Wall clock time and date at job start Sat Apr 11 2020 01:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09008 * 109.46712 * 164.95986 * 6 5 4 8 8 C 1.52993 * 109.47437 * 284.96202 * 6 5 4 9 9 N 1.46502 * 109.47009 * 44.96541 * 6 5 4 10 10 C 1.34770 * 119.99772 * 154.99777 * 9 6 5 11 11 O 1.21582 * 120.00689 * 359.97438 * 10 9 6 12 12 N 1.34784 * 119.99890 * 179.97438 * 10 9 6 13 13 C 1.46505 * 120.00291 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47112 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47358 * 299.99940 * 14 13 12 16 16 C 1.53004 * 109.47220 * 60.00243 * 14 13 12 17 17 C 1.52999 * 109.47032 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47311 * 179.97438 * 17 14 13 19 19 H 1.07999 * 119.99517 * 0.02562 * 18 17 14 20 20 C 1.37876 * 119.99975 * 179.97438 * 18 17 14 21 21 N 1.31517 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47201 * 90.00509 * 22 20 18 24 24 H 1.48500 * 109.47533 * 210.00460 * 22 20 18 25 25 H 1.48499 * 109.47280 * 330.00620 * 22 20 18 26 26 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 27 27 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 30 30 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47336 * 180.02562 * 8 6 5 32 32 H 1.09005 * 109.47205 * 299.99946 * 8 6 5 33 33 H 1.08995 * 109.47518 * 60.00294 * 8 6 5 34 34 H 0.96998 * 120.00221 * 334.99139 * 9 6 5 35 35 H 0.97004 * 119.99638 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.46530 * 299.99893 * 13 12 10 37 37 H 1.09000 * 109.46711 * 59.99344 * 13 12 10 38 38 H 1.08999 * 109.47682 * 59.99855 * 15 14 13 39 39 H 1.08999 * 109.47374 * 180.02562 * 15 14 13 40 40 H 1.09005 * 109.47117 * 299.99937 * 15 14 13 41 41 H 1.08997 * 109.47413 * 59.99204 * 16 14 13 42 42 H 1.08997 * 109.47170 * 180.02562 * 16 14 13 43 43 H 1.09010 * 109.46479 * 299.99797 * 16 14 13 44 44 H 1.09000 * 109.47212 * 300.00342 * 17 14 13 45 45 H 1.09005 * 109.47115 * 60.00264 * 17 14 13 46 46 H 0.97004 * 119.99532 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3674 -1.9829 0.2566 8 6 5.9585 -0.7343 -1.3964 9 7 6.1369 -0.1694 0.9764 10 6 7.2405 -0.7170 1.5228 11 8 7.5855 -1.8379 1.2023 12 7 7.9618 -0.0220 2.4247 13 6 9.1618 -0.6170 3.0183 14 6 9.7890 0.3732 4.0015 15 6 10.1694 1.6563 3.2602 16 6 8.7828 0.7016 5.1063 17 6 11.0419 -0.2485 4.6219 18 6 11.6601 0.7271 5.5899 19 1 11.2047 1.6937 5.7472 20 6 12.8065 0.3853 6.2754 21 7 13.3607 -0.7920 6.0842 22 14 13.5732 1.5948 7.4748 23 1 12.9987 1.3822 8.8275 24 1 15.0421 1.3816 7.5218 25 1 13.2885 2.9823 7.0286 26 16 2.5436 -1.4248 -0.0077 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5091 30 1 1.9025 2.0874 -0.0004 31 1 6.9869 -1.0954 -1.3979 32 1 5.3754 -1.2962 -2.1261 33 1 5.9444 0.3239 -1.6573 34 1 5.8616 0.7248 1.2324 35 1 7.6868 0.8724 2.6802 36 1 8.8908 -1.5314 3.5461 37 1 9.8787 -0.8507 2.2312 38 1 9.2767 2.0991 2.8185 39 1 10.6167 2.3616 3.9606 40 1 10.8864 1.4223 2.4731 41 1 8.5117 -0.2125 5.6344 42 1 9.2295 1.4075 5.8065 43 1 7.8900 1.1444 4.6646 44 1 10.7705 -1.1625 5.1501 45 1 11.7589 -0.4828 3.8351 46 1 14.1675 -1.0323 6.5663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354145011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:29:02 Heat of formation + Delta-G solvation = -8.063283 kcal Electronic energy + Delta-G solvation = -24930.027513 eV Core-core repulsion = 21366.891662 eV Total energy + Delta-G solvation = -3563.135851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42972 -39.67004 -37.35831 -35.65872 -33.59270 -32.85263 -32.09701 -30.55522 -27.42904 -27.06699 -26.47466 -26.01488 -24.96910 -23.23435 -22.45642 -20.78537 -19.45658 -19.08567 -18.26379 -17.52655 -16.43848 -16.10441 -15.52597 -15.44453 -15.08812 -14.69797 -14.37819 -14.32022 -13.89343 -13.73103 -13.54642 -13.44910 -13.14078 -13.02357 -12.79274 -12.70061 -12.26978 -12.10423 -12.03853 -11.64913 -11.56717 -11.12064 -10.99062 -10.83469 -10.60893 -10.36775 -10.22812 -10.12686 -9.99929 -9.84345 -9.60972 -9.29239 -9.17751 -9.11598 -8.90162 -8.54706 -8.33804 -5.97899 -3.98973 0.25873 0.87425 1.32853 2.40303 2.92263 3.32298 3.37910 3.39288 3.41225 3.68220 4.42942 4.46619 4.49609 4.53954 4.68051 4.96603 4.99421 5.02113 5.26672 5.37581 5.37724 5.44939 5.53404 5.66228 5.67888 5.77189 5.79083 6.02504 6.22003 6.25761 6.30826 6.40989 6.45035 6.63157 6.66476 6.83300 7.06888 7.10187 7.10973 7.18533 7.33611 7.66893 7.79482 8.00990 8.19632 8.42995 8.78429 9.05803 9.63898 11.13500 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.027808 B = 0.002107 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.645786 B =13284.381964 C =13689.453805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.226 4.226 3 C 0.033 3.967 4 N -0.461 5.461 5 C 0.033 3.967 6 C 0.245 3.755 7 H 0.106 0.894 8 C -0.156 4.156 9 N -0.740 5.740 10 C 0.703 3.297 11 O -0.594 6.594 12 N -0.735 5.735 13 C 0.147 3.853 14 C -0.072 4.072 15 C -0.127 4.127 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.510 4.510 19 H 0.059 0.941 20 C 0.055 3.945 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 S 0.143 5.857 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.176 0.824 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.402 0.598 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.023 2.326 -14.379 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.347 4.347 3 C -0.118 4.118 4 N -0.175 5.175 5 C -0.245 4.245 6 C 0.136 3.864 7 H 0.124 0.876 8 C -0.216 4.216 9 N -0.397 5.397 10 C 0.403 3.597 11 O -0.472 6.472 12 N -0.390 5.390 13 C 0.024 3.976 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.001 4.001 18 C -0.548 4.548 19 H 0.077 0.923 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.200 1.200 26 S 0.398 5.602 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.193 0.807 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.237 0.763 35 H 0.229 0.771 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.255 0.487 -14.596 29.174 hybrid contribution -0.108 2.384 0.969 2.575 sum -25.363 2.870 -13.627 28.935 Atomic orbital electron populations 1.20246 0.86622 1.03504 1.03119 1.26087 1.01820 0.95243 1.11581 1.21715 0.86776 1.00162 1.03130 1.66162 1.17864 1.18445 1.15052 1.27139 1.00852 0.91926 1.04602 1.19134 0.80931 0.96282 0.90064 0.87603 1.22192 1.02243 1.02965 0.94243 1.45057 1.27917 1.20243 1.46507 1.15957 0.79836 0.84483 0.79470 1.90911 1.71524 1.18704 1.66084 1.45367 1.29218 1.19637 1.44744 1.21501 0.84018 0.96343 0.95752 1.20912 0.97844 0.94743 0.93783 1.21754 0.99054 0.97662 0.99913 1.21756 0.96555 1.01474 0.98579 1.19090 0.89744 0.95877 0.95420 1.21183 1.09204 1.01262 1.23197 0.92276 1.25020 0.97219 0.95203 0.97144 1.69969 1.20728 1.20275 1.42385 0.86644 0.78472 0.81561 0.81592 1.20811 1.21366 1.19971 1.84083 0.97833 1.10706 1.67567 0.90369 0.91004 0.90127 0.80726 0.90423 0.91624 0.91603 0.76338 0.77073 0.91980 0.91940 0.95266 0.91502 0.93349 0.93378 0.91506 0.95317 0.96315 0.96288 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.42 36.01 0.38 0.06 16 2 C -0.23 -1.63 6.60 -35.92 -0.24 -1.87 16 3 C 0.03 0.27 11.25 -19.18 -0.22 0.06 16 4 N -0.46 -4.72 10.16 -11.86 -0.12 -4.84 16 5 C 0.03 0.33 6.21 -13.45 -0.08 0.24 16 6 C 0.25 2.70 3.07 -69.08 -0.21 2.49 16 7 H 0.11 1.24 7.58 -51.92 -0.39 0.85 16 8 C -0.16 -1.58 9.47 37.15 0.35 -1.23 16 9 N -0.74 -9.04 5.07 -59.81 -0.30 -9.34 16 10 C 0.70 10.98 8.53 -86.92 -0.74 10.24 16 11 O -0.59 -11.42 16.01 5.29 0.08 -11.33 16 12 N -0.73 -11.08 4.96 -65.23 -0.32 -11.41 16 13 C 0.15 2.66 4.56 -4.04 -0.02 2.64 16 14 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 15 C -0.13 -2.25 8.05 37.15 0.30 -1.95 16 16 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 18 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 19 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 20 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 21 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 22 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 S 0.14 1.15 23.18 -107.50 -2.49 -1.34 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.40 4.39 8.30 -40.82 -0.34 4.05 16 35 H 0.39 5.12 6.18 -40.82 -0.25 4.87 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 39 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 43 H 0.03 0.42 6.86 -51.92 -0.36 0.06 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -31.90 386.18 -9.67 -41.57 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.31 Total: 4.73 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.74 Total: -4.38 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.01 Total: -51.36 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.49 Total: -1.34 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.90 -9.67 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354145011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.512 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds