Wall clock time and date at job start Sat Apr 11 2020 01:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38231 * 120.00333 * 2 1 4 4 C 1.38236 * 119.99976 * 179.97438 * 3 2 1 5 5 C 1.38223 * 120.00214 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00108 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47060 * 20.00097 * 6 5 4 8 8 N 1.46500 * 109.47209 * 140.00075 * 6 5 4 9 9 C 1.34777 * 120.00075 * 204.99847 * 8 6 5 10 10 O 1.21587 * 119.99681 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00044 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99839 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46973 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00019 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99793 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00489 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99824 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46928 * 60.00132 * 17 15 13 19 19 H 1.48498 * 109.47097 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46872 * 299.99994 * 17 15 13 21 21 C 1.50703 * 109.47064 * 260.00133 * 6 5 4 22 22 C 1.38221 * 119.61741 * 124.72922 * 21 6 5 23 23 C 1.38631 * 119.16156 * 179.75248 * 22 21 6 24 24 C 1.38679 * 118.41891 * 0.50987 * 23 22 21 25 25 C 1.38181 * 119.15926 * 359.72912 * 24 23 22 26 26 N 1.31855 * 119.61618 * 304.99605 * 21 6 5 27 27 C 1.38238 * 120.00223 * 0.25611 * 5 4 3 28 28 C 1.38235 * 119.99769 * 359.46841 * 27 5 4 29 29 H 1.08991 * 109.46871 * 90.00177 * 1 2 3 30 30 H 1.09002 * 109.47310 * 210.00092 * 1 2 3 31 31 H 1.08992 * 109.46815 * 330.00195 * 1 2 3 32 32 H 1.08002 * 119.99648 * 359.97305 * 3 2 1 33 33 H 1.07999 * 119.99308 * 179.97438 * 4 3 2 34 34 H 0.96997 * 120.00274 * 24.99818 * 8 6 5 35 35 H 0.96997 * 120.00305 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47120 * 300.00352 * 12 11 9 37 37 H 1.09002 * 109.47331 * 59.99749 * 12 11 9 38 38 H 0.96998 * 120.00287 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.42134 * 359.97438 * 22 21 6 40 40 H 1.08000 * 120.79504 * 180.25728 * 23 22 21 41 41 H 1.07999 * 120.42025 * 179.70977 * 24 23 22 42 42 H 1.08007 * 119.61321 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.00536 * 179.72748 * 27 5 4 44 44 H 1.08001 * 120.00416 * 180.27267 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0016 7 1 6.1421 0.9659 0.3522 8 7 6.2671 -1.0574 0.8904 9 6 7.4890 -0.9565 1.4499 10 8 8.1860 0.0123 1.2173 11 7 7.9381 -1.9290 2.2679 12 6 9.2661 -1.8190 2.8765 13 6 9.5247 -3.0269 3.7396 14 1 8.7747 -3.7990 3.8266 15 6 10.7189 -3.1462 4.4184 16 7 11.6321 -2.2057 4.3130 17 14 11.0398 -4.6439 5.4879 18 1 10.9773 -5.8705 4.6533 19 1 12.3859 -4.5323 6.1049 20 1 10.0109 -4.7189 6.5560 21 6 6.2811 -0.2481 -1.3974 22 6 7.1542 0.6517 -1.9792 23 6 7.6144 0.4116 -3.2647 24 6 7.1687 -0.7242 -3.9239 25 6 6.2915 -1.5757 -3.2800 26 7 5.8784 -1.3182 -2.0543 27 6 3.5806 -1.1973 -0.0032 28 6 2.1982 -1.1973 0.0020 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6583 2.1324 -0.0004 33 1 4.1206 2.1323 0.0001 34 1 5.7109 -1.8301 1.0762 35 1 7.3819 -2.7017 2.4537 36 1 10.0216 -1.7645 2.0926 37 1 9.3119 -0.9181 3.4884 38 1 12.4721 -2.2895 4.7908 39 1 7.4767 1.5288 -1.4379 40 1 8.3004 1.0950 -3.7430 41 1 7.5028 -0.9402 -4.9280 42 1 5.9400 -2.4626 -3.7864 43 1 4.1205 -2.1326 -0.0068 44 1 1.6582 -2.1325 0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350032609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:28:45 Heat of formation + Delta-G solvation = 24.243766 kcal Electronic energy + Delta-G solvation = -26467.875553 eV Core-core repulsion = 22770.696689 eV Total energy + Delta-G solvation = -3697.178864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63710 -39.35814 -38.84816 -35.51499 -34.02993 -32.61411 -32.36205 -32.12763 -31.28820 -30.91794 -28.27400 -26.85677 -25.08161 -23.59487 -22.86900 -22.63669 -22.01120 -20.61771 -19.97668 -18.20258 -17.05643 -16.75171 -16.28006 -15.84259 -15.67145 -15.37436 -15.17216 -14.81932 -14.57318 -14.36350 -14.01394 -13.86417 -13.55389 -13.42016 -13.29412 -13.16342 -12.99701 -12.49110 -12.26001 -12.07180 -11.92206 -11.90426 -11.58301 -11.23619 -11.01613 -10.94565 -10.84942 -10.27568 -9.84225 -9.54761 -9.44182 -9.35668 -9.02416 -8.96555 -8.77307 -8.66899 -8.57383 -7.73701 -6.12613 -4.18944 1.02634 1.28578 1.32648 1.36621 3.27979 3.28819 3.32886 3.36921 3.65454 3.86341 3.98190 4.34734 4.35514 4.57627 4.70904 4.78247 4.84703 4.93817 4.95767 5.08938 5.12750 5.16384 5.23348 5.23846 5.36932 5.40178 5.49485 5.56221 5.62874 5.66499 5.77506 5.95149 6.00730 6.13710 6.20897 6.31825 6.49054 6.50344 6.70082 6.85667 6.92086 7.14933 7.54605 7.57961 7.60335 7.93345 8.02966 8.07600 8.79281 8.96742 9.35466 9.50730 10.97622 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.003154 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.129693 B = 8876.198526 C =10372.708345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.123 4.123 4 C -0.102 4.102 5 C -0.088 4.088 6 C 0.261 3.739 7 H 0.108 0.892 8 N -0.741 5.741 9 C 0.695 3.305 10 O -0.599 6.599 11 N -0.728 5.728 12 C 0.269 3.731 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.124 3.876 22 C -0.144 4.144 23 C -0.078 4.078 24 C -0.176 4.176 25 C 0.094 3.906 26 N -0.466 5.466 27 C -0.081 4.081 28 C -0.122 4.122 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.394 0.606 35 H 0.386 0.614 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.266 0.734 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.152 0.848 43 H 0.126 0.874 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.843 4.682 -14.729 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.121 4.121 5 C -0.089 4.089 6 C 0.154 3.846 7 H 0.126 0.874 8 N -0.398 5.398 9 C 0.395 3.605 10 O -0.479 6.479 11 N -0.379 5.379 12 C 0.148 3.852 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.524 5.524 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.016 4.016 22 C -0.165 4.165 23 C -0.104 4.104 24 C -0.196 4.196 25 C -0.064 4.064 26 N -0.175 5.175 27 C -0.100 4.100 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.229 0.771 35 H 0.218 0.782 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.169 0.831 43 H 0.144 0.856 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.509 5.046 -14.405 24.770 hybrid contribution 0.552 -0.989 0.192 1.149 sum -18.956 4.057 -14.213 24.038 Atomic orbital electron populations 1.20782 0.91407 1.02687 1.02144 1.19930 0.95939 0.93320 0.99606 1.20932 0.93876 0.97490 1.01833 1.20972 0.94243 0.97359 0.99511 1.19705 0.93775 0.93910 1.01510 1.18268 0.89061 0.93067 0.84215 0.87422 1.45180 1.18259 1.25115 1.51252 1.16139 0.80934 0.84033 0.79443 1.90852 1.57105 1.32934 1.66960 1.45701 1.21415 1.21935 1.48881 1.18961 0.76598 0.97253 0.92421 1.21199 1.02155 1.05688 1.28981 0.92004 1.24938 0.95694 0.96744 0.96611 1.69966 1.07162 1.33139 1.42090 0.86477 0.77484 0.82542 0.80407 1.20105 1.21093 1.20067 1.21498 0.93788 0.90471 0.95810 1.22004 0.97581 1.01212 0.95675 1.21567 0.97589 0.96830 0.94424 1.22107 0.99804 0.96223 1.01487 1.22685 0.94303 0.98560 0.90845 1.67380 1.23572 1.18411 1.08184 1.20929 0.93823 0.97818 0.97412 1.21005 0.94074 0.97458 1.01507 0.91347 0.91591 0.91658 0.86132 0.85855 0.77080 0.78153 0.95854 0.95713 0.92438 0.84499 0.84916 0.85110 0.83054 0.85571 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.10 -1.15 9.67 -39.59 -0.38 -1.53 16 5 C -0.09 -1.11 4.87 -104.63 -0.51 -1.61 16 6 C 0.26 3.81 2.49 -70.23 -0.18 3.64 16 7 H 0.11 1.65 7.17 -51.93 -0.37 1.28 16 8 N -0.74 -12.03 5.02 -60.96 -0.31 -12.34 16 9 C 0.69 14.72 8.52 -86.92 -0.74 13.98 16 10 O -0.60 -14.81 16.01 5.29 0.08 -14.72 16 11 N -0.73 -16.09 5.55 -66.42 -0.37 -16.46 16 12 C 0.27 7.33 5.43 -5.20 -0.03 7.30 16 13 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.12 1.82 5.71 -82.59 -0.47 1.35 16 22 C -0.14 -2.00 9.71 -39.44 -0.38 -2.39 16 23 C -0.08 -0.92 10.18 -39.27 -0.40 -1.31 16 24 C -0.18 -1.91 10.11 -39.44 -0.40 -2.31 16 25 C 0.09 1.12 11.18 -17.55 -0.20 0.92 16 26 N -0.47 -6.60 9.55 -9.47 -0.09 -6.69 16 27 C -0.08 -0.95 8.50 -39.58 -0.34 -1.29 16 28 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.12 1.19 8.04 -52.49 -0.42 0.77 16 34 H 0.39 5.53 6.90 -40.82 -0.28 5.25 16 35 H 0.39 7.42 8.33 -40.82 -0.34 7.08 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.14 1.81 7.95 -52.49 -0.42 1.39 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 43 H 0.13 1.45 6.93 -52.49 -0.36 1.08 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -34.29 378.79 -10.67 -44.96 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.95 Total: 11.18 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -5.46 Total: -2.05 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.03 Total: -61.21 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.08 Total: -14.72 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.29 -10.67 -44.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350032609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.205 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds