Wall clock time and date at job start Sat Apr 11 2020 01:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.50705 * 120.00208 * 2 1 4 4 C 1.53000 * 109.46880 * 294.99691 * 3 2 1 5 5 C 1.53001 * 109.46857 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47097 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99789 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00244 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99859 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00391 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46810 * 89.99304 * 10 8 6 12 12 H 1.48493 * 109.47121 * 209.99720 * 10 8 6 13 13 H 1.48494 * 109.46668 * 330.00027 * 10 8 6 14 14 N 1.28023 * 120.00169 * 179.97438 * 2 1 3 15 15 N 1.40098 * 119.99956 * 0.02562 * 14 2 1 16 16 C 1.39599 * 120.00123 * 179.97438 * 15 14 2 17 17 C 1.38988 * 120.08105 * 0.29744 * 16 15 14 18 18 C 1.38065 * 119.92172 * 180.27175 * 17 16 15 19 19 C 1.38321 * 120.07795 * 359.70645 * 18 17 16 20 20 C 1.38279 * 120.15772 * 359.97438 * 19 18 17 21 21 C 1.38101 * 120.08589 * 0.02562 * 20 19 18 22 22 S 1.76193 * 120.04452 * 179.97438 * 21 20 19 23 23 N 1.65606 * 107.21910 * 115.00318 * 22 21 20 24 24 O 1.42105 * 106.40403 * 228.54207 * 22 21 20 25 25 O 1.42098 * 106.40145 * 1.46136 * 22 21 20 26 26 H 1.08999 * 109.47658 * 270.00271 * 1 2 3 27 27 H 1.09004 * 109.47020 * 30.00500 * 1 2 3 28 28 H 1.09003 * 109.47159 * 149.99715 * 1 2 3 29 29 H 1.08998 * 109.46814 * 54.99534 * 3 2 1 30 30 H 1.08997 * 109.47122 * 174.99507 * 3 2 1 31 31 H 1.08998 * 109.47268 * 299.99564 * 4 3 2 32 32 H 1.09000 * 109.46677 * 60.00083 * 4 3 2 33 33 H 1.08998 * 109.47171 * 300.00047 * 5 4 3 34 34 H 1.09005 * 109.46745 * 60.00378 * 5 4 3 35 35 H 0.97001 * 120.00371 * 180.02562 * 9 8 6 36 36 H 0.96998 * 119.99950 * 359.97438 * 15 14 2 37 37 H 1.08005 * 120.04141 * 359.97438 * 17 16 15 38 38 H 1.08000 * 119.96194 * 179.72049 * 18 17 16 39 39 H 1.07999 * 119.91899 * 180.02562 * 19 18 17 40 40 H 1.08010 * 119.95718 * 180.02562 * 20 19 18 41 41 H 0.97003 * 119.99610 * 270.00212 * 23 22 21 42 42 H 0.96993 * 120.00139 * 89.99542 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0515 -1.3074 5 6 2.7521 3.3768 -1.3071 6 6 2.4829 4.1124 -2.5946 7 1 1.8319 3.6778 -3.3387 8 6 3.0684 5.3395 -2.8229 9 7 3.8614 5.8685 -1.9169 10 14 2.7352 6.2510 -4.4191 11 1 1.5478 7.1267 -4.2504 12 1 3.9157 7.0799 -4.7715 13 1 2.4769 5.2706 -5.5042 14 7 2.1471 -1.1087 0.0005 15 7 1.4466 -2.3220 0.0005 16 6 2.1446 -3.5310 0.0005 17 6 3.5345 -3.5329 0.0067 18 6 4.2215 -4.7305 0.0010 19 6 3.5282 -5.9274 -0.0047 20 6 2.1454 -5.9293 -0.0043 21 6 1.4515 -4.7353 0.0014 22 16 -0.3104 -4.7389 0.0013 23 7 -0.8021 -4.0782 1.4380 24 8 -0.7136 -3.8324 -1.0161 25 8 -0.7088 -6.1026 0.0295 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.9316 1.9145 0.8418 30 1 3.3287 1.1079 0.0897 31 1 2.3165 1.4422 -2.1492 32 1 0.9193 2.2487 -1.3969 33 1 2.4229 3.9860 -0.4654 34 1 3.8205 3.1799 -1.2173 35 1 4.2731 6.7320 -2.0774 36 1 0.4766 -2.3220 0.0005 37 1 4.0765 -2.5987 0.0112 38 1 5.3015 -4.7328 0.0013 39 1 4.0682 -6.8627 -0.0088 40 1 1.6073 -6.8658 -0.0084 41 1 -0.9445 -4.6478 2.2102 42 1 -0.9476 -3.1218 1.5074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841636823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:28:03 Heat of formation + Delta-G solvation = -50.219546 kcal Electronic energy + Delta-G solvation = -24761.392035 eV Core-core repulsion = 21060.595056 eV Total energy + Delta-G solvation = -3700.796979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.70967 -39.12558 -38.47544 -37.14019 -36.49673 -35.04319 -34.27374 -33.37655 -32.26310 -30.60980 -29.12758 -28.55039 -25.54049 -24.45818 -23.32142 -22.07991 -20.87905 -20.32120 -19.44574 -18.65915 -18.40767 -18.24891 -17.93720 -17.39705 -16.52419 -16.29758 -15.89179 -15.76009 -15.48169 -15.37666 -15.28770 -14.71861 -14.51238 -14.15131 -13.67718 -13.56114 -13.47650 -13.37017 -13.26956 -13.23995 -13.00320 -12.92732 -12.64343 -12.51161 -12.45369 -12.40098 -12.11437 -11.53641 -11.40528 -11.36615 -11.21516 -11.00451 -10.71948 -10.51732 -10.38689 -8.74009 -8.17761 -6.27713 -0.73081 -0.17295 0.31075 1.16516 1.40105 1.41553 1.42233 1.53177 2.07537 2.42783 2.49719 2.73036 3.15048 3.15842 3.53221 3.67339 3.84652 4.06279 4.13650 4.31953 4.35795 4.38861 4.48513 4.55749 4.61498 4.69496 4.89015 4.94389 4.99119 5.04279 5.09528 5.21674 5.22515 5.31335 5.39038 5.48900 5.56642 5.66104 5.80959 5.90526 6.06115 6.17259 6.28867 6.89701 7.03164 7.41269 8.93730 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.002423 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.310532 B =11551.941288 C =12205.989903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 C -0.055 4.055 4 C -0.090 4.090 5 C 0.025 3.975 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.278 5.278 15 N -0.594 5.594 16 C 0.297 3.703 17 C -0.202 4.202 18 C -0.026 4.026 19 C -0.185 4.185 20 C 0.003 3.997 21 C -0.757 4.757 22 S 2.720 3.280 23 N -1.230 6.230 24 O -0.993 6.993 25 O -0.976 6.976 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.003 0.997 34 H -0.009 1.009 35 H 0.263 0.737 36 H 0.387 0.613 37 H 0.131 0.869 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.436 0.564 42 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.608 -24.724 10.738 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.076 4.076 3 C -0.094 4.094 4 C -0.129 4.129 5 C -0.013 4.013 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.191 1.191 14 N -0.084 5.084 15 N -0.316 5.316 16 C 0.192 3.808 17 C -0.225 4.225 18 C -0.045 4.045 19 C -0.205 4.205 20 C -0.016 4.016 21 C -0.851 4.851 22 S 2.807 3.193 23 N -0.906 5.906 24 O -0.982 6.982 25 O -0.966 6.966 26 H 0.132 0.868 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.010 0.990 35 H 0.072 0.928 36 H 0.231 0.769 37 H 0.149 0.851 38 H 0.175 0.825 39 H 0.179 0.821 40 H 0.177 0.823 41 H 0.268 0.732 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.091 -25.362 9.952 27.917 hybrid contribution -0.402 1.466 -0.285 1.547 sum -6.493 -23.895 9.667 26.582 Atomic orbital electron populations 1.21566 0.91068 1.04887 1.05504 1.25286 0.95958 0.93080 0.93233 1.20479 0.99708 0.89482 0.99755 1.21396 1.00625 0.95740 0.95158 1.19007 0.94412 0.92306 0.95542 1.21720 1.28343 1.03916 1.04100 0.92453 1.25909 0.94903 0.98613 1.00238 1.70079 1.32333 1.18457 1.36352 0.85529 0.77837 0.78533 0.79653 1.19601 1.20879 1.19149 1.74158 1.25639 0.91570 1.16995 1.45934 1.06913 1.01181 1.77601 1.17169 0.92663 0.82006 0.88990 1.21068 0.92065 1.00350 1.08970 1.21670 1.01621 0.91279 0.89956 1.21499 0.93861 0.99433 1.05702 1.21004 0.95469 0.95698 0.89462 1.30251 1.26602 0.97736 1.30506 1.00756 0.73209 0.72587 0.72711 1.53032 1.85487 1.20737 1.31393 1.93581 1.82059 1.65828 1.56763 1.93550 1.81582 1.34833 1.86595 0.86756 0.88311 0.91519 0.87851 0.91041 0.94196 0.91525 0.97832 0.99012 0.92810 0.76935 0.85119 0.82508 0.82114 0.82289 0.73152 0.74520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.46 71.23 0.67 -2.86 16 2 C 0.12 3.15 6.55 46.53 0.30 3.46 16 3 C -0.05 -1.66 5.60 29.85 0.17 -1.50 16 4 C -0.09 -3.47 5.03 30.59 0.15 -3.32 16 5 C 0.02 1.24 4.97 29.85 0.15 1.39 16 6 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 7 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 8 C 0.00 0.07 5.46 84.65 0.46 0.53 16 9 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 10 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 N -0.28 -8.05 10.22 -41.20 -0.42 -8.47 16 15 N -0.59 -15.35 6.10 -51.34 -0.31 -15.66 16 16 C 0.30 7.42 6.68 38.26 0.26 7.68 16 17 C -0.20 -4.84 9.51 22.41 0.21 -4.63 16 18 C -0.03 -0.46 10.04 22.25 0.22 -0.24 16 19 C -0.18 -2.84 10.04 22.30 0.22 -2.61 16 20 C 0.00 0.06 9.54 22.25 0.21 0.27 16 21 C -0.76 -16.01 5.93 22.41 0.13 -15.88 16 22 S 2.72 52.30 5.55 -56.49 -0.31 51.98 16 23 N -1.23 -12.84 9.35 37.02 0.35 -12.49 16 24 O -0.99 -25.84 16.27 -128.00 -2.08 -27.93 16 25 O -0.98 -22.10 16.97 -128.00 -2.17 -24.27 16 26 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 27 H 0.10 2.02 6.91 -2.38 -0.02 2.01 16 28 H 0.07 1.41 6.31 -2.39 -0.02 1.40 16 29 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.07 2.30 8.11 -2.39 -0.02 2.28 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.37 7.01 -2.39 -0.02 2.35 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 35 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.39 8.77 3.07 -213.32 -0.65 8.11 16 37 H 0.13 3.40 7.36 -2.91 -0.02 3.37 16 38 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.16 2.21 7.33 -2.91 -0.02 2.19 16 41 H 0.44 2.34 8.96 -96.74 -0.87 1.47 16 42 H 0.42 3.34 8.42 -96.75 -0.81 2.53 16 Total: -1.00 -76.58 362.89 -0.50 -77.08 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -1.26 Total: 17.25 kcal Atomic # 6 Polarization: -51.30 SS G_CDS: 3.40 Total: -47.90 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -0.10 Total: -92.28 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -4.25 Total: -52.20 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 52.30 SS G_CDS: -0.31 Total: 51.98 kcal Total: -76.58 -0.50 -77.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841636823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.860 kcal (2) G-P(sol) polarization free energy of solvation -76.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds