Wall clock time and date at job start Sat Apr 11 2020 01:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29029 * 124.91747 * 2 1 4 4 C 1.31778 * 117.12461 * 179.97438 * 3 2 1 5 5 C 1.50707 * 122.74764 * 180.02562 * 4 3 2 6 6 C 1.33632 * 114.50020 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.03568 * 179.97438 * 6 4 3 8 8 N 1.46506 * 109.47289 * 90.00197 * 7 6 4 9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00212 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99868 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47345 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46785 * 299.99793 * 13 12 11 15 15 C 1.52995 * 109.47144 * 59.99842 * 13 12 11 16 16 C 1.53000 * 109.47088 * 180.02562 * 13 12 11 17 17 C 1.50709 * 109.46762 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00030 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99382 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99162 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00279 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46788 * 90.00106 * 21 19 17 23 23 H 1.48504 * 109.46880 * 209.99774 * 21 19 17 24 24 H 1.48495 * 109.47282 * 329.99747 * 21 19 17 25 25 S 1.70972 * 124.91719 * 180.31033 * 2 1 3 26 26 H 1.08996 * 109.47105 * 89.97366 * 1 2 3 27 27 H 1.08996 * 109.47148 * 209.97740 * 1 2 3 28 28 H 1.08998 * 109.47275 * 329.97840 * 1 2 3 29 29 H 1.08998 * 109.46862 * 270.00077 * 5 4 3 30 30 H 1.08993 * 109.47111 * 29.99602 * 5 4 3 31 31 H 1.08992 * 109.46828 * 150.00165 * 5 4 3 32 32 H 1.09001 * 109.47438 * 329.99978 * 7 6 4 33 33 H 1.09004 * 109.47113 * 210.00234 * 7 6 4 34 34 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 35 35 H 0.97006 * 119.99964 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.47061 * 299.99794 * 12 11 9 37 37 H 1.08995 * 109.47328 * 60.00131 * 12 11 9 38 38 H 1.08997 * 109.47050 * 60.00193 * 14 13 12 39 39 H 1.08998 * 109.46910 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.47451 * 300.00514 * 14 13 12 41 41 H 1.08994 * 109.47689 * 60.00245 * 15 13 12 42 42 H 1.09010 * 109.46990 * 180.02562 * 15 13 12 43 43 H 1.09005 * 109.47153 * 299.99813 * 15 13 12 44 44 H 1.09003 * 109.46966 * 299.99187 * 16 13 12 45 45 H 1.08995 * 109.47269 * 60.00027 * 16 13 12 46 46 H 0.97006 * 119.99894 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0246 0.0012 6 6 3.9353 -0.4006 0.0015 7 6 5.3574 -0.8994 0.0018 8 7 5.8184 -1.0599 1.3831 9 6 7.0686 -1.4988 1.6296 10 8 7.8138 -1.7619 0.7056 11 7 7.4929 -1.6460 2.9003 12 6 8.8520 -2.1225 3.1683 13 6 9.0766 -2.2000 4.6797 14 6 8.8927 -0.8110 5.2945 15 6 8.0657 -3.1687 5.2965 16 6 10.4964 -2.6971 4.9595 17 6 10.7177 -2.7728 6.4483 18 1 9.9250 -2.4947 7.1270 19 6 11.9320 -3.1982 6.9438 20 7 12.1250 -3.2647 8.2431 21 14 13.3029 -3.6799 5.7700 22 1 14.1294 -2.4863 5.4578 23 1 14.1538 -4.7195 6.4027 24 1 12.7153 -4.2168 4.5164 25 16 2.4856 -1.4019 -0.0076 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 4.7673 2.3009 -1.0264 30 1 4.0903 2.8791 0.5149 31 1 5.4429 1.7221 0.5153 32 1 5.9948 -0.1803 -0.5127 33 1 5.4056 -1.8599 -0.5113 34 1 5.2235 -0.8510 2.1202 35 1 6.8982 -1.4364 3.6375 36 1 8.9829 -3.1122 2.7307 37 1 9.5722 -1.4326 2.7285 38 1 7.8815 -0.4565 5.0952 39 1 9.0532 -0.8661 6.3712 40 1 9.6128 -0.1209 4.8550 41 1 8.1967 -4.1582 4.8586 42 1 8.2255 -3.2236 6.3734 43 1 7.0544 -2.8141 5.0972 44 1 10.6278 -3.6865 4.5215 45 1 11.2162 -2.0066 4.5202 46 1 12.9794 -3.5636 8.5918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353638376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:28:47 Heat of formation + Delta-G solvation = -29.420247 kcal Electronic energy + Delta-G solvation = -24842.031014 eV Core-core repulsion = 21277.969055 eV Total energy + Delta-G solvation = -3564.061959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32928 -40.83710 -38.85877 -36.32661 -35.19221 -34.13483 -33.61001 -30.52269 -29.99884 -29.53352 -27.97268 -27.47716 -25.55560 -24.19938 -23.67055 -21.93272 -20.35865 -19.96658 -18.97143 -18.94577 -18.83049 -17.38893 -16.70406 -16.34798 -16.13018 -16.01893 -15.56424 -15.34759 -15.23978 -14.97225 -14.55173 -14.35442 -14.18491 -14.14674 -14.13020 -13.93593 -13.70500 -13.34234 -12.94922 -12.92178 -12.83158 -12.82902 -12.59356 -12.28780 -12.19444 -12.14483 -11.76630 -11.51589 -11.48176 -11.16459 -10.89728 -10.69414 -10.67775 -10.39772 -10.35361 -9.77234 -9.64127 -8.21405 -6.21294 -0.45004 0.28884 0.69878 1.36896 1.39652 1.49766 1.54368 1.91407 2.15604 2.40077 3.08758 3.14058 3.35894 3.62605 3.94370 3.96544 4.02298 4.08908 4.18124 4.50125 4.54742 4.55828 4.65232 4.65424 4.70241 4.74549 4.77440 4.80548 4.94786 4.97189 5.04024 5.10456 5.11083 5.30434 5.31604 5.35389 5.38171 5.42495 5.51741 5.58566 5.71213 5.77430 5.96632 6.39267 6.70184 6.85499 7.06458 7.41300 7.56500 8.94075 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.027350 B = 0.002132 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.527221 B =13128.184087 C =13321.463796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.052 3.948 3 N -0.505 5.505 4 C 0.087 3.913 5 C -0.083 4.083 6 C -0.268 4.268 7 C 0.228 3.772 8 N -0.731 5.731 9 C 0.704 3.296 10 O -0.634 6.634 11 N -0.725 5.725 12 C 0.159 3.841 13 C -0.057 4.057 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.004 4.004 17 C -0.500 4.500 18 H 0.052 0.948 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.251 1.251 25 S 0.158 5.842 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.408 0.592 35 H 0.408 0.592 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.524 7.297 -18.690 32.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.225 4.225 3 N -0.221 5.221 4 C -0.047 4.047 5 C -0.142 4.142 6 C -0.389 4.389 7 C 0.102 3.898 8 N -0.388 5.388 9 C 0.403 3.597 10 O -0.516 6.516 11 N -0.381 5.381 12 C 0.034 3.966 13 C -0.057 4.057 14 C -0.180 4.180 15 C -0.180 4.180 16 C -0.042 4.042 17 C -0.539 4.539 18 H 0.070 0.930 19 C -0.193 4.193 20 N -0.593 5.593 21 Si 0.760 3.240 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.175 1.175 25 S 0.415 5.585 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.244 0.756 35 H 0.246 0.754 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.033 0.967 45 H 0.032 0.968 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.227 6.414 -19.423 32.477 hybrid contribution 1.235 0.525 0.708 1.517 sum -23.992 6.939 -18.715 31.209 Atomic orbital electron populations 1.20670 0.82773 1.05460 1.05245 1.27689 1.03268 0.91058 1.00525 1.66282 1.04735 1.32714 1.18379 1.20523 0.90486 0.94598 0.99103 1.20470 0.95697 0.94241 1.03793 1.25527 0.99618 0.96153 1.17579 1.19178 0.86877 1.01146 0.82592 1.45018 1.12878 1.71939 1.08944 1.16012 0.82099 0.78194 0.83371 1.90903 1.56554 1.59448 1.44669 1.45036 1.16127 1.71195 1.05787 1.21129 0.81838 0.98536 0.95106 1.20550 0.96351 0.96747 0.92096 1.21698 1.00803 0.94863 1.00682 1.21694 0.97509 0.98146 1.00678 1.19572 0.93480 0.95913 0.95223 1.21370 0.98663 1.42075 0.91743 0.92960 1.25849 1.01262 0.95894 0.96252 1.70044 1.25352 1.50257 1.13627 0.85891 0.79556 0.78419 0.80179 1.19728 1.21554 1.17493 1.84018 0.96109 1.10972 1.67364 0.88003 0.88012 0.88925 0.89583 0.90278 0.90187 0.89692 0.91017 0.75616 0.75441 0.92919 0.92771 0.91388 0.93671 0.93629 0.93692 0.93651 0.91387 0.96655 0.96777 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 71.24 0.75 0.21 16 2 C 0.05 0.71 7.39 88.52 0.65 1.37 16 3 N -0.50 -9.26 10.53 -179.41 -1.89 -11.15 16 4 C 0.09 1.50 6.74 41.52 0.28 1.78 16 5 C -0.08 -1.18 9.82 71.24 0.70 -0.48 16 6 C -0.27 -4.32 5.96 24.64 0.15 -4.17 16 7 C 0.23 4.14 5.60 85.63 0.48 4.62 16 8 N -0.73 -13.90 5.55 -482.28 -2.68 -16.58 16 9 C 0.70 18.91 8.57 179.06 1.53 20.45 16 10 O -0.63 -22.70 16.34 -3.98 -0.07 -22.77 16 11 N -0.73 -18.20 4.96 -478.55 -2.37 -20.58 16 12 C 0.16 5.02 4.56 86.38 0.39 5.41 16 13 C -0.06 -1.99 0.54 -52.18 -0.03 -2.02 16 14 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 15 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 16 C 0.00 -0.18 3.11 29.85 0.09 -0.08 16 17 C -0.50 -27.05 8.20 25.60 0.21 -26.84 16 18 H 0.05 3.04 5.92 -2.91 -0.02 3.02 16 19 C 0.00 0.20 5.47 84.66 0.46 0.67 16 20 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 21 Si 0.93 44.44 27.47 68.60 1.88 46.32 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 25 S 0.16 2.08 23.18 -56.49 -1.31 0.77 16 26 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.11 7.35 -2.39 -0.02 1.09 16 32 H 0.09 1.60 7.43 -2.39 -0.02 1.58 16 33 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.41 5.93 8.48 -92.71 -0.79 5.14 16 35 H 0.41 8.07 6.18 -92.70 -0.57 7.50 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 39 H 0.04 1.73 6.62 -2.39 -0.02 1.71 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.04 1.74 6.62 -2.38 -0.02 1.72 16 43 H 0.07 1.70 6.86 -2.38 -0.02 1.68 16 44 H 0.02 0.69 7.20 -2.39 -0.02 0.67 16 45 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 46 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -71.83 382.07 0.28 -71.54 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.41 Total: 16.74 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 6.83 Total: -6.00 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -6.64 Total: -106.61 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.07 Total: -22.77 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.31 Total: 0.77 kcal Total: -71.83 0.28 -71.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353638376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.120 kcal (2) G-P(sol) polarization free energy of solvation -71.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds