Wall clock time and date at job start Sat Apr 11 2020 01:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48499 * 109.47078 * 240.00217 * 3 2 1 5 5 H 1.48506 * 109.46650 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47327 * 119.99848 * 3 2 1 7 7 C 1.40167 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99658 * 180.02562 * 7 2 1 9 9 C 1.40728 * 119.99851 * 359.72573 * 7 2 1 10 10 N 1.34086 * 120.58215 * 351.81952 * 9 7 2 11 11 C 1.31520 * 119.86437 * 180.02562 * 10 9 7 12 12 C 1.39021 * 121.14146 * 359.97438 * 11 10 9 13 13 N 1.31910 * 121.22222 * 359.97438 * 12 11 10 14 14 C 1.33041 * 120.03263 * 359.74052 * 13 12 11 15 15 C 1.47591 * 120.55068 * 180.27443 * 14 13 12 16 16 C 1.40012 * 120.59559 * 130.08580 * 15 14 13 17 17 C 1.38358 * 118.33729 * 179.75999 * 16 15 14 18 18 C 1.38363 * 119.46595 * 0.53924 * 17 16 15 19 19 N 1.31947 * 121.19400 * 359.70111 * 18 17 16 20 20 C 1.32163 * 121.80318 * 0.02562 * 19 18 17 21 21 O 1.35495 * 119.79993 * 180.02562 * 20 19 18 22 22 C 1.42904 * 117.00012 * 359.97438 * 21 20 19 23 23 C 1.52996 * 109.47333 * 270.00052 * 22 21 20 24 24 C 1.52995 * 109.47088 * 179.97438 * 23 22 21 25 25 C 1.52992 * 109.47410 * 60.00316 * 24 23 22 26 26 C 1.53006 * 109.47073 * 300.00050 * 25 24 23 27 27 C 1.52995 * 109.47043 * 59.99725 * 26 25 24 28 28 H 0.96997 * 119.99755 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.43071 * 180.02562 * 11 10 9 30 30 H 1.08003 * 119.39119 * 180.02562 * 12 11 10 31 31 H 1.07993 * 120.83369 * 359.97438 * 16 15 14 32 32 H 1.08000 * 120.26628 * 180.23694 * 17 16 15 33 33 H 1.08002 * 119.40251 * 179.72492 * 18 17 16 34 34 H 1.08998 * 109.47274 * 30.00847 * 22 21 20 35 35 H 1.08990 * 109.47292 * 300.00024 * 23 22 21 36 36 H 1.09001 * 109.46615 * 59.99875 * 23 22 21 37 37 H 1.09002 * 109.47452 * 299.99966 * 24 23 22 38 38 H 1.09000 * 109.47297 * 180.02562 * 24 23 22 39 39 H 1.09005 * 109.47570 * 180.02562 * 25 24 23 40 40 H 1.08999 * 109.47418 * 59.99835 * 25 24 23 41 41 H 1.09002 * 109.46655 * 299.99656 * 26 25 24 42 42 H 1.09001 * 109.46951 * 180.02562 * 26 25 24 43 43 H 1.08998 * 109.46746 * 180.02562 * 27 26 25 44 44 H 1.08999 * 109.46965 * 60.00512 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0947 1.6963 -1.2125 5 1 1.2760 2.7464 -0.0006 6 1 3.0947 1.6963 1.2124 7 6 2.0078 -1.2139 -0.0005 8 1 3.0878 -1.2138 -0.0001 9 6 1.3041 -2.4326 0.0047 10 7 -0.0258 -2.4517 0.1746 11 6 -0.6692 -3.5988 0.1776 12 6 0.0056 -4.8021 0.0066 13 7 1.3131 -4.8344 -0.1649 14 6 2.0107 -3.7016 -0.1818 15 6 3.4732 -3.7241 -0.3789 16 6 4.0759 -2.8991 -1.3362 17 6 5.4511 -2.9542 -1.4784 18 6 6.1829 -3.8218 -0.6871 19 7 5.5938 -4.5943 0.2058 20 6 4.2846 -4.5773 0.3859 21 8 3.7221 -5.3876 1.3148 22 6 4.6035 -6.2310 2.0591 23 6 4.7673 -7.5666 1.3309 24 6 5.7114 -8.4693 2.1275 25 6 5.1274 -8.7160 3.5199 26 6 4.9635 -7.3804 4.2481 27 6 4.0194 -6.4777 3.4516 28 1 -0.4849 0.8400 -0.0004 29 1 -1.7405 -3.6060 0.3145 30 1 -0.5510 -5.7276 0.0135 31 1 3.4828 -2.2338 -1.9460 32 1 5.9488 -2.3286 -2.2046 33 1 7.2558 -3.8672 -0.8020 34 1 5.5756 -5.7472 2.1539 35 1 3.7953 -8.0504 1.2363 36 1 5.1838 -7.3909 0.3391 37 1 6.6835 -7.9853 2.2218 38 1 5.8285 -9.4206 1.6085 39 1 5.8003 -9.3587 4.0876 40 1 4.1553 -9.2000 3.4257 41 1 5.9356 -6.8963 4.3424 42 1 4.5478 -7.5562 5.2403 43 1 3.9030 -5.5261 3.9702 44 1 3.0473 -6.9617 3.3574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242229889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:29:46 Heat of formation + Delta-G solvation = -0.572646 kcal Electronic energy + Delta-G solvation = -27647.113594 eV Core-core repulsion = 23948.858610 eV Total energy + Delta-G solvation = -3698.254984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62784 -40.42050 -39.63122 -37.59469 -36.00838 -34.59637 -33.48504 -32.16156 -31.74693 -31.06707 -29.96790 -28.04333 -25.40203 -24.76422 -23.74246 -23.57343 -22.76036 -22.58211 -20.76152 -19.58270 -19.21910 -18.09303 -17.68395 -17.20540 -16.78289 -16.52653 -16.05510 -15.99200 -15.69160 -15.20915 -14.97945 -14.85708 -14.57197 -14.39295 -14.21086 -13.91500 -13.76861 -13.62274 -13.30057 -13.19496 -13.00313 -12.90426 -12.57759 -12.38888 -12.11348 -12.05434 -11.97929 -11.72844 -11.56550 -11.48005 -11.32968 -11.09585 -10.97838 -10.61679 -10.50439 -9.75092 -9.35399 -8.98010 -8.41997 -6.65710 0.05782 0.47477 0.72293 1.22763 1.37831 1.51416 1.55013 2.14794 2.20463 2.73309 2.95382 3.42296 3.69864 3.73072 3.74781 3.82170 3.99417 4.12412 4.16812 4.20149 4.23963 4.26704 4.32346 4.48207 4.49253 4.51801 4.56765 4.60362 4.65732 4.77578 4.91373 4.99339 5.02508 5.06022 5.08149 5.14531 5.16419 5.19463 5.25945 5.27198 5.33706 5.47446 5.51283 5.72151 5.80848 6.06747 6.42785 6.54704 6.69596 7.01485 7.36861 7.90242 8.22716 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.004182 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.676820 B = 6693.802719 C = 7552.376277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.023 3.977 3 Si 0.987 3.013 4 H -0.244 1.244 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.101 0.899 9 C 0.194 3.806 10 N -0.496 5.496 11 C 0.078 3.922 12 C -0.134 4.134 13 N -0.416 5.416 14 C -0.027 4.027 15 C -0.082 4.082 16 C -0.040 4.040 17 C -0.200 4.200 18 C 0.123 3.877 19 N -0.549 5.549 20 C 0.312 3.688 21 O -0.307 6.307 22 C 0.086 3.914 23 C -0.124 4.124 24 C -0.107 4.107 25 C -0.119 4.119 26 C -0.106 4.106 27 C -0.116 4.116 28 H 0.289 0.711 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.135 0.865 32 H 0.174 0.826 33 H 0.198 0.802 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.814 -6.795 2.563 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.202 4.202 3 Si 0.805 3.195 4 H -0.167 1.167 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.445 4.445 8 H 0.119 0.881 9 C 0.068 3.932 10 N -0.213 5.213 11 C -0.090 4.090 12 C -0.293 4.293 13 N -0.128 5.128 14 C -0.177 4.177 15 C -0.086 4.086 16 C -0.066 4.066 17 C -0.220 4.220 18 C -0.033 4.033 19 N -0.273 5.273 20 C 0.133 3.867 21 O -0.214 6.214 22 C 0.030 3.970 23 C -0.162 4.162 24 C -0.144 4.144 25 C -0.156 4.156 26 C -0.144 4.144 27 C -0.154 4.154 28 H 0.100 0.900 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.153 0.847 32 H 0.191 0.809 33 H 0.215 0.785 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.719 -7.301 3.184 15.007 hybrid contribution -1.082 1.084 -0.540 1.624 sum 11.637 -6.217 2.644 13.456 Atomic orbital electron populations 1.70119 1.09251 1.30425 1.26178 1.27184 0.95758 1.04897 0.92326 0.85172 0.78857 0.74630 0.80818 1.16741 1.18889 1.18412 1.19961 0.95436 0.89434 1.39715 0.88076 1.20814 0.89221 0.92957 0.90233 1.69502 1.08117 1.25817 1.17886 1.23817 1.01126 0.90051 0.93987 1.22829 0.91194 0.98639 1.16678 1.67831 1.08146 1.29908 1.06906 1.21313 0.92862 0.89778 1.13721 1.18452 0.91106 0.99846 0.99243 1.21723 0.95916 0.95123 0.93837 1.22200 0.92891 1.02979 1.03918 1.23089 1.01482 0.89632 0.89087 1.67247 1.08945 1.27408 1.23702 1.20005 0.88115 0.89538 0.88999 1.86395 1.36740 1.50806 1.47474 1.22493 0.93656 0.89924 0.90954 1.21845 1.00265 0.95135 0.99002 1.21459 0.98120 0.99129 0.95740 1.21589 1.01629 0.96920 0.95486 1.21478 0.99084 0.95196 0.98603 1.21639 1.00084 1.00430 0.93224 0.90041 0.82811 0.83193 0.84671 0.80865 0.78527 0.90067 0.92991 0.93179 0.91080 0.90401 0.89349 0.92199 0.90955 0.89868 0.92770 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.98 11.54 21.86 0.25 -37.73 16 2 C 0.02 1.10 5.50 85.33 0.47 1.57 16 3 Si 0.99 35.17 29.56 68.60 2.03 37.20 16 4 H -0.24 -8.04 7.11 99.48 0.71 -7.34 16 5 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.42 -21.52 7.94 23.35 0.19 -21.33 16 8 H 0.10 4.89 5.84 -2.91 -0.02 4.87 16 9 C 0.19 10.83 6.67 41.55 0.28 11.11 16 10 N -0.50 -28.03 8.13 -184.15 -1.50 -29.52 16 11 C 0.08 3.92 11.17 84.93 0.95 4.87 16 12 C -0.13 -6.59 11.17 84.87 0.95 -5.64 16 13 N -0.42 -22.05 9.90 -178.78 -1.77 -23.82 16 14 C -0.03 -1.41 6.21 43.57 0.27 -1.14 16 15 C -0.08 -3.80 5.19 -19.85 -0.10 -3.90 16 16 C -0.04 -1.52 7.89 22.73 0.18 -1.34 16 17 C -0.20 -5.72 10.09 22.33 0.23 -5.49 16 18 C 0.12 3.45 11.17 84.71 0.95 4.40 16 19 N -0.55 -19.57 8.64 -307.84 -2.66 -22.23 16 20 C 0.31 13.45 7.46 85.17 0.64 14.09 16 21 O -0.31 -13.48 8.81 -87.96 -0.77 -14.26 16 22 C 0.09 2.87 2.38 30.59 0.07 2.95 16 23 C -0.12 -3.67 5.54 30.59 0.17 -3.50 16 24 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 25 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 26 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 27 C -0.12 -3.39 5.57 30.59 0.17 -3.22 16 28 H 0.29 13.25 8.29 -92.71 -0.77 12.48 16 29 H 0.15 6.52 8.06 -2.91 -0.02 6.50 16 30 H 0.15 6.29 8.06 -2.91 -0.02 6.27 16 31 H 0.14 5.28 7.46 -2.91 -0.02 5.25 16 32 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.20 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.08 2.69 6.98 -2.39 -0.02 2.68 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.12 361.85 2.53 -67.59 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 1.01 Total: 35.36 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 5.94 Total: -12.58 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -5.67 Total: -113.31 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.77 Total: -14.26 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Total: -70.12 2.53 -67.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242229889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.022 kcal (2) G-P(sol) polarization free energy of solvation -70.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds