Wall clock time and date at job start Sat Apr 11 2020 01:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.49360 * 119.99920 * 2 1 4 4 C 1.81405 * 108.32938 * 297.53049 * 3 2 1 5 5 O 1.42104 * 108.33098 * 62.46084 * 3 2 1 6 6 C 1.76198 * 108.73122 * 179.97438 * 3 2 1 7 7 C 1.38305 * 119.96240 * 87.55513 * 6 3 2 8 8 C 1.38261 * 120.13616 * 179.97438 * 7 6 3 9 9 C 1.38140 * 120.07247 * 359.76257 * 8 7 6 10 10 C 1.38844 * 119.92401 * 0.48692 * 9 8 7 11 11 N 1.39953 * 120.06423 * 179.76330 * 10 9 8 12 12 C 1.34775 * 119.99494 * 214.81659 * 11 10 9 13 13 O 1.21591 * 120.00598 * 355.37941 * 12 11 10 14 14 N 1.34776 * 119.99995 * 175.38042 * 12 11 10 15 15 C 1.46495 * 120.00526 * 179.97438 * 14 12 11 16 16 H 1.08996 * 109.47098 * 325.00209 * 15 14 12 17 17 C 1.53001 * 109.46937 * 85.00027 * 15 14 12 18 18 C 1.50700 * 109.47194 * 204.99887 * 15 14 12 19 19 H 1.07993 * 120.00465 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99860 * 180.27330 * 18 15 14 21 21 N 1.31513 * 120.00057 * 359.73407 * 20 18 15 22 22 Si 1.86799 * 120.00125 * 179.72217 * 20 18 15 23 23 H 1.48506 * 109.47117 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46766 * 120.00055 * 22 20 18 25 25 H 1.48490 * 109.47582 * 240.00474 * 22 20 18 26 26 C 1.38093 * 119.96399 * 267.52839 * 6 3 2 27 27 H 1.09008 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47215 * 300.00489 * 1 2 3 29 29 H 1.08998 * 109.46868 * 60.00944 * 1 2 3 30 30 H 1.09004 * 109.46933 * 301.10672 * 4 3 2 31 31 H 1.08997 * 109.46851 * 61.10307 * 4 3 2 32 32 H 1.08998 * 109.46588 * 181.10683 * 4 3 2 33 33 H 1.07996 * 119.93323 * 359.97438 * 7 6 3 34 34 H 1.08003 * 119.96020 * 180.02562 * 8 7 6 35 35 H 1.08002 * 120.03413 * 180.25430 * 9 8 7 36 36 H 0.96994 * 119.99797 * 34.81995 * 11 10 9 37 37 H 0.97006 * 119.99843 * 359.97438 * 14 12 11 38 38 H 1.09004 * 109.47161 * 60.00492 * 17 15 14 39 39 H 1.08998 * 109.47458 * 179.97438 * 17 15 14 40 40 H 1.08995 * 109.47034 * 300.00355 * 17 15 14 41 41 H 0.96998 * 120.00226 * 180.02562 * 21 20 18 42 42 H 1.07994 * 120.03407 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2118 1.2935 0.0000 4 6 1.8077 2.1855 -1.5270 5 8 1.8951 1.9924 1.1961 6 6 3.9398 0.9492 0.0007 7 6 4.6077 0.7639 -1.1961 8 6 5.9637 0.4940 -1.1997 9 6 6.6567 0.4136 -0.0074 10 6 5.9880 0.5941 1.1959 11 7 6.6862 0.5084 2.4058 12 6 6.0849 -0.0086 3.4956 13 8 4.9111 -0.3227 3.4509 14 7 6.7847 -0.1774 4.6350 15 6 6.1310 -0.7388 5.8198 16 1 5.0958 -0.4000 5.8584 17 6 6.1652 -2.2666 5.7453 18 6 6.8563 -0.2799 7.0585 19 1 7.7182 0.3650 6.9719 20 6 6.4232 -0.6885 8.3021 21 7 5.3740 -1.4743 8.4076 22 14 7.3269 -0.1260 9.8372 23 1 8.4650 0.7460 9.4501 24 1 6.3956 0.6342 10.7091 25 1 7.8382 -1.3103 10.5726 26 6 4.6259 0.8653 1.1963 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 2.0837 1.5761 -2.3876 31 1 0.7377 2.3909 -1.5554 32 1 2.3591 3.1253 -1.5554 33 1 4.0690 0.8300 -2.1297 34 1 6.4826 0.3502 -2.1360 35 1 7.7168 0.2069 -0.0111 36 1 7.6028 0.8210 2.4599 37 1 7.7212 0.0728 4.6706 38 1 7.2005 -2.6054 5.7067 39 1 5.6793 -2.6844 6.6270 40 1 5.6407 -2.5985 4.8493 41 1 5.0691 -1.7615 9.2825 42 1 4.1039 1.0110 2.1304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879830755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:30:13 Heat of formation + Delta-G solvation = -14.854338 kcal Electronic energy + Delta-G solvation = -25187.819585 eV Core-core repulsion = 21488.556157 eV Total energy + Delta-G solvation = -3699.263428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73646 -39.86705 -37.37114 -36.98905 -35.86219 -35.00120 -34.39750 -32.34241 -31.60059 -30.36867 -29.57659 -27.37530 -26.69588 -24.63125 -24.22877 -22.82807 -21.66024 -20.03338 -19.78658 -18.52675 -18.00992 -17.54066 -16.98240 -16.93170 -16.70186 -16.50117 -16.30980 -15.88328 -15.57473 -15.13112 -14.66058 -14.43719 -14.33777 -14.21064 -13.98503 -13.91971 -13.78824 -13.68824 -13.25155 -13.01528 -12.98506 -12.94019 -12.76728 -12.53259 -12.31601 -12.13369 -12.01489 -11.60284 -11.17000 -11.12931 -10.64891 -10.37497 -10.11008 -9.94765 -9.55261 -9.22535 -8.19925 -6.38353 -1.19070 -0.30992 0.21825 1.43296 1.44167 1.56198 1.65907 1.82074 2.05623 2.39683 2.51212 2.84713 3.10563 3.14246 3.39148 3.81719 3.98348 4.02773 4.11692 4.16334 4.34690 4.40475 4.47880 4.64876 4.68017 4.73151 4.87710 4.89567 4.97179 5.00409 5.04599 5.13784 5.19293 5.35035 5.39245 5.55184 5.60163 5.78617 5.79565 5.86210 6.05131 6.18278 6.69682 7.15931 7.30535 7.59813 8.87116 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.003008 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.451154 B = 9304.858002 C =10275.868625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.181 6.181 3 S 2.355 3.645 4 C -0.635 4.635 5 O -1.027 7.027 6 C -0.540 4.540 7 C -0.051 4.051 8 C -0.098 4.098 9 C -0.082 4.082 10 C 0.137 3.863 11 N -0.674 5.674 12 C 0.686 3.314 13 O -0.629 6.629 14 N -0.709 5.709 15 C 0.286 3.714 16 H -0.007 1.007 17 C -0.133 4.133 18 C -0.546 4.546 19 H 0.078 0.922 20 C 0.011 3.989 21 N -0.919 5.919 22 Si 0.978 3.022 23 H -0.257 1.257 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.067 4.067 27 H 0.087 0.913 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.168 0.832 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.188 0.812 34 H 0.193 0.807 35 H 0.175 0.825 36 H 0.428 0.572 37 H 0.407 0.593 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.007 0.993 41 H 0.266 0.734 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 7.978 -28.115 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -1.087 6.087 3 S 2.549 3.451 4 C -0.794 4.794 5 O -1.013 7.013 6 C -0.639 4.639 7 C -0.071 4.071 8 C -0.117 4.117 9 C -0.102 4.102 10 C 0.041 3.959 11 N -0.324 5.324 12 C 0.387 3.613 13 O -0.509 6.509 14 N -0.362 5.362 15 C 0.183 3.817 16 H 0.011 0.989 17 C -0.192 4.192 18 C -0.584 4.584 19 H 0.096 0.904 20 C -0.189 4.189 21 N -0.557 5.557 22 Si 0.803 3.197 23 H -0.180 1.180 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.090 4.090 27 H 0.106 0.894 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.186 0.814 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.205 0.795 34 H 0.210 0.790 35 H 0.193 0.807 36 H 0.267 0.733 37 H 0.242 0.758 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.026 0.974 41 H 0.075 0.925 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.885 7.397 -27.127 28.265 hybrid contribution 0.443 0.716 1.483 1.705 sum 3.328 8.112 -25.644 27.102 Atomic orbital electron populations 1.21303 0.82507 1.03443 0.99043 1.74859 1.19769 1.34081 1.80007 1.11251 0.78327 0.74606 0.80913 1.30264 1.12847 1.15832 1.20413 1.93400 1.82215 1.79103 1.46561 1.27853 1.16109 1.20094 0.99829 1.21539 0.96243 0.93797 0.95531 1.21662 0.93376 0.97503 0.99181 1.21732 1.02626 0.96129 0.89732 1.17825 0.91161 1.00656 0.86303 1.42409 1.17805 1.65065 1.07151 1.16393 0.84893 0.78681 0.81375 1.90922 1.17014 1.58989 1.83992 1.45401 1.14364 1.66271 1.10157 1.18284 0.91998 0.90325 0.81121 0.98887 1.21914 0.99507 0.98519 0.99294 1.21551 1.14936 1.31315 0.90609 0.90400 1.25877 0.95711 0.94673 1.02609 1.70080 1.25513 1.34981 1.25146 0.85206 0.78402 0.78136 0.78001 1.18032 1.21187 1.20241 1.20875 0.95510 0.95419 0.97167 0.89441 0.97081 0.91001 0.81414 0.84358 0.83798 0.79489 0.78966 0.80749 0.73278 0.75770 0.93593 0.91392 0.97387 0.92499 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.37 10.94 127.77 1.40 3.77 16 2 N -1.18 -37.81 10.90 -206.53 -2.25 -40.06 16 3 S 2.36 62.88 4.39 -56.49 -0.25 62.63 16 4 C -0.64 -6.26 9.96 113.37 1.13 -5.13 16 5 O -1.03 -41.75 17.43 -148.98 -2.60 -44.34 16 6 C -0.54 -13.91 5.95 22.25 0.13 -13.78 16 7 C -0.05 -0.69 9.45 22.29 0.21 -0.48 16 8 C -0.10 -1.02 10.04 22.25 0.22 -0.80 16 9 C -0.08 -1.29 9.97 22.39 0.22 -1.07 16 10 C 0.14 3.88 6.30 38.14 0.24 4.12 16 11 N -0.67 -20.11 5.34 -317.17 -1.70 -21.81 16 12 C 0.69 29.73 8.37 179.06 1.50 31.23 16 13 O -0.63 -34.61 13.44 -4.00 -0.05 -34.66 16 14 N -0.71 -30.50 5.07 -461.42 -2.34 -32.84 16 15 C 0.29 15.58 2.56 44.25 0.11 15.69 16 16 H -0.01 -0.44 7.58 -2.39 -0.02 -0.46 16 17 C -0.13 -7.10 9.26 71.98 0.67 -6.43 16 18 C -0.55 -29.53 8.73 25.60 0.22 -29.31 16 19 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 20 C 0.01 0.62 5.30 84.66 0.45 1.07 16 21 N -0.92 -54.54 11.31 21.45 0.24 -54.30 16 22 Si 0.98 42.77 29.54 68.60 2.03 44.80 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 C -0.07 -2.38 8.21 22.39 0.18 -2.19 16 27 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.07 1.24 7.51 -2.39 -0.02 1.22 16 30 H 0.17 0.37 7.34 -2.39 -0.02 0.35 16 31 H 0.14 1.17 7.72 -2.39 -0.02 1.15 16 32 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.19 0.46 6.90 -2.91 -0.02 0.44 16 34 H 0.19 0.06 8.06 -2.91 -0.02 0.04 16 35 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.43 8.45 8.84 -92.71 -0.82 7.63 16 37 H 0.41 13.94 8.56 -92.70 -0.79 13.15 16 38 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.07 3.94 6.06 -2.39 -0.01 3.93 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.10 4.91 5.91 -2.91 -0.02 4.89 16 Total: -1.00 -98.29 363.08 -0.78 -99.07 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -0.55 Total: 24.83 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 6.69 Total: -3.32 kcal Atomic # 7 Polarization: -142.96 SS G_CDS: -6.04 Total: -149.01 kcal Atomic # 8 Polarization: -76.35 SS G_CDS: -2.65 Total: -79.00 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 62.88 SS G_CDS: -0.25 Total: 62.63 kcal Total: -98.29 -0.78 -99.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879830755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.217 kcal (2) G-P(sol) polarization free energy of solvation -98.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds