Wall clock time and date at job start Sat Apr 11 2020 01:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09008 * 109.46712 * 164.95986 * 6 5 4 8 8 C 1.52993 * 109.47437 * 284.96202 * 6 5 4 9 9 N 1.46502 * 109.47009 * 44.96541 * 6 5 4 10 10 C 1.34770 * 119.99772 * 154.99777 * 9 6 5 11 11 O 1.21582 * 120.00689 * 359.97438 * 10 9 6 12 12 N 1.34784 * 119.99890 * 179.97438 * 10 9 6 13 13 C 1.46505 * 120.00291 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47112 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47358 * 299.99940 * 14 13 12 16 16 C 1.53004 * 109.47220 * 60.00243 * 14 13 12 17 17 C 1.52999 * 109.47032 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47311 * 179.97438 * 17 14 13 19 19 H 1.07999 * 119.99517 * 0.02562 * 18 17 14 20 20 C 1.37876 * 119.99975 * 179.97438 * 18 17 14 21 21 N 1.31517 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47201 * 90.00509 * 22 20 18 24 24 H 1.48500 * 109.47533 * 210.00460 * 22 20 18 25 25 H 1.48499 * 109.47280 * 330.00620 * 22 20 18 26 26 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 27 27 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 30 30 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47336 * 180.02562 * 8 6 5 32 32 H 1.09005 * 109.47205 * 299.99946 * 8 6 5 33 33 H 1.08995 * 109.47518 * 60.00294 * 8 6 5 34 34 H 0.96998 * 120.00221 * 334.99139 * 9 6 5 35 35 H 0.97004 * 119.99638 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.46530 * 299.99893 * 13 12 10 37 37 H 1.09000 * 109.46711 * 59.99344 * 13 12 10 38 38 H 1.08999 * 109.47682 * 59.99855 * 15 14 13 39 39 H 1.08999 * 109.47374 * 180.02562 * 15 14 13 40 40 H 1.09005 * 109.47117 * 299.99937 * 15 14 13 41 41 H 1.08997 * 109.47413 * 59.99204 * 16 14 13 42 42 H 1.08997 * 109.47170 * 180.02562 * 16 14 13 43 43 H 1.09010 * 109.46479 * 299.99797 * 16 14 13 44 44 H 1.09000 * 109.47212 * 300.00342 * 17 14 13 45 45 H 1.09005 * 109.47115 * 60.00264 * 17 14 13 46 46 H 0.97004 * 119.99532 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3674 -1.9829 0.2566 8 6 5.9585 -0.7343 -1.3964 9 7 6.1369 -0.1694 0.9764 10 6 7.2405 -0.7170 1.5228 11 8 7.5855 -1.8379 1.2023 12 7 7.9618 -0.0220 2.4247 13 6 9.1618 -0.6170 3.0183 14 6 9.7890 0.3732 4.0015 15 6 10.1694 1.6563 3.2602 16 6 8.7828 0.7016 5.1063 17 6 11.0419 -0.2485 4.6219 18 6 11.6601 0.7271 5.5899 19 1 11.2047 1.6937 5.7472 20 6 12.8065 0.3853 6.2754 21 7 13.3607 -0.7920 6.0842 22 14 13.5732 1.5948 7.4748 23 1 12.9987 1.3822 8.8275 24 1 15.0421 1.3816 7.5218 25 1 13.2885 2.9823 7.0286 26 16 2.5436 -1.4248 -0.0077 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5091 30 1 1.9025 2.0874 -0.0004 31 1 6.9869 -1.0954 -1.3979 32 1 5.3754 -1.2962 -2.1261 33 1 5.9444 0.3239 -1.6573 34 1 5.8616 0.7248 1.2324 35 1 7.6868 0.8724 2.6802 36 1 8.8908 -1.5314 3.5461 37 1 9.8787 -0.8507 2.2312 38 1 9.2767 2.0991 2.8185 39 1 10.6167 2.3616 3.9606 40 1 10.8864 1.4223 2.4731 41 1 8.5117 -0.2125 5.6344 42 1 9.2295 1.4075 5.8065 43 1 7.8900 1.1444 4.6646 44 1 10.7705 -1.1625 5.1501 45 1 11.7589 -0.4828 3.8351 46 1 14.1675 -1.0323 6.5663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354145011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:29:02 Heat of formation + Delta-G solvation = -28.774543 kcal Electronic energy + Delta-G solvation = -24930.925621 eV Core-core repulsion = 21366.891662 eV Total energy + Delta-G solvation = -3564.033959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41149 -40.62595 -38.85741 -36.71151 -35.23226 -34.05803 -33.35089 -31.54916 -29.03216 -28.04049 -27.94909 -27.45894 -25.63665 -24.90382 -23.51038 -21.98492 -20.32312 -20.22641 -19.41248 -18.61937 -18.34818 -17.29981 -16.64744 -16.56698 -16.26130 -15.85415 -15.63401 -15.49991 -15.21799 -14.76461 -14.60986 -14.33448 -14.30955 -13.98437 -13.92354 -13.78468 -13.57173 -13.42494 -13.06296 -12.86269 -12.71305 -12.58918 -12.46724 -12.32106 -12.21255 -12.09721 -11.96196 -11.52087 -11.44753 -10.97908 -10.84773 -10.76285 -10.49695 -10.39538 -10.22551 -9.85372 -9.73599 -8.12390 -6.19944 -0.38033 0.24750 0.71264 1.43356 1.43853 1.54164 1.64597 1.88481 2.13319 2.45471 2.95373 3.21878 3.32233 3.79257 3.99418 4.02300 4.10386 4.13362 4.24159 4.24940 4.27447 4.62723 4.70451 4.73496 4.75782 4.77301 4.83261 4.89974 4.98351 5.03835 5.12209 5.13781 5.16785 5.28526 5.39577 5.41333 5.50143 5.51742 5.55252 5.60442 5.82301 5.91474 5.96210 6.32843 6.68852 6.94772 7.06033 7.47403 7.55109 9.00016 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.027808 B = 0.002107 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.645786 B =13284.381964 C =13689.453805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.213 4.213 3 C 0.013 3.987 4 N -0.474 5.474 5 C 0.010 3.990 6 C 0.244 3.756 7 H 0.095 0.905 8 C -0.149 4.149 9 N -0.724 5.724 10 C 0.703 3.297 11 O -0.632 6.632 12 N -0.724 5.724 13 C 0.162 3.838 14 C -0.064 4.064 15 C -0.121 4.121 16 C -0.121 4.121 17 C 0.040 3.960 18 C -0.512 4.512 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.260 1.260 26 S 0.155 5.845 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.196 0.804 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.411 0.589 35 H 0.408 0.592 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.056 0.944 43 H 0.067 0.933 44 H -0.013 1.013 45 H -0.013 1.013 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.820 4.616 -14.624 32.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.335 4.335 3 C -0.137 4.137 4 N -0.189 5.189 5 C -0.267 4.267 6 C 0.135 3.865 7 H 0.113 0.887 8 C -0.209 4.209 9 N -0.381 5.381 10 C 0.403 3.597 11 O -0.514 6.514 12 N -0.380 5.380 13 C 0.037 3.963 14 C -0.064 4.064 15 C -0.178 4.178 16 C -0.178 4.178 17 C 0.003 3.997 18 C -0.550 4.550 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.785 3.215 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.184 1.184 26 S 0.410 5.590 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.213 0.787 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.247 0.753 35 H 0.246 0.754 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.005 0.995 45 H 0.006 0.994 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -28.098 2.831 -14.853 31.908 hybrid contribution 0.629 1.629 0.986 2.006 sum -27.469 4.460 -13.867 31.092 Atomic orbital electron populations 1.20410 0.84371 1.04800 1.04082 1.26528 1.03195 0.94364 1.09392 1.22074 0.86247 1.01454 1.03913 1.66140 1.19161 1.18627 1.14989 1.26822 1.00642 0.92520 1.06744 1.19150 0.81843 0.95611 0.89914 0.88690 1.22111 1.01317 1.03161 0.94322 1.44925 1.26689 1.20513 1.45964 1.16035 0.80380 0.83962 0.79341 1.90891 1.72641 1.20544 1.67288 1.45035 1.28240 1.20083 1.44605 1.21076 0.84752 0.95565 0.94864 1.20705 0.95889 0.95293 0.94527 1.21686 1.00513 0.96397 0.99231 1.21687 0.97384 1.00966 0.97775 1.18968 0.91671 0.94856 0.94253 1.21586 1.08953 1.01796 1.22703 0.90968 1.25961 0.98134 0.96967 0.99311 1.70128 1.21362 1.22476 1.43920 0.85530 0.77126 0.79693 0.79185 1.20191 1.21607 1.18397 1.84044 0.97131 1.10808 1.67036 0.89408 0.90147 0.88396 0.78728 0.92324 0.89808 0.91509 0.75262 0.75424 0.93685 0.93634 0.91401 0.92585 0.94358 0.94398 0.92535 0.91466 0.99478 0.99445 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.42 71.24 0.74 0.34 16 2 C -0.21 -2.54 6.60 24.64 0.16 -2.38 16 3 C 0.01 0.19 11.25 83.66 0.94 1.13 16 4 N -0.47 -8.87 10.16 -191.44 -1.94 -10.82 16 5 C 0.01 0.18 6.21 88.52 0.55 0.73 16 6 C 0.24 5.23 3.07 44.24 0.14 5.37 16 7 H 0.10 2.25 7.58 -2.38 -0.02 2.23 16 8 C -0.15 -2.94 9.47 71.98 0.68 -2.26 16 9 N -0.72 -17.00 5.07 -461.41 -2.34 -19.34 16 10 C 0.70 21.69 8.53 179.05 1.53 23.21 16 11 O -0.63 -24.77 16.01 -3.98 -0.06 -24.84 16 12 N -0.72 -21.03 4.96 -478.54 -2.37 -23.41 16 13 C 0.16 5.94 4.56 86.38 0.39 6.34 16 14 C -0.06 -2.44 0.54 -52.18 -0.03 -2.46 16 15 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 16 C -0.12 -4.13 8.05 71.98 0.58 -3.55 16 17 C 0.04 2.06 4.04 29.85 0.12 2.18 16 18 C -0.51 -27.60 7.65 25.60 0.20 -27.40 16 19 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 20 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 21 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 22 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 25 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 26 S 0.16 2.25 23.18 -56.49 -1.31 0.94 16 27 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.41 8.24 8.30 -92.71 -0.77 7.47 16 35 H 0.41 9.49 6.18 -92.71 -0.57 8.92 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.79 6.86 -2.39 -0.02 1.77 16 39 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 40 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 43 H 0.07 1.77 6.86 -2.38 -0.02 1.75 16 44 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 45 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 46 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -71.08 386.18 0.97 -70.11 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.35 Total: 20.73 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 7.04 Total: -2.24 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -6.38 Total: -110.60 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.06 Total: -24.84 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.31 Total: 0.94 kcal Total: -71.08 0.97 -70.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354145011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.333 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds