Wall clock time and date at job start Sat Apr 11 2020 01:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29029 * 124.91747 * 2 1 4 4 C 1.31778 * 117.12461 * 179.97438 * 3 2 1 5 5 C 1.50707 * 122.74764 * 180.02562 * 4 3 2 6 6 C 1.33632 * 114.50020 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.03568 * 179.97438 * 6 4 3 8 8 N 1.46506 * 109.47289 * 90.00197 * 7 6 4 9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00212 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99868 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47345 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46785 * 299.99793 * 13 12 11 15 15 C 1.52995 * 109.47144 * 59.99842 * 13 12 11 16 16 C 1.53000 * 109.47088 * 180.02562 * 13 12 11 17 17 C 1.50709 * 109.46762 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00030 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99382 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99162 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00279 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46788 * 90.00106 * 21 19 17 23 23 H 1.48504 * 109.46880 * 209.99774 * 21 19 17 24 24 H 1.48495 * 109.47282 * 329.99747 * 21 19 17 25 25 S 1.70972 * 124.91719 * 180.31033 * 2 1 3 26 26 H 1.08996 * 109.47105 * 89.97366 * 1 2 3 27 27 H 1.08996 * 109.47148 * 209.97740 * 1 2 3 28 28 H 1.08998 * 109.47275 * 329.97840 * 1 2 3 29 29 H 1.08998 * 109.46862 * 270.00077 * 5 4 3 30 30 H 1.08993 * 109.47111 * 29.99602 * 5 4 3 31 31 H 1.08992 * 109.46828 * 150.00165 * 5 4 3 32 32 H 1.09001 * 109.47438 * 329.99978 * 7 6 4 33 33 H 1.09004 * 109.47113 * 210.00234 * 7 6 4 34 34 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 35 35 H 0.97006 * 119.99964 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.47061 * 299.99794 * 12 11 9 37 37 H 1.08995 * 109.47328 * 60.00131 * 12 11 9 38 38 H 1.08997 * 109.47050 * 60.00193 * 14 13 12 39 39 H 1.08998 * 109.46910 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.47451 * 300.00514 * 14 13 12 41 41 H 1.08994 * 109.47689 * 60.00245 * 15 13 12 42 42 H 1.09010 * 109.46990 * 180.02562 * 15 13 12 43 43 H 1.09005 * 109.47153 * 299.99813 * 15 13 12 44 44 H 1.09003 * 109.46966 * 299.99187 * 16 13 12 45 45 H 1.08995 * 109.47269 * 60.00027 * 16 13 12 46 46 H 0.97006 * 119.99894 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0246 0.0012 6 6 3.9353 -0.4006 0.0015 7 6 5.3574 -0.8994 0.0018 8 7 5.8184 -1.0599 1.3831 9 6 7.0686 -1.4988 1.6296 10 8 7.8138 -1.7619 0.7056 11 7 7.4929 -1.6460 2.9003 12 6 8.8520 -2.1225 3.1683 13 6 9.0766 -2.2000 4.6797 14 6 8.8927 -0.8110 5.2945 15 6 8.0657 -3.1687 5.2965 16 6 10.4964 -2.6971 4.9595 17 6 10.7177 -2.7728 6.4483 18 1 9.9250 -2.4947 7.1270 19 6 11.9320 -3.1982 6.9438 20 7 12.1250 -3.2647 8.2431 21 14 13.3029 -3.6799 5.7700 22 1 14.1294 -2.4863 5.4578 23 1 14.1538 -4.7195 6.4027 24 1 12.7153 -4.2168 4.5164 25 16 2.4856 -1.4019 -0.0076 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 4.7673 2.3009 -1.0264 30 1 4.0903 2.8791 0.5149 31 1 5.4429 1.7221 0.5153 32 1 5.9948 -0.1803 -0.5127 33 1 5.4056 -1.8599 -0.5113 34 1 5.2235 -0.8510 2.1202 35 1 6.8982 -1.4364 3.6375 36 1 8.9829 -3.1122 2.7307 37 1 9.5722 -1.4326 2.7285 38 1 7.8815 -0.4565 5.0952 39 1 9.0532 -0.8661 6.3712 40 1 9.6128 -0.1209 4.8550 41 1 8.1967 -4.1582 4.8586 42 1 8.2255 -3.2236 6.3734 43 1 7.0544 -2.8141 5.0972 44 1 10.6278 -3.6865 4.5215 45 1 11.2162 -2.0066 4.5202 46 1 12.9794 -3.5636 8.5918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353638376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:28:48 Heat of formation + Delta-G solvation = -7.095365 kcal Electronic energy + Delta-G solvation = -24841.062935 eV Core-core repulsion = 21277.969055 eV Total energy + Delta-G solvation = -3563.093879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51097 -39.84521 -37.43152 -35.39423 -33.68136 -33.10516 -32.05812 -29.86935 -29.24540 -27.77684 -26.55633 -26.23429 -24.63112 -23.14316 -22.40104 -20.76690 -19.53663 -18.75059 -18.34595 -17.64190 -16.87699 -16.32092 -15.64956 -15.50623 -15.19922 -14.52139 -14.37871 -14.11921 -13.91235 -13.82130 -13.67963 -13.51644 -13.33952 -13.19733 -12.79763 -12.71185 -12.46653 -12.36802 -12.27568 -12.20499 -11.55557 -11.24129 -11.11947 -11.00932 -10.61432 -10.48078 -10.27658 -10.04334 -9.96726 -9.75776 -9.71110 -9.50843 -9.31078 -9.03620 -8.98902 -8.66002 -8.53195 -6.04043 -4.01234 0.17638 0.88429 1.31487 2.26601 2.88430 3.29763 3.32136 3.40116 3.44419 3.61597 4.31075 4.38198 4.46083 4.51657 4.66825 4.87782 4.94408 5.18238 5.25652 5.28695 5.30779 5.34035 5.39926 5.47053 5.54789 5.56532 5.64206 5.89761 6.12188 6.12417 6.16452 6.27199 6.33181 6.50469 6.59782 6.72039 6.87785 6.97584 7.01700 7.05745 7.20931 7.31782 7.37359 7.78329 8.07403 8.52815 8.67366 8.99967 9.58680 11.08636 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.027350 B = 0.002132 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.527221 B =13128.184087 C =13321.463796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.051 3.949 3 N -0.475 5.475 4 C 0.093 3.907 5 C -0.084 4.084 6 C -0.255 4.255 7 C 0.224 3.776 8 N -0.749 5.749 9 C 0.702 3.298 10 O -0.593 6.593 11 N -0.735 5.735 12 C 0.145 3.855 13 C -0.063 4.063 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.002 4.002 17 C -0.510 4.510 18 H 0.078 0.922 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 S 0.137 5.863 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.396 0.604 35 H 0.395 0.605 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.018 0.982 45 H 0.014 0.986 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.626 7.033 -16.977 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.226 4.226 3 N -0.191 5.191 4 C -0.041 4.041 5 C -0.144 4.144 6 C -0.376 4.376 7 C 0.097 3.903 8 N -0.406 5.406 9 C 0.402 3.598 10 O -0.472 6.472 11 N -0.390 5.390 12 C 0.021 3.979 13 C -0.063 4.063 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.040 4.040 17 C -0.548 4.548 18 H 0.096 0.904 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.703 3.297 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 S 0.394 5.606 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.229 0.771 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.037 0.963 45 H 0.032 0.968 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.266 6.134 -17.714 29.879 hybrid contribution 0.802 0.576 0.171 1.003 sum -22.464 6.711 -17.543 29.282 Atomic orbital electron populations 1.20481 0.84993 1.04436 1.04049 1.27075 1.01887 0.91336 1.02325 1.66213 1.04392 1.31684 1.16777 1.20292 0.90220 0.94078 0.99477 1.20453 0.96013 0.94567 1.03324 1.25671 0.99729 0.95879 1.16325 1.19234 0.86213 1.01448 0.83369 1.45182 1.14107 1.73368 1.07971 1.15947 0.81473 0.78418 0.83956 1.90923 1.55113 1.57660 1.43477 1.45326 1.17013 1.71355 1.05329 1.21512 0.80452 0.99059 0.96872 1.20698 0.98812 0.96099 0.90710 1.21771 0.98553 0.95468 1.02749 1.21765 0.95718 0.98299 1.02731 1.19593 0.90303 0.95888 0.98206 1.21078 0.99756 1.44157 0.89835 0.90412 1.25008 0.98462 0.95200 0.94856 1.69904 1.24615 1.48104 1.11678 0.86850 0.82438 0.78612 0.81831 1.20376 1.21531 1.18955 1.84111 0.97052 1.11645 1.67826 0.89414 0.89909 0.89108 0.90275 0.90344 0.90196 0.89455 0.90469 0.77075 0.76978 0.91988 0.91963 0.95091 0.90923 0.93389 0.93392 0.90925 0.95097 0.96326 0.96763 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.46 36.00 0.38 0.02 16 2 C 0.05 0.41 7.39 -13.46 -0.10 0.31 16 3 N -0.48 -4.72 10.53 -8.06 -0.08 -4.81 16 4 C 0.09 0.87 6.74 -84.23 -0.57 0.30 16 5 C -0.08 -0.65 9.82 36.01 0.35 -0.30 16 6 C -0.25 -2.26 5.96 -35.92 -0.21 -2.48 16 7 C 0.22 2.19 5.60 -5.19 -0.03 2.17 16 8 N -0.75 -7.93 5.55 -66.41 -0.37 -8.30 16 9 C 0.70 10.15 8.57 -86.92 -0.74 9.40 16 10 O -0.59 -10.98 16.34 5.29 0.09 -10.90 16 11 N -0.74 -10.17 4.96 -65.23 -0.32 -10.49 16 12 C 0.14 2.42 4.56 -4.04 -0.02 2.40 16 13 C -0.06 -1.13 0.54 -154.51 -0.08 -1.22 16 14 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 15 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 16 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 17 C -0.51 -13.59 8.20 -34.44 -0.28 -13.88 16 18 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 19 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 20 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 21 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 25 S 0.14 1.04 23.18 -107.50 -2.49 -1.45 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.61 7.35 -51.93 -0.38 0.23 16 32 H 0.09 0.87 7.43 -51.93 -0.39 0.49 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.40 3.43 8.48 -40.82 -0.35 3.09 16 35 H 0.40 4.62 6.18 -40.82 -0.25 4.36 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 39 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.40 6.62 -51.92 -0.34 1.06 16 43 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 44 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 45 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 382.07 15.07 5.76 5.76 Total: -1.00 -32.84 382.07 -9.45 -42.29 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.24 Total: 2.88 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.89 Total: -5.43 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.00 Total: -49.99 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.84 -9.45 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353638376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.197 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds