482 0.0148 32 1 0.0826 -5.3156 -1.0609 33 1 -0.0723 -4.0403 0.1738 34 1 -0.9981 -6.2698 0.9168 35 1 0.3062 -5.6617 1.9651 36 1 -0.6714 -8.4526 1.5449 37 1 0.7177 -8.1425 2.6136 38 1 -0.1860 -11.6381 3.3312 39 1 2.4943 -6.6185 1.8425 40 1 2.8304 -7.9440 0.7023 41 1 2.6146 -6.4229 -1.2027 42 1 3.7682 -5.7169 -0.0429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827479724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:27:29 Heat of formation + Delta-G solvation = -33.236357 kcal Electronic energy + Delta-G solvation = -25149.348969 eV Core-core repulsion = 21449.288437 eV Total energy + Delta-G solvation = -3700.060532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.21702 -41.23741 -39.07059 -38.08190 -35.93431 -34.38130 -33.18178 -32.13959 -31.71505 -30.01980 -28.03451 -27.24490 -25.58080 -24.25942 -23.72524 -22.04095 -21.07474 -20.10148 -19.13848 -18.51759 -18.24063 -17.84154 -17.63809 -16.97438 -16.68587 -16.33600 -16.00906 -15.84553 -15.45741 -15.35408 -15.21425 -14.94631 -14.83646 -14.33657 -14.05600 -13.88204 -13.64218 -13.39732 -13.15019 -12.96918 -12.75097 -12.67653 -12.52540 -12.33263 -12.28312 -12.20844 -12.10872 -11.71369 -11.57625 -11.28593 -10.62770 -10.57260 -10.05142 -9.74573 -9.05426 -8.76840 -8.19457 -6.29267 -0.38791 0.07062 0.69720 1.15752 1.37110 1.43460 1.45962 1.53698 2.17582 2.29955 2.41901 2.80241 3.13091 3.26967 3.76670 3.98213 4.05068 4.07190 4.11248 4.14613 4.23305 4.31149 4.36408 4.39743 4.49472 4.62112 4.66702 4.74082 4.83012 4.89559 4.91595 4.98672 5.07454 5.20716 5.27566 5.53765 5.61217 5.65686 6.05186 6.24134 6.30346 6.51245 6.62640 6.86406 7.18551 7.40571 8.91396 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.032649 B = 0.002429 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.396183 B =11523.015497 C =12112.287595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.545 5.545 3 C 0.523 3.477 4 O -0.517 6.517 5 C -0.177 4.177 6 S -0.010 6.010 7 C 0.191 3.809 8 C -0.260 4.260 9 C 0.555 3.445 10 O -0.578 6.578 11 N -0.608 5.608 12 C 0.122 3.878 13 C 0.035 3.965 14 N -0.539 5.539 15 C 0.209 3.791 16 C -0.524 4.524 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.269 1.269 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.057 3.943 25 C 0.130 3.870 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.165 0.835 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.017 0.983 36 H 0.011 0.989 37 H -0.043 1.043 38 H 0.264 0.736 39 H 0.007 0.993 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 24.040 -7.930 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.267 5.267 3 C 0.312 3.688 4 O -0.393 6.393 5 C -0.327 4.327 6 S 0.233 5.767 7 C -0.024 4.024 8 C -0.297 4.297 9 C 0.349 3.651 10 O -0.463 6.463 11 N -0.340 5.340 12 C -0.001 4.001 13 C -0.094 4.094 14 N -0.264 5.264 15 C 0.083 3.917 16 C -0.562 4.562 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.072 4.072 25 C 0.007 3.993 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.183 0.817 30 H 0.185 0.815 31 H 0.196 0.804 32 H 0.107 0.893 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.036 0.964 36 H 0.029 0.971 37 H -0.025 1.025 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.340 23.940 -8.250 25.541 hybrid contribution -0.927 -0.409 1.195 1.567 sum 2.412 23.531 -7.054 24.684 Atomic orbital electron populations 1.22407 0.74997 1.06237 1.05135 1.44786 1.10838 1.04213 1.66819 1.20166 0.90284 0.83109 0.75256 1.90813 1.72921 1.26754 1.48806 1.24850 0.94603 1.00510 1.12690 1.88303 0.99822 0.99523 1.89065 1.22419 0.95150 0.88555 0.96319 1.20712 1.02104 0.87942 1.18965 1.16566 0.87706 0.83833 0.76953 1.90767 1.16293 1.85810 1.53467 1.48006 1.08124 1.05701 1.72162 1.22043 0.78719 0.99384 0.99918 1.22572 0.99244 0.90690 0.96909 1.62013 1.03460 1.06020 1.54894 1.19356 0.94895 0.89010 0.88420 1.21448 1.28337 0.92901 1.13519 0.91653 1.25890 0.95818 1.02925 0.94959 1.70070 1.37955 1.28767 1.20746 0.85466 0.78886 0.78086 0.78372 1.19386 1.21072 1.19126 1.22257 0.89971 0.98841 0.96121 1.21561 0.95042 0.83739 0.98960 0.89579 0.89045 0.87033 0.81702 0.81477 0.80436 0.89337 0.85998 0.89212 0.96421 0.97099 1.02544 0.92720 0.97446 0.90464 0.90165 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.06 127.77 1.29 1.82 16 2 N -0.55 -8.34 2.95 -660.57 -1.95 -10.29 16 3 C 0.52 8.67 7.79 88.18 0.69 9.36 16 4 O -0.52 -11.32 16.94 -2.95 -0.05 -11.37 16 5 C -0.18 -2.05 7.36 71.37 0.53 -1.52 16 6 S -0.01 -0.18 20.66 -56.49 -1.17 -1.35 16 7 C 0.19 3.51 7.00 83.51 0.58 4.10 16 8 C -0.26 -4.93 8.54 22.38 0.19 -4.74 16 9 C 0.56 14.93 7.42 84.77 0.63 15.56 16 10 O -0.58 -19.01 13.58 -4.99 -0.07 -19.08 16 11 N -0.61 -16.57 3.01 -829.71 -2.50 -19.07 16 12 C 0.12 2.71 6.44 86.35 0.56 3.27 16 13 C 0.03 1.09 5.62 86.38 0.49 1.58 16 14 N -0.54 -22.07 4.62 -899.83 -4.16 -26.23 16 15 C 0.21 10.85 4.72 85.56 0.40 11.26 16 16 C -0.52 -29.00 8.40 25.60 0.22 -28.79 16 17 H 0.07 3.52 7.14 -2.91 -0.02 3.50 16 18 C 0.00 0.12 5.46 84.65 0.46 0.58 16 19 N -0.93 -55.64 13.29 21.44 0.28 -55.36 16 20 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 C 0.06 2.21 5.46 86.38 0.47 2.68 16 25 C 0.13 4.07 6.61 86.35 0.57 4.64 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.94 7.50 -2.39 -0.02 0.92 16 28 H 0.11 0.60 6.61 -2.39 -0.02 0.58 16 29 H 0.17 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.17 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.18 2.10 4.47 -2.91 -0.01 2.09 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 1.70 5.47 -2.38 -0.01 1.69 16 34 H 0.09 2.66 7.99 -2.39 -0.02 2.64 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.01 0.60 7.97 -2.39 -0.02 0.58 16 37 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 38 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.08 3.23 6.67 -2.39 -0.02 3.22 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.09 2.79 7.04 -2.39 -0.02 2.77 16 Total: -1.00 -73.88 351.07 0.54 -73.35 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.04 Total: 3.92 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 7.07 Total: 19.80 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -8.32 Total: -110.95 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.12 Total: -30.45 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -1.17 Total: -1.35 kcal Total: -73.88 0.54 -73.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827479724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.111 kcal (2) G-P(sol) polarization free energy of solvation -73.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds