Wall clock time and date at job start Sat Apr 11 2020 01:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 N 1.46501 * 109.47143 * 90.00205 * 7 6 2 9 9 C 1.46503 * 119.99929 * 269.99887 * 8 7 6 10 10 C 1.34776 * 120.00395 * 89.99522 * 8 7 6 11 11 O 1.21587 * 119.99809 * 0.02562 * 10 8 7 12 12 N 1.34773 * 120.00112 * 179.97438 * 10 8 7 13 13 C 1.46499 * 120.00036 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47211 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47465 * 300.00584 * 14 13 12 16 16 C 1.53003 * 109.46928 * 60.00965 * 14 13 12 17 17 C 1.52998 * 109.47243 * 180.02562 * 14 13 12 18 18 C 1.50703 * 109.47225 * 180.02562 * 17 14 13 19 19 H 1.07990 * 120.00050 * 0.02562 * 18 17 14 20 20 C 1.37879 * 119.99964 * 180.02562 * 18 17 14 21 21 N 1.31523 * 120.00016 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00182 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47073 * 90.00245 * 22 20 18 24 24 H 1.48492 * 109.47401 * 210.00383 * 22 20 18 25 25 H 1.48503 * 109.46844 * 330.00428 * 22 20 18 26 26 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 27 27 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 28 28 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 29 29 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 31 31 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 32 32 H 1.09000 * 109.47401 * 89.99712 * 9 8 7 33 33 H 1.08992 * 109.47476 * 210.00105 * 9 8 7 34 34 H 1.08999 * 109.46811 * 330.00212 * 9 8 7 35 35 H 0.97003 * 119.99948 * 0.02562 * 12 10 8 36 36 H 1.08991 * 109.47449 * 300.00743 * 13 12 10 37 37 H 1.09006 * 109.46916 * 60.00670 * 13 12 10 38 38 H 1.09003 * 109.47042 * 59.99828 * 15 14 13 39 39 H 1.09002 * 109.47044 * 179.97438 * 15 14 13 40 40 H 1.08994 * 109.47012 * 300.00008 * 15 14 13 41 41 H 1.09001 * 109.47405 * 59.99451 * 16 14 13 42 42 H 1.08993 * 109.47266 * 179.97438 * 16 14 13 43 43 H 1.09003 * 109.46808 * 299.99700 * 16 14 13 44 44 H 1.08995 * 109.47794 * 300.00947 * 17 14 13 45 45 H 1.09006 * 109.46967 * 60.00599 * 17 14 13 46 46 H 0.96991 * 119.99835 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 7 1.5132 -2.9880 -1.3728 9 6 0.2446 -2.7585 -2.0688 10 6 2.5223 -3.6214 -2.0027 11 8 3.5750 -3.8122 -1.4250 12 7 2.3642 -4.0443 -3.2726 13 6 3.4614 -4.7323 -3.9575 14 6 3.0245 -5.1027 -5.3762 15 6 1.8060 -6.0256 -5.3101 16 6 2.6604 -3.8315 -6.1459 17 6 4.1701 -5.8219 -6.0912 18 6 3.7400 -6.1862 -7.4889 19 1 2.7489 -5.9300 -7.8328 20 6 4.6118 -6.8465 -8.3284 21 7 5.8187 -7.1589 -7.9093 22 14 4.0790 -7.2974 -10.0610 23 1 4.4184 -6.1879 -10.9878 24 1 4.7824 -8.5330 -10.4895 25 1 2.6124 -7.5298 -10.0831 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3633 0.8902 0.5135 29 1 4.2059 1.8027 0.0057 30 1 2.3811 -3.1881 0.5260 31 1 0.7217 -2.5441 0.5181 32 1 0.2817 -1.7993 -2.5851 33 1 0.0786 -3.5553 -2.7937 34 1 -0.5705 -2.7502 -1.3451 35 1 1.5242 -3.8924 -3.7333 36 1 4.3293 -4.0748 -4.0050 37 1 3.7211 -5.6378 -3.4089 38 1 0.9896 -5.5136 -4.8005 39 1 1.4945 -6.2891 -6.3208 40 1 2.0654 -6.9311 -4.7617 41 1 3.5286 -3.1741 -6.1930 42 1 2.3496 -4.0953 -7.1567 43 1 1.8441 -3.3195 -5.6363 44 1 5.0385 -5.1649 -6.1383 45 1 4.4291 -6.7276 -5.5428 46 1 6.4319 -7.6238 -8.4998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358718018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:29:09 Heat of formation + Delta-G solvation = -13.193648 kcal Electronic energy + Delta-G solvation = -25743.302672 eV Core-core repulsion = 22179.944351 eV Total energy + Delta-G solvation = -3563.358321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44469 -40.69201 -38.84806 -36.73820 -35.30698 -34.07196 -32.98896 -30.37736 -29.08208 -27.96474 -27.84263 -27.35533 -26.26244 -25.22445 -24.35220 -21.21347 -20.34819 -19.61052 -19.14780 -18.65867 -18.34391 -17.47404 -17.12052 -16.51234 -16.23297 -15.91283 -15.46021 -15.33481 -15.12266 -14.58960 -14.47340 -14.40312 -14.36207 -13.94666 -13.80636 -13.74591 -13.67645 -13.35210 -13.05860 -12.86664 -12.76551 -12.71296 -12.58459 -12.33679 -12.21792 -11.96420 -11.93593 -11.53525 -11.35894 -10.98806 -10.85317 -10.63686 -10.50539 -10.29927 -10.19549 -9.74037 -9.54893 -8.13133 -6.20973 -0.30495 0.46934 0.89071 1.43206 1.43576 1.53840 1.58856 1.93239 2.15018 2.44943 3.04924 3.21417 3.34197 3.90814 3.96234 4.01640 4.09747 4.22260 4.26840 4.28443 4.36372 4.59989 4.67207 4.69457 4.73763 4.77675 4.83269 4.88886 4.92478 4.96434 5.00684 5.11108 5.12609 5.38897 5.41216 5.47240 5.49710 5.50731 5.54558 5.60034 5.81101 5.87603 5.90915 6.31529 6.73108 6.93424 6.97866 7.46778 7.56373 8.99511 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.023144 B = 0.002562 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.526512 B =10926.014790 C =11271.503778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.065 3.935 3 N -0.498 5.498 4 C 0.015 3.985 5 S 0.118 5.882 6 C -0.251 4.251 7 C 0.212 3.788 8 N -0.624 5.624 9 C 0.070 3.930 10 C 0.695 3.305 11 O -0.628 6.628 12 N -0.724 5.724 13 C 0.162 3.838 14 C -0.064 4.064 15 C -0.119 4.119 16 C -0.119 4.119 17 C 0.041 3.959 18 C -0.512 4.512 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.958 3.042 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.258 1.258 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.223 0.777 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.408 0.592 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.066 0.934 44 H -0.016 1.016 45 H -0.014 1.014 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.978 14.353 17.021 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 N -0.213 5.213 4 C -0.282 4.282 5 S 0.373 5.627 6 C -0.373 4.373 7 C 0.087 3.913 8 N -0.360 5.360 9 C -0.072 4.072 10 C 0.396 3.604 11 O -0.509 6.509 12 N -0.382 5.382 13 C 0.037 3.963 14 C -0.064 4.064 15 C -0.176 4.176 16 C -0.177 4.177 17 C 0.003 3.997 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.182 1.182 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.239 0.761 30 H 0.095 0.905 31 H 0.156 0.844 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.247 0.753 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.002 0.998 45 H 0.005 0.995 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.332 14.147 17.368 26.593 hybrid contribution -0.125 -0.262 -1.256 1.289 sum -14.457 13.885 16.112 25.717 Atomic orbital electron populations 1.20532 0.84800 1.04430 1.03870 1.20749 0.99652 0.85634 1.00866 1.66299 1.05726 1.32355 1.16884 1.28827 0.95536 1.01070 1.02736 1.84792 1.08581 1.03006 1.66335 1.26309 0.94791 1.01837 1.14382 1.19690 1.02962 0.86692 0.81960 1.47102 1.14253 1.60034 1.14616 1.22093 0.84490 1.01790 0.98862 1.16181 0.83760 0.78684 0.81788 1.90888 1.28495 1.64289 1.67248 1.45185 1.18454 1.62179 1.12412 1.21028 0.88262 0.94927 0.92037 1.20705 0.97223 0.96620 0.91868 1.21669 0.96009 0.98135 1.01809 1.21671 1.00175 0.95424 1.00393 1.18960 0.92557 0.93472 0.94707 1.21590 0.99843 1.35486 0.98127 0.90835 1.25956 0.95043 0.96389 1.02857 1.70127 1.07694 1.42370 1.37849 0.85543 0.78918 0.77375 0.79797 1.20241 1.21627 1.18197 0.89643 0.88338 0.90620 0.76113 0.90505 0.84424 0.92300 0.90611 0.87162 0.75300 0.94278 0.93808 0.91299 0.92501 0.94379 0.94744 0.92402 0.91486 0.99757 0.99513 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.06 71.24 0.72 -0.11 16 2 C 0.06 1.22 6.74 41.52 0.28 1.50 16 3 N -0.50 -10.94 10.53 -191.55 -2.02 -12.96 16 4 C 0.02 0.30 12.23 130.65 1.60 1.90 16 5 S 0.12 2.70 23.22 -56.49 -1.31 1.39 16 6 C -0.25 -5.07 6.17 24.64 0.15 -4.92 16 7 C 0.21 3.72 5.66 85.63 0.49 4.20 16 8 N -0.62 -12.30 2.86 -869.32 -2.48 -14.78 16 9 C 0.07 0.75 10.25 127.77 1.31 2.06 16 10 C 0.69 20.44 8.28 179.06 1.48 21.93 16 11 O -0.63 -23.97 15.92 -3.99 -0.06 -24.03 16 12 N -0.72 -20.32 4.82 -478.55 -2.31 -22.63 16 13 C 0.16 5.90 4.56 86.38 0.39 6.29 16 14 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 15 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 16 C -0.12 -4.00 8.05 71.98 0.58 -3.43 16 17 C 0.04 2.07 4.04 29.85 0.12 2.19 16 18 C -0.51 -27.31 7.65 25.60 0.20 -27.11 16 19 H 0.07 3.64 5.68 -2.92 -0.02 3.63 16 20 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 21 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 22 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.10 0.53 6.71 -2.38 -0.02 0.51 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.22 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.08 1.69 7.42 -2.39 -0.02 1.67 16 31 H 0.14 1.23 6.50 -2.39 -0.02 1.21 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.76 6.36 -2.39 -0.02 0.74 16 34 H 0.11 0.45 7.89 -2.39 -0.02 0.43 16 35 H 0.41 8.90 3.89 -92.71 -0.36 8.54 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.07 1.67 6.86 -2.39 -0.02 1.66 16 39 H 0.06 1.99 6.62 -2.39 -0.02 1.98 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 43 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 44 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 46 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -75.56 380.30 3.08 -72.48 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.63 Total: 13.16 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 8.33 Total: -1.10 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -6.52 Total: -107.31 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.31 Total: 1.39 kcal Total: -75.56 3.08 -72.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358718018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.284 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds