Wall clock time and date at job start Sat Apr 11 2020 01:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.50705 * 120.00208 * 2 1 4 4 C 1.53000 * 109.46880 * 294.99691 * 3 2 1 5 5 C 1.53001 * 109.46857 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47097 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99789 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00244 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99859 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00391 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46810 * 89.99304 * 10 8 6 12 12 H 1.48493 * 109.47121 * 209.99720 * 10 8 6 13 13 H 1.48494 * 109.46668 * 330.00027 * 10 8 6 14 14 N 1.28023 * 120.00169 * 179.97438 * 2 1 3 15 15 N 1.40098 * 119.99956 * 0.02562 * 14 2 1 16 16 C 1.39599 * 120.00123 * 179.97438 * 15 14 2 17 17 C 1.38988 * 120.08105 * 0.29744 * 16 15 14 18 18 C 1.38065 * 119.92172 * 180.27175 * 17 16 15 19 19 C 1.38321 * 120.07795 * 359.70645 * 18 17 16 20 20 C 1.38279 * 120.15772 * 359.97438 * 19 18 17 21 21 C 1.38101 * 120.08589 * 0.02562 * 20 19 18 22 22 S 1.76193 * 120.04452 * 179.97438 * 21 20 19 23 23 N 1.65606 * 107.21910 * 115.00318 * 22 21 20 24 24 O 1.42105 * 106.40403 * 228.54207 * 22 21 20 25 25 O 1.42098 * 106.40145 * 1.46136 * 22 21 20 26 26 H 1.08999 * 109.47658 * 270.00271 * 1 2 3 27 27 H 1.09004 * 109.47020 * 30.00500 * 1 2 3 28 28 H 1.09003 * 109.47159 * 149.99715 * 1 2 3 29 29 H 1.08998 * 109.46814 * 54.99534 * 3 2 1 30 30 H 1.08997 * 109.47122 * 174.99507 * 3 2 1 31 31 H 1.08998 * 109.47268 * 299.99564 * 4 3 2 32 32 H 1.09000 * 109.46677 * 60.00083 * 4 3 2 33 33 H 1.08998 * 109.47171 * 300.00047 * 5 4 3 34 34 H 1.09005 * 109.46745 * 60.00378 * 5 4 3 35 35 H 0.97001 * 120.00371 * 180.02562 * 9 8 6 36 36 H 0.96998 * 119.99950 * 359.97438 * 15 14 2 37 37 H 1.08005 * 120.04141 * 359.97438 * 17 16 15 38 38 H 1.08000 * 119.96194 * 179.72049 * 18 17 16 39 39 H 1.07999 * 119.91899 * 180.02562 * 19 18 17 40 40 H 1.08010 * 119.95718 * 180.02562 * 20 19 18 41 41 H 0.97003 * 119.99610 * 270.00212 * 23 22 21 42 42 H 0.96993 * 120.00139 * 89.99542 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0515 -1.3074 5 6 2.7521 3.3768 -1.3071 6 6 2.4829 4.1124 -2.5946 7 1 1.8319 3.6778 -3.3387 8 6 3.0684 5.3395 -2.8229 9 7 3.8614 5.8685 -1.9169 10 14 2.7352 6.2510 -4.4191 11 1 1.5478 7.1267 -4.2504 12 1 3.9157 7.0799 -4.7715 13 1 2.4769 5.2706 -5.5042 14 7 2.1471 -1.1087 0.0005 15 7 1.4466 -2.3220 0.0005 16 6 2.1446 -3.5310 0.0005 17 6 3.5345 -3.5329 0.0067 18 6 4.2215 -4.7305 0.0010 19 6 3.5282 -5.9274 -0.0047 20 6 2.1454 -5.9293 -0.0043 21 6 1.4515 -4.7353 0.0014 22 16 -0.3104 -4.7389 0.0013 23 7 -0.8021 -4.0782 1.4380 24 8 -0.7136 -3.8324 -1.0161 25 8 -0.7088 -6.1026 0.0295 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.9316 1.9145 0.8418 30 1 3.3287 1.1079 0.0897 31 1 2.3165 1.4422 -2.1492 32 1 0.9193 2.2487 -1.3969 33 1 2.4229 3.9860 -0.4654 34 1 3.8205 3.1799 -1.2173 35 1 4.2731 6.7320 -2.0774 36 1 0.4766 -2.3220 0.0005 37 1 4.0765 -2.5987 0.0112 38 1 5.3015 -4.7328 0.0013 39 1 4.0682 -6.8627 -0.0088 40 1 1.6073 -6.8658 -0.0084 41 1 -0.9445 -4.6478 2.2102 42 1 -0.9476 -3.1218 1.5074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841636823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:28:06 Heat of formation + Delta-G solvation = -24.879431 kcal Electronic energy + Delta-G solvation = -24760.293205 eV Core-core repulsion = 21060.595056 eV Total energy + Delta-G solvation = -3699.698149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -39.85131 -38.15694 -37.54259 -36.24185 -35.13486 -33.75567 -33.36818 -31.82802 -31.41839 -29.47168 -28.13293 -27.06756 -23.87133 -23.61312 -22.31323 -20.44682 -20.05036 -19.33008 -18.57926 -17.94983 -17.45834 -17.20538 -16.52649 -16.13788 -15.45544 -15.06177 -14.82062 -14.65189 -14.44885 -14.33415 -14.01920 -13.65806 -13.48651 -12.74732 -12.65002 -12.46706 -12.43782 -12.38154 -12.19204 -11.97204 -11.81773 -11.76245 -11.46549 -11.36777 -10.87101 -10.83234 -10.69878 -10.57067 -10.12388 -9.89019 -9.73373 -9.58371 -9.37329 -9.10079 -8.36853 -7.82684 -6.02196 -4.04501 0.04793 0.63992 1.15621 2.17589 2.33431 2.79538 3.29685 3.30990 3.37577 3.41316 3.52191 3.95976 4.43507 4.48447 4.61176 4.65052 4.85977 5.00465 5.06502 5.26436 5.27610 5.31318 5.34081 5.46400 5.62048 5.74770 5.79512 5.85293 5.93322 5.95839 6.12461 6.25003 6.37989 6.47371 6.57195 6.64229 6.76528 6.91159 7.04640 7.64264 7.77312 7.97435 8.02075 8.39685 9.02498 9.59906 11.09071 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.002423 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.310532 B =11551.941288 C =12205.989903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 C -0.064 4.064 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.521 4.521 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.261 5.261 15 N -0.593 5.593 16 C 0.323 3.677 17 C -0.179 4.179 18 C -0.028 4.028 19 C -0.191 4.191 20 C 0.012 3.988 21 C -0.753 4.753 22 S 2.700 3.300 23 N -1.247 6.247 24 O -0.960 6.960 25 O -0.957 6.957 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.382 0.618 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.142 0.858 41 H 0.423 0.577 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 -23.262 10.547 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.069 4.069 3 C -0.104 4.104 4 C -0.143 4.143 5 C -0.015 4.015 6 C -0.560 4.560 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.066 5.066 15 N -0.313 5.313 16 C 0.217 3.783 17 C -0.201 4.201 18 C -0.047 4.047 19 C -0.211 4.211 20 C -0.008 4.008 21 C -0.848 4.848 22 S 2.788 3.212 23 N -0.918 5.918 24 O -0.950 6.950 25 O -0.947 6.947 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.225 0.775 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.160 0.840 41 H 0.252 0.748 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.294 -23.876 9.747 26.327 hybrid contribution -0.711 1.121 -0.278 1.356 sum -6.006 -22.756 9.469 25.368 Atomic orbital electron populations 1.21502 0.93136 1.04997 1.03495 1.25447 0.94708 0.94049 0.92743 1.20724 0.99855 0.88507 1.01331 1.21661 1.00894 0.98396 0.93385 1.19101 0.95337 0.89889 0.97181 1.21243 1.28435 1.03339 1.02933 0.92683 1.25011 0.95140 0.97561 0.96700 1.69957 1.31299 1.17933 1.34305 0.86607 0.77734 0.79821 0.83936 1.20667 1.21231 1.19873 1.74271 1.24450 0.90792 1.17113 1.46019 1.06704 1.01607 1.76938 1.16918 0.92185 0.81736 0.87507 1.20964 0.91931 0.99746 1.07458 1.21328 1.00209 0.91920 0.91288 1.21081 0.94024 0.98402 1.07635 1.20621 0.94696 0.95462 0.89983 1.30113 1.26161 0.97808 1.30680 1.01541 0.73708 0.73420 0.72546 1.53431 1.86244 1.20044 1.32104 1.93626 1.81558 1.65084 1.54695 1.93580 1.81352 1.33739 1.86040 0.89841 0.88377 0.91369 0.89505 0.90030 0.92998 0.92827 0.96373 0.96375 0.92988 0.77541 0.83785 0.85092 0.85327 0.84016 0.74758 0.75589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.46 36.00 0.34 -1.56 16 2 C 0.12 1.69 6.55 -78.91 -0.52 1.17 16 3 C -0.06 -0.98 5.60 -27.88 -0.16 -1.14 16 4 C -0.10 -1.99 5.03 -26.73 -0.13 -2.12 16 5 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 6 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 N -0.26 -3.77 10.22 35.60 0.36 -3.41 16 15 N -0.59 -7.74 6.10 32.42 0.20 -7.54 16 16 C 0.32 4.10 6.68 -83.78 -0.56 3.54 16 17 C -0.18 -2.16 9.51 -39.37 -0.37 -2.53 16 18 C -0.03 -0.27 10.04 -39.61 -0.40 -0.67 16 19 C -0.19 -1.71 10.04 -39.54 -0.40 -2.11 16 20 C 0.01 0.12 9.54 -39.62 -0.38 -0.26 16 21 C -0.75 -8.34 5.93 -39.37 -0.23 -8.58 16 22 S 2.70 27.30 5.55 -107.50 -0.60 26.70 16 23 N -1.25 -7.50 9.35 60.35 0.56 -6.93 16 24 O -0.96 -12.72 16.27 -57.17 -0.93 -13.65 16 25 O -0.96 -11.44 16.97 -57.17 -0.97 -12.41 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.10 1.08 6.91 -51.93 -0.36 0.72 16 28 H 0.07 0.76 6.31 -51.93 -0.33 0.43 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.28 8.11 -51.93 -0.42 0.85 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.96 7.01 -51.93 -0.36 0.60 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.38 4.44 3.07 -182.60 -0.56 3.88 16 37 H 0.14 1.81 7.36 -52.48 -0.39 1.42 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.14 1.15 7.33 -52.48 -0.38 0.76 16 41 H 0.42 1.55 8.96 -34.47 -0.31 1.24 16 42 H 0.42 2.00 8.42 -34.47 -0.29 1.71 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -35.21 362.89 -9.45 -44.66 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.90 Total: 3.49 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -3.36 Total: -27.07 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 1.86 Total: -43.59 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -1.90 Total: -26.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 27.30 SS G_CDS: -0.60 Total: 26.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.21 -9.45 -44.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841636823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.777 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds