Wall clock time and date at job start Sat Apr 11 2020 01:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86802 * 120.00274 * 2 1 4 4 H 1.48494 * 109.46906 * 274.99492 * 3 2 1 5 5 H 1.48498 * 109.47076 * 34.99706 * 3 2 1 6 6 H 1.48500 * 109.46907 * 154.99646 * 3 2 1 7 7 C 1.40056 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 169.49566 * 7 2 1 9 9 C 1.41331 * 119.99790 * 349.50037 * 7 2 1 10 10 C 1.40858 * 120.14803 * 330.65694 * 9 7 2 11 11 N 1.31860 * 119.96271 * 180.02562 * 10 9 7 12 12 C 1.32204 * 120.28294 * 0.02562 * 11 10 9 13 13 C 1.39993 * 120.29879 * 0.02562 * 12 11 10 14 14 C 1.48294 * 119.98562 * 179.97438 * 13 12 11 15 15 C 1.39416 * 120.12591 * 311.40288 * 14 13 12 16 16 C 1.37984 * 119.87323 * 180.02562 * 15 14 13 17 17 C 1.38358 * 120.12405 * 359.97242 * 16 15 14 18 18 C 1.38314 * 120.25713 * 359.79430 * 17 16 15 19 19 C 1.38031 * 120.12355 * 0.46280 * 18 17 16 20 20 C 1.50698 * 120.06264 * 179.79117 * 19 18 17 21 21 N 1.46899 * 109.47306 * 258.91764 * 20 19 18 22 22 C 1.47021 * 110.99772 * 46.31861 * 21 20 19 23 23 C 1.53095 * 109.25512 * 182.35253 * 22 21 20 24 24 O 1.43014 * 109.29101 * 303.22053 * 23 22 21 25 25 C 1.43020 * 113.74132 * 58.65063 * 24 23 22 26 26 C 1.47013 * 111.00016 * 170.00566 * 21 20 19 27 27 N 1.32548 * 120.03028 * 0.23145 * 13 12 11 28 28 H 0.97003 * 119.99716 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.01838 * 0.02885 * 10 9 7 30 30 H 1.07998 * 119.84932 * 179.97438 * 12 11 10 31 31 H 1.08001 * 120.06630 * 0.03502 * 15 14 13 32 32 H 1.07999 * 119.94105 * 179.97438 * 16 15 14 33 33 H 1.08001 * 119.87187 * 180.02562 * 17 16 15 34 34 H 1.07994 * 119.94045 * 180.25773 * 18 17 16 35 35 H 1.09005 * 109.47005 * 138.91437 * 20 19 18 36 36 H 1.09004 * 109.47224 * 18.91739 * 20 19 18 37 37 H 1.09006 * 109.46609 * 62.43784 * 22 21 20 38 38 H 1.09002 * 109.54189 * 302.31183 * 22 21 20 39 39 H 1.08993 * 109.50718 * 183.26637 * 23 22 21 40 40 H 1.09002 * 109.50618 * 63.17392 * 23 22 21 41 41 H 1.08993 * 109.50392 * 61.26044 * 25 24 23 42 42 H 1.09001 * 109.50672 * 181.35251 * 25 24 23 43 43 H 1.08992 * 109.50671 * 57.66829 * 26 21 20 44 44 H 1.09007 * 109.50536 * 297.53871 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3833 2.1073 -1.3947 5 1 1.4956 2.6199 0.8030 6 1 3.5877 1.4118 0.5918 7 6 2.0075 -1.2129 0.0005 8 1 3.0739 -1.2209 -0.1700 9 6 1.3185 -2.4265 0.2241 10 6 0.1560 -2.4439 1.0194 11 7 -0.4836 -3.5783 1.2260 12 6 -0.0385 -4.7018 0.6901 13 6 1.1163 -4.6979 -0.1014 14 6 1.6097 -5.9623 -0.6987 15 6 1.7407 -7.1044 0.0900 16 6 2.2009 -8.2780 -0.4711 17 6 2.5315 -8.3228 -1.8139 18 6 2.3989 -7.1941 -2.6023 19 6 1.9447 -6.0132 -2.0506 20 6 1.8053 -4.7831 -2.9099 21 7 2.9514 -3.8932 -2.6807 22 6 4.2146 -4.6450 -2.7024 23 6 5.3745 -3.6920 -2.4020 24 8 5.3641 -2.6213 -3.3501 25 6 4.1485 -1.8677 -3.3544 26 6 2.9763 -2.8020 -3.6656 27 7 1.7716 -3.5653 -0.3128 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2112 -1.5286 1.4597 30 1 -0.5677 -5.6270 0.8642 31 1 1.4824 -7.0707 1.1381 32 1 2.3032 -9.1633 0.1389 33 1 2.8908 -9.2437 -2.2490 34 1 2.6545 -7.2360 -3.6507 35 1 0.8833 -4.2621 -2.6516 36 1 1.7759 -5.0746 -3.9598 37 1 4.3553 -5.0905 -3.6873 38 1 4.1843 -5.4308 -1.9477 39 1 6.3180 -4.2328 -2.4741 40 1 5.2624 -3.2881 -1.3957 41 1 4.0001 -1.4110 -2.3759 42 1 4.2058 -1.0889 -4.1148 43 1 2.0419 -2.2434 -3.6136 44 1 3.0977 -3.2174 -4.6660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241984164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:29:36 Heat of formation + Delta-G solvation = 32.836925 kcal Electronic energy + Delta-G solvation = -28555.415858 eV Core-core repulsion = 24858.609622 eV Total energy + Delta-G solvation = -3696.806236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.90098 -38.86635 -38.23441 -35.37293 -34.11309 -32.77194 -31.42555 -31.35216 -30.61851 -28.82198 -27.48132 -26.03047 -24.15943 -23.64201 -23.23479 -22.10010 -21.19783 -20.49872 -19.68479 -17.64075 -16.37066 -16.10816 -15.96378 -15.64353 -15.18231 -15.12892 -15.06091 -14.74791 -14.61257 -14.31887 -13.90635 -13.55847 -13.52197 -12.97016 -12.83648 -12.66196 -12.24216 -11.84815 -11.78644 -11.62572 -11.44642 -11.25441 -11.07879 -11.04352 -10.91650 -10.77840 -10.56436 -10.31797 -10.12885 -9.70761 -9.66110 -9.31160 -9.24993 -8.61825 -8.51238 -7.63921 -7.47653 -7.19861 -6.94838 -4.64148 1.46346 1.61686 2.50965 2.89074 3.01267 3.06239 3.11921 3.81458 3.96365 4.22289 4.44502 4.53530 5.01082 5.06528 5.12391 5.24333 5.34783 5.40095 5.49360 5.55830 5.57184 5.64365 5.68843 5.80306 5.88075 5.95341 5.97576 6.02820 6.12941 6.18308 6.21888 6.26411 6.29414 6.39504 6.43024 6.48832 6.69250 6.71975 6.94514 7.00757 7.08028 7.24352 7.32497 7.45949 7.54036 7.60301 7.66739 8.21955 8.50932 8.56830 9.20842 9.70944 10.03866 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011229 B = 0.006089 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.039481 B = 4597.513412 C = 6528.200690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.413 4.413 8 H 0.087 0.913 9 C 0.225 3.775 10 C 0.013 3.987 11 N -0.449 5.449 12 C -0.081 4.081 13 C 0.114 3.886 14 C 0.011 3.989 15 C -0.108 4.108 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.062 4.062 20 C 0.111 3.889 21 N -0.481 5.481 22 C 0.026 3.974 23 C 0.067 3.933 24 O -0.395 6.395 25 C 0.065 3.935 26 C 0.029 3.971 27 N -0.454 5.454 28 H 0.285 0.715 29 H 0.158 0.842 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 -7.639 -5.305 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.447 4.447 8 H 0.105 0.895 9 C 0.095 3.905 10 C -0.157 4.157 11 N -0.161 5.161 12 C -0.238 4.238 13 C -0.030 4.030 14 C 0.009 3.991 15 C -0.127 4.127 16 C -0.141 4.141 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.063 4.063 20 C -0.016 4.016 21 N -0.205 5.205 22 C -0.102 4.102 23 C -0.010 4.010 24 O -0.313 6.313 25 C -0.011 4.011 26 C -0.100 4.100 27 N -0.171 5.171 28 H 0.096 0.904 29 H 0.175 0.825 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.442 -7.223 -4.959 10.314 hybrid contribution -0.111 0.245 -0.719 0.768 sum 5.332 -6.978 -5.678 10.458 Atomic orbital electron populations 1.69694 1.07585 1.29815 1.35239 1.25948 0.94863 1.01551 0.92177 0.86128 0.80550 0.79930 0.79243 1.19362 1.19955 1.18208 1.19214 0.96104 0.88244 1.41183 0.89483 1.19427 0.91045 0.91679 0.88326 1.23927 0.96858 0.95162 0.99742 1.67917 1.30001 0.99002 1.19195 1.22632 0.98970 0.96589 1.05656 1.20368 0.93938 0.92499 0.96203 1.18549 0.96310 0.92044 0.92223 1.21212 0.99673 0.92052 0.99767 1.20979 1.00293 0.97614 0.95176 1.21013 1.01607 0.97976 0.94164 1.20925 1.00721 0.92707 0.99435 1.19784 0.98407 0.94314 0.93838 1.20863 0.95637 0.90641 0.94475 1.62218 1.00514 1.09795 1.47924 1.22707 0.90830 0.96926 0.99733 1.22588 0.97210 0.87907 0.93280 1.87876 1.37435 1.45642 1.60394 1.22642 0.82842 0.92896 1.02756 1.22660 1.00434 0.94447 0.92425 1.69461 1.31563 0.96883 1.19226 0.90386 0.82529 0.85808 0.85957 0.86366 0.86598 0.86736 0.90067 0.95622 0.95735 0.89800 0.89632 0.91775 0.90873 0.89428 0.89771 0.95695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.19 10.86 55.55 0.60 -18.58 16 2 C 0.07 1.70 5.25 -17.34 -0.09 1.61 16 3 Si 0.92 17.50 29.57 -169.99 -5.03 12.48 16 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.41 -10.17 9.29 -37.73 -0.35 -10.52 16 8 H 0.09 2.12 7.87 -52.49 -0.41 1.71 16 9 C 0.23 5.74 6.38 -84.84 -0.54 5.20 16 10 C 0.01 0.34 9.84 -16.55 -0.16 0.18 16 11 N -0.45 -11.28 10.47 -12.06 -0.13 -11.40 16 12 C -0.08 -1.85 10.66 -16.73 -0.18 -2.03 16 13 C 0.11 2.53 5.48 -82.76 -0.45 2.07 16 14 C 0.01 0.20 5.62 -104.90 -0.59 -0.39 16 15 C -0.11 -1.70 9.47 -39.24 -0.37 -2.08 16 16 C -0.12 -1.60 10.03 -39.63 -0.40 -2.00 16 17 C -0.13 -1.62 10.04 -39.51 -0.40 -2.02 16 18 C -0.12 -1.66 8.80 -39.63 -0.35 -2.01 16 19 C -0.06 -1.04 3.69 -104.28 -0.38 -1.43 16 20 C 0.11 1.94 4.51 -4.98 -0.02 1.92 16 21 N -0.48 -8.57 3.20 -235.74 -0.75 -9.32 16 22 C 0.03 0.42 4.93 -3.71 -0.02 0.40 16 23 C 0.07 1.05 7.01 37.21 0.26 1.31 16 24 O -0.39 -6.64 10.83 -35.23 -0.38 -7.02 16 25 C 0.07 1.07 7.01 37.21 0.26 1.33 16 26 C 0.03 0.48 5.63 -3.71 -0.02 0.46 16 27 N -0.45 -10.80 7.75 -7.51 -0.06 -10.85 16 28 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 29 H 0.16 4.13 6.24 -52.49 -0.33 3.80 16 30 H 0.12 2.51 8.01 -52.49 -0.42 2.09 16 31 H 0.12 1.84 8.01 -52.49 -0.42 1.42 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.11 1.39 8.03 -52.49 -0.42 0.97 16 35 H 0.08 1.66 7.37 -51.93 -0.38 1.27 16 36 H 0.03 0.40 7.93 -51.93 -0.41 -0.01 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 1.40 6.32 -51.93 -0.33 1.07 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -27.11 358.82 -10.21 -37.32 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.06 Total: 9.96 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.81 Total: -7.99 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.34 Total: -50.16 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.38 Total: -7.02 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.11 -10.21 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241984164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.156 kcal (2) G-P(sol) polarization free energy of solvation -27.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds