Wall clock time and date at job start Sat Apr 11 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40447 * 126.82323 * 2 1 4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3 7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3 8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2 9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3 10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4 11 11 C 1.50702 * 109.46950 * 89.97979 * 10 9 8 12 12 O 1.20822 * 120.00230 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99861 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99990 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47190 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47163 * 180.02562 * 15 14 13 17 17 S 1.80998 * 109.47198 * 180.02562 * 16 15 14 18 18 C 1.76201 * 100.00159 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99880 * 359.97438 * 18 17 16 20 20 C 1.38791 * 119.99970 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99894 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00305 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47044 * 89.99788 * 22 20 18 24 24 H 1.48495 * 109.47342 * 210.00102 * 22 20 18 25 25 H 1.48500 * 109.46984 * 329.99867 * 22 20 18 26 26 H 1.09002 * 109.47241 * 90.02243 * 1 2 3 27 27 H 1.08996 * 109.47088 * 210.02752 * 1 2 3 28 28 H 1.09003 * 109.47136 * 330.02773 * 1 2 3 29 29 H 1.09001 * 115.54690 * 154.39168 * 5 4 3 30 30 H 1.08999 * 117.49922 * 359.97438 * 6 5 4 31 31 H 1.09000 * 117.49232 * 145.01679 * 6 5 4 32 32 H 1.08995 * 117.49902 * 214.98202 * 7 5 4 33 33 H 1.09002 * 117.49700 * 359.97241 * 7 5 4 34 34 H 1.09003 * 109.47186 * 209.97910 * 10 9 8 35 35 H 1.08998 * 109.47075 * 329.97660 * 10 9 8 36 36 H 1.08993 * 109.47486 * 299.99872 * 14 13 11 37 37 H 1.09001 * 109.46896 * 60.00228 * 14 13 11 38 38 H 1.08993 * 109.47021 * 300.00426 * 15 14 13 39 39 H 1.09001 * 109.46796 * 60.00435 * 15 14 13 40 40 H 1.09005 * 109.47016 * 300.00221 * 16 15 14 41 41 H 1.09001 * 109.47023 * 60.00435 * 16 15 14 42 42 H 0.97002 * 119.99873 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5349 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0346 0.2074 7 6 4.9764 2.4893 -1.1729 8 7 3.5096 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0002 10 6 1.8246 -2.5156 -0.0006 11 6 1.6765 -2.9964 1.4200 12 8 1.9098 -2.2472 2.3387 13 8 1.2865 -4.2572 1.6645 14 6 1.1658 -4.6516 3.0567 15 6 0.7134 -6.1111 3.1360 16 6 0.5856 -6.5264 4.6030 17 16 0.0512 -8.2532 4.6968 18 6 -0.0125 -8.4592 6.4455 19 1 0.2428 -7.6357 7.0960 20 6 -0.3908 -9.6798 6.9871 21 7 -0.4380 -9.8339 8.2936 22 14 -0.8331 -11.1040 5.8622 23 1 0.3870 -11.8961 5.5635 24 1 -1.8347 -11.9716 6.5324 25 1 -1.4030 -10.5765 4.5965 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8903 0.5134 29 1 5.6667 1.0633 0.4268 30 1 3.5866 3.4088 0.3420 31 1 5.3748 3.5597 0.7680 32 1 5.9961 2.6559 -1.5198 33 1 4.2084 2.5044 -1.9462 34 1 0.8667 -2.5989 -0.5141 35 1 2.5669 -3.1257 -0.5152 36 1 2.1315 -4.5428 3.5503 37 1 0.4311 -4.0165 3.5518 38 1 -0.2523 -6.2194 2.6426 39 1 1.4478 -6.7464 2.6408 40 1 1.5513 -6.4179 5.0968 41 1 -0.1490 -5.8910 5.0978 42 1 -0.7027 -10.6868 8.6721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829909759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:27:38 Heat of formation + Delta-G solvation = -5.881511 kcal Electronic energy + Delta-G solvation = -23578.253562 eV Core-core repulsion = 19879.379225 eV Total energy + Delta-G solvation = -3698.874337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.36523 -41.57218 -38.30385 -37.91370 -35.04075 -34.93292 -34.68562 -33.85577 -30.46830 -28.47608 -28.08654 -27.47082 -24.81558 -23.48370 -23.24036 -22.66143 -21.42405 -20.87939 -19.65341 -18.93637 -18.23773 -17.88461 -17.65182 -17.10245 -16.87397 -16.41287 -16.19306 -16.10065 -15.68608 -15.03558 -14.93329 -14.62942 -14.44158 -14.19301 -14.16838 -13.95276 -13.39342 -13.36126 -13.14413 -13.04318 -12.78114 -12.62296 -12.42902 -12.42148 -12.28062 -11.96915 -11.82622 -11.65218 -11.54942 -11.50270 -11.16580 -11.14136 -10.87898 -10.60730 -10.26033 -9.00346 -8.52139 -6.24444 0.29348 0.99887 1.04326 1.19432 1.33757 1.37979 1.48803 1.67391 1.92893 2.24925 2.65383 2.68076 2.86045 2.95006 3.26010 3.36977 3.58548 3.82809 3.85498 3.94100 3.99520 4.03492 4.10616 4.19702 4.27535 4.30229 4.32445 4.48327 4.51048 4.56236 4.65258 4.73099 4.87954 4.99908 5.07418 5.08092 5.19971 5.21377 5.28869 5.35058 5.68865 5.69396 6.09915 6.53516 6.91325 6.95196 8.60905 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.034259 B = 0.001716 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.102122 B =16311.596377 C =16551.537275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.372 5.372 3 N -0.335 5.335 4 C 0.241 3.759 5 C -0.098 4.098 6 C -0.153 4.153 7 C -0.141 4.141 8 N -0.557 5.557 9 C 0.282 3.718 10 C -0.028 4.028 11 C 0.470 3.530 12 O -0.538 6.538 13 O -0.343 6.343 14 C 0.079 3.921 15 C -0.087 4.087 16 C -0.076 4.076 17 S -0.202 6.202 18 C -0.528 4.528 19 H 0.049 0.951 20 C 0.037 3.963 21 N -0.923 5.923 22 Si 0.927 3.073 23 H -0.261 1.261 24 H -0.264 1.264 25 H -0.225 1.225 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.178 0.822 35 H 0.169 0.831 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 21.960 -25.359 33.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.162 5.162 3 N -0.164 5.164 4 C -0.040 4.040 5 C -0.118 4.118 6 C -0.191 4.191 7 C -0.179 4.179 8 N -0.285 5.285 9 C 0.006 3.994 10 C -0.067 4.067 11 C 0.312 3.688 12 O -0.428 6.428 13 O -0.259 6.259 14 C 0.004 3.996 15 C -0.125 4.125 16 C -0.225 4.225 17 S 0.026 5.974 18 C -0.676 4.676 19 H 0.068 0.932 20 C -0.168 4.168 21 N -0.560 5.560 22 Si 0.748 3.252 23 H -0.186 1.186 24 H -0.188 1.188 25 H -0.148 1.148 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.152 0.848 30 H 0.108 0.892 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.195 0.805 35 H 0.187 0.813 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.027 21.833 -25.706 33.966 hybrid contribution -0.074 0.096 2.012 2.016 sum 3.953 21.929 -23.694 32.526 Atomic orbital electron populations 1.22411 0.71181 1.06193 1.06082 1.50411 1.09257 1.03118 1.53448 1.77872 1.01694 1.08650 1.28150 1.23604 0.93361 0.89313 0.97693 1.20270 0.92724 0.90649 1.08203 1.23096 1.03808 0.92236 0.99990 1.23100 1.04276 0.99570 0.90996 1.70191 1.20887 1.11700 1.25737 1.23734 0.86085 0.92527 0.97104 1.19956 1.09556 0.86073 0.91146 1.23650 0.72556 0.79980 0.92571 1.90756 1.47109 1.56824 1.48107 1.86431 1.78270 1.29810 1.31349 1.23039 1.02227 0.95934 0.78399 1.21154 1.04300 0.93338 0.93736 1.22991 1.03336 0.96348 0.99816 1.83757 1.89417 1.15126 1.09097 1.22376 1.53152 1.01683 0.90380 0.93229 1.25817 0.93440 1.01023 0.96507 1.70049 1.46921 1.26818 1.12252 0.85691 0.79779 0.79034 0.80704 1.18586 1.18838 1.14777 0.86863 0.87490 0.88605 0.84806 0.89169 0.85762 0.85339 0.89318 0.80508 0.81331 0.91351 0.90682 0.89001 0.89399 0.91385 0.91061 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 11.16 127.77 1.43 2.17 16 2 N -0.37 -7.22 4.04 -359.86 -1.45 -8.68 16 3 N -0.33 -8.15 12.24 -51.33 -0.63 -8.78 16 4 C 0.24 5.99 7.69 138.63 1.07 7.05 16 5 C -0.10 -1.79 6.33 -11.54 -0.07 -1.87 16 6 C -0.15 -2.14 10.14 30.62 0.31 -1.83 16 7 C -0.14 -1.79 10.24 30.62 0.31 -1.47 16 8 N -0.56 -14.41 11.19 -179.72 -2.01 -16.42 16 9 C 0.28 5.71 6.48 138.23 0.90 6.61 16 10 C -0.03 -0.33 5.94 29.10 0.17 -0.16 16 11 C 0.47 9.46 7.95 71.24 0.57 10.03 16 12 O -0.54 -15.71 15.78 21.98 0.35 -15.36 16 13 O -0.34 -6.92 10.22 -51.38 -0.53 -7.45 16 14 C 0.08 1.88 5.47 71.98 0.39 2.28 16 15 C -0.09 -2.28 5.60 30.60 0.17 -2.11 16 16 C -0.08 -2.74 5.67 71.98 0.41 -2.33 16 17 S -0.20 -9.30 19.41 -56.49 -1.10 -10.40 16 18 C -0.53 -30.73 10.04 67.95 0.68 -30.04 16 19 H 0.05 3.16 8.03 -2.91 -0.02 3.13 16 20 C 0.04 2.14 5.50 84.85 0.47 2.61 16 21 N -0.92 -56.44 13.97 21.65 0.30 -56.14 16 22 Si 0.93 43.06 27.74 68.60 1.90 44.97 16 23 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.22 -9.88 6.74 99.48 0.67 -9.21 16 26 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.11 0.63 7.72 -2.39 -0.02 0.61 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.09 1.50 7.88 -2.39 -0.02 1.48 16 31 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.18 0.38 7.76 -2.39 -0.02 0.36 16 35 H 0.17 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 37 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -81.70 379.25 4.62 -77.09 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.98 Total: 10.23 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 6.80 Total: -9.05 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -3.79 Total: -90.02 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.18 Total: -22.81 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.90 Total: 44.97 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.10 Total: -10.40 kcal Total: -81.70 4.62 -77.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829909759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.204 kcal (2) G-P(sol) polarization free energy of solvation -81.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds