Wall clock time and date at job start Sat Apr 11 2020 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40447 * 126.82323 * 2 1 4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3 7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3 8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2 9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3 10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4 11 11 C 1.50702 * 109.46950 * 89.97979 * 10 9 8 12 12 O 1.20822 * 120.00230 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99861 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99990 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47190 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47163 * 180.02562 * 15 14 13 17 17 S 1.80998 * 109.47198 * 180.02562 * 16 15 14 18 18 C 1.76201 * 100.00159 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99880 * 359.97438 * 18 17 16 20 20 C 1.38791 * 119.99970 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99894 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00305 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47044 * 89.99788 * 22 20 18 24 24 H 1.48495 * 109.47342 * 210.00102 * 22 20 18 25 25 H 1.48500 * 109.46984 * 329.99867 * 22 20 18 26 26 H 1.09002 * 109.47241 * 90.02243 * 1 2 3 27 27 H 1.08996 * 109.47088 * 210.02752 * 1 2 3 28 28 H 1.09003 * 109.47136 * 330.02773 * 1 2 3 29 29 H 1.09001 * 115.54690 * 154.39168 * 5 4 3 30 30 H 1.08999 * 117.49922 * 359.97438 * 6 5 4 31 31 H 1.09000 * 117.49232 * 145.01679 * 6 5 4 32 32 H 1.08995 * 117.49902 * 214.98202 * 7 5 4 33 33 H 1.09002 * 117.49700 * 359.97241 * 7 5 4 34 34 H 1.09003 * 109.47186 * 209.97910 * 10 9 8 35 35 H 1.08998 * 109.47075 * 329.97660 * 10 9 8 36 36 H 1.08993 * 109.47486 * 299.99872 * 14 13 11 37 37 H 1.09001 * 109.46896 * 60.00228 * 14 13 11 38 38 H 1.08993 * 109.47021 * 300.00426 * 15 14 13 39 39 H 1.09001 * 109.46796 * 60.00435 * 15 14 13 40 40 H 1.09005 * 109.47016 * 300.00221 * 16 15 14 41 41 H 1.09001 * 109.47023 * 60.00435 * 16 15 14 42 42 H 0.97002 * 119.99873 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5349 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0346 0.2074 7 6 4.9764 2.4893 -1.1729 8 7 3.5096 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0002 10 6 1.8246 -2.5156 -0.0006 11 6 1.6765 -2.9964 1.4200 12 8 1.9098 -2.2472 2.3387 13 8 1.2865 -4.2572 1.6645 14 6 1.1658 -4.6516 3.0567 15 6 0.7134 -6.1111 3.1360 16 6 0.5856 -6.5264 4.6030 17 16 0.0512 -8.2532 4.6968 18 6 -0.0125 -8.4592 6.4455 19 1 0.2428 -7.6357 7.0960 20 6 -0.3908 -9.6798 6.9871 21 7 -0.4380 -9.8339 8.2936 22 14 -0.8331 -11.1040 5.8622 23 1 0.3870 -11.8961 5.5635 24 1 -1.8347 -11.9716 6.5324 25 1 -1.4030 -10.5765 4.5965 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8903 0.5134 29 1 5.6667 1.0633 0.4268 30 1 3.5866 3.4088 0.3420 31 1 5.3748 3.5597 0.7680 32 1 5.9961 2.6559 -1.5198 33 1 4.2084 2.5044 -1.9462 34 1 0.8667 -2.5989 -0.5141 35 1 2.5669 -3.1257 -0.5152 36 1 2.1315 -4.5428 3.5503 37 1 0.4311 -4.0165 3.5518 38 1 -0.2523 -6.2194 2.6426 39 1 1.4478 -6.7464 2.6408 40 1 1.5513 -6.4179 5.0968 41 1 -0.1490 -5.8910 5.0978 42 1 -0.7027 -10.6868 8.6721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829909759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:27:39 Heat of formation + Delta-G solvation = 16.151778 kcal Electronic energy + Delta-G solvation = -23577.298127 eV Core-core repulsion = 19879.379225 eV Total energy + Delta-G solvation = -3697.918902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.60495 -40.63459 -37.66160 -36.96177 -34.32821 -33.78357 -33.07914 -32.48573 -29.69856 -27.80774 -26.59291 -25.63045 -24.14562 -22.80993 -22.40609 -21.50348 -20.66244 -20.14521 -18.15949 -17.52606 -17.43307 -16.93978 -16.77533 -16.14230 -15.73300 -15.17436 -15.10024 -15.02475 -14.46702 -14.23011 -13.93209 -13.71273 -13.31062 -13.23323 -12.86853 -12.65904 -12.55268 -12.48555 -12.10384 -11.88801 -11.60994 -11.31255 -11.30715 -11.14897 -11.03375 -10.92249 -10.91432 -10.46509 -10.34204 -10.32380 -10.06490 -9.86062 -9.56842 -9.05498 -8.65698 -7.01987 -6.32824 -4.06709 1.06520 1.81235 1.86410 2.15577 2.59295 2.97193 3.26684 3.33145 3.40871 3.51290 3.57404 3.90465 3.99127 4.26683 4.40098 4.43874 4.46362 4.57093 4.63609 4.73731 4.74786 4.79324 4.93866 4.95150 5.04833 5.06008 5.12046 5.24564 5.30276 5.41329 5.60681 5.64722 5.68800 5.75151 5.91615 5.95954 6.05399 6.22167 6.26697 6.34529 6.49394 7.42586 7.73805 7.90655 8.39940 9.12362 10.76529 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.034259 B = 0.001716 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.102122 B =16311.596377 C =16551.537275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.370 5.370 3 N -0.310 5.310 4 C 0.257 3.743 5 C -0.072 4.072 6 C -0.160 4.160 7 C -0.158 4.158 8 N -0.521 5.521 9 C 0.291 3.709 10 C -0.037 4.037 11 C 0.465 3.535 12 O -0.495 6.495 13 O -0.351 6.351 14 C 0.073 3.927 15 C -0.101 4.101 16 C -0.085 4.085 17 S -0.205 6.205 18 C -0.506 4.506 19 H 0.089 0.911 20 C 0.092 3.908 21 N -0.880 5.880 22 Si 0.862 3.138 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.238 1.238 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 22.165 -22.445 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.161 5.161 3 N -0.138 5.138 4 C -0.024 4.024 5 C -0.093 4.093 6 C -0.198 4.198 7 C -0.197 4.197 8 N -0.248 5.248 9 C 0.014 3.986 10 C -0.077 4.077 11 C 0.305 3.695 12 O -0.382 6.382 13 O -0.267 6.267 14 C -0.001 4.001 15 C -0.139 4.139 16 C -0.234 4.234 17 S 0.023 5.977 18 C -0.654 4.654 19 H 0.107 0.893 20 C -0.116 4.116 21 N -0.516 5.516 22 Si 0.687 3.313 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.162 1.162 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.150 0.850 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.541 22.030 -22.775 32.010 hybrid contribution -0.236 -0.105 1.075 1.106 sum 4.305 21.925 -21.700 31.147 Atomic orbital electron populations 1.22023 0.73527 1.05414 1.03969 1.50115 1.07936 1.03678 1.54325 1.77959 1.01328 1.07261 1.27244 1.23069 0.92476 0.89027 0.97831 1.20079 0.93398 0.89951 1.05871 1.23054 1.03865 0.93571 0.99307 1.23042 1.03255 1.01661 0.91720 1.70217 1.19211 1.11084 1.24329 1.23204 0.86363 0.91211 0.97832 1.19691 1.06497 0.88020 0.93474 1.22967 0.74187 0.80858 0.91499 1.90756 1.45111 1.55903 1.46438 1.86440 1.78267 1.29406 1.32590 1.23300 1.02490 0.96945 0.77408 1.21339 1.03314 0.92317 0.96954 1.22951 1.03873 0.99950 0.96588 1.84155 1.88979 1.10857 1.13723 1.22120 1.53359 1.02513 0.87363 0.89302 1.24792 0.93738 0.98134 0.94943 1.69940 1.45840 1.25663 1.10176 0.86669 0.79592 0.82698 0.82375 1.19300 1.20021 1.16164 0.89696 0.89089 0.88498 0.85007 0.87860 0.87747 0.87667 0.88595 0.85156 0.83566 0.90743 0.90899 0.90177 0.90096 0.90965 0.90980 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 11.16 59.85 0.67 1.19 16 2 N -0.37 -3.80 4.04 -65.09 -0.26 -4.06 16 3 N -0.31 -3.76 12.24 32.42 0.40 -3.37 16 4 C 0.26 3.15 7.69 -156.85 -1.21 1.95 16 5 C -0.07 -0.66 6.33 -91.77 -0.58 -1.24 16 6 C -0.16 -1.15 10.14 -26.69 -0.27 -1.42 16 7 C -0.16 -1.07 10.24 -26.70 -0.27 -1.34 16 8 N -0.52 -6.79 11.19 -8.16 -0.09 -6.88 16 9 C 0.29 3.14 6.48 -155.70 -1.01 2.13 16 10 C -0.04 -0.27 5.94 -29.03 -0.17 -0.44 16 11 C 0.46 5.17 7.95 36.01 0.29 5.46 16 12 O -0.50 -7.41 15.78 -18.75 -0.30 -7.71 16 13 O -0.35 -4.02 10.22 -39.25 -0.40 -4.43 16 14 C 0.07 0.94 5.47 37.16 0.20 1.14 16 15 C -0.10 -1.44 5.60 -26.73 -0.15 -1.59 16 16 C -0.09 -1.57 5.67 37.16 0.21 -1.36 16 17 S -0.20 -4.83 19.41 -107.50 -2.09 -6.92 16 18 C -0.51 -14.45 10.04 30.94 0.31 -14.14 16 19 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 20 C 0.09 2.67 5.50 -17.43 -0.10 2.57 16 21 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 22 Si 0.86 21.11 27.74 -169.99 -4.71 16.40 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.39 7.72 -51.93 -0.40 -0.01 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 0.84 7.88 -51.93 -0.41 0.43 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.13 0.45 7.76 -51.93 -0.40 0.04 16 35 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 37 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.34 8.14 -51.91 -0.42 0.91 16 41 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -36.43 379.25 -9.33 -45.76 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.28 Total: -1.80 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.08 Total: -7.10 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.82 Total: -39.92 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.70 Total: -12.13 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.40 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -2.09 Total: -6.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.43 -9.33 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829909759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.910 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds