Wall clock time and date at job start Sat Apr 11 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31783 * 122.74864 * 2 1 4 4 C 1.29025 * 117.12786 * 180.02562 * 3 2 1 5 5 C 1.50699 * 124.91817 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47078 * 299.99940 * 5 4 3 7 7 C 1.53006 * 109.46866 * 59.99762 * 5 4 3 8 8 N 1.46500 * 109.46939 * 179.97438 * 5 4 3 9 9 C 1.34778 * 119.99620 * 179.97438 * 8 5 4 10 10 O 1.21277 * 120.00059 * 0.02562 * 9 8 5 11 11 C 1.50701 * 119.99951 * 180.02562 * 9 8 5 12 12 H 1.09004 * 109.46859 * 320.00459 * 11 9 8 13 13 N 1.46898 * 109.47326 * 200.00108 * 11 9 8 14 14 C 1.52997 * 109.47047 * 79.99956 * 11 9 8 15 15 C 1.53001 * 109.47040 * 185.00094 * 14 11 9 16 16 C 1.50703 * 109.47007 * 179.97438 * 15 14 11 17 17 H 1.08000 * 120.00343 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99957 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99590 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47135 * 90.00047 * 20 18 16 22 22 H 1.48507 * 109.46717 * 209.99976 * 20 18 16 23 23 H 1.48500 * 109.47113 * 329.99820 * 20 18 16 24 24 S 1.70978 * 110.16348 * 0.22339 * 4 3 2 25 25 C 1.33642 * 122.75287 * 180.02562 * 2 1 3 26 26 C 1.50696 * 126.03676 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.47001 * 89.98199 * 1 2 3 28 28 H 1.09009 * 109.46857 * 209.97586 * 1 2 3 29 29 H 1.08989 * 109.47621 * 329.97708 * 1 2 3 30 30 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 31 31 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 33 33 H 1.08993 * 109.46955 * 300.00219 * 7 5 4 34 34 H 1.09000 * 109.47050 * 60.00048 * 7 5 4 35 35 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 36 36 H 0.96994 * 119.99907 * 0.02562 * 8 5 4 37 37 H 1.00901 * 111.00005 * 300.00031 * 13 11 9 38 38 H 1.00905 * 110.99728 * 63.95484 * 13 11 9 39 39 H 1.09003 * 109.47042 * 305.00151 * 14 11 9 40 40 H 1.08999 * 109.47112 * 65.00172 * 14 11 9 41 41 H 1.08995 * 109.47166 * 300.00263 * 15 14 11 42 42 H 1.08999 * 109.47104 * 60.00073 * 15 14 11 43 43 H 0.97007 * 119.99475 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.47145 * 90.00010 * 26 25 2 45 45 H 1.08997 * 109.47221 * 210.00155 * 26 25 2 46 46 H 1.09000 * 109.47145 * 330.00375 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 -0.0005 5 6 4.4834 2.1272 -0.0012 6 6 4.2663 2.9833 -1.2505 7 6 4.2672 2.9839 1.2480 8 7 5.8505 1.6006 -0.0010 9 6 6.8989 2.4476 -0.0020 10 8 6.7105 3.6456 -0.0026 11 6 8.3052 1.9059 -0.0025 12 1 8.3615 1.0410 0.6585 13 7 9.2302 2.9446 0.4702 14 6 8.6903 1.4880 -1.4230 15 6 10.0686 0.8241 -1.4033 16 6 10.4476 0.4119 -2.8024 17 1 9.7728 0.6039 -3.6235 18 6 11.6555 -0.2113 -3.0342 19 7 12.4770 -0.4455 -2.0343 20 14 12.1257 -0.7215 -4.7686 21 1 12.8544 0.3898 -5.4311 22 1 12.9986 -1.9216 -4.7120 23 1 10.8978 -1.0385 -5.5413 24 16 3.9333 -0.6730 -0.0073 25 6 2.2300 -1.1239 -0.0005 26 6 1.6848 -2.5288 -0.0006 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8903 0.5135 29 1 -0.3634 0.8897 0.5141 30 1 4.4203 2.3731 -2.1404 31 1 4.9744 3.8119 -1.2507 32 1 3.2491 3.3752 -1.2502 33 1 3.2501 3.3756 1.2483 34 1 4.4219 2.3740 2.1381 35 1 4.9760 3.8120 1.2478 36 1 6.0010 0.6424 -0.0009 37 1 9.1965 3.7575 -0.1265 38 1 9.0369 3.1916 1.4292 39 1 7.9528 0.7831 -1.8069 40 1 8.7201 2.3683 -2.0651 41 1 10.8060 1.5290 -1.0194 42 1 10.0387 -0.0562 -0.7611 43 1 13.3267 -0.8842 -2.1973 44 1 1.5530 -2.8674 -1.0283 45 1 2.3832 -3.1896 0.5129 46 1 0.7238 -2.5457 0.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424149037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:30:30 Heat of formation + Delta-G solvation = -35.687941 kcal Electronic energy + Delta-G solvation = -25538.438847 eV Core-core repulsion = 21974.105101 eV Total energy + Delta-G solvation = -3564.333746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.71474 -40.87705 -37.91574 -36.63184 -34.81254 -34.14129 -32.51938 -31.91721 -30.54364 -28.42395 -28.15426 -26.86860 -25.92796 -25.18888 -22.79356 -21.74032 -20.94271 -19.63428 -19.42117 -18.54586 -18.05637 -17.38605 -16.74862 -16.48435 -16.34717 -15.98681 -15.77937 -15.37774 -15.01118 -14.84447 -14.70786 -14.27301 -14.14626 -13.98000 -13.83897 -13.77534 -13.49127 -13.35751 -13.33038 -12.93532 -12.90412 -12.80699 -12.77990 -12.48164 -12.47336 -12.21737 -12.05613 -11.71705 -11.57270 -11.20991 -10.93982 -10.69465 -10.48738 -10.46560 -10.23975 -9.61620 -9.60668 -8.12893 -6.22760 -0.41783 0.16460 0.62598 1.41550 1.43202 1.44297 1.53966 1.68164 1.85227 2.45210 2.87992 3.20333 3.49042 3.66857 3.82399 3.86462 3.89340 3.99069 4.10407 4.10967 4.31130 4.54476 4.57462 4.62449 4.64202 4.66013 4.71936 4.78041 4.78491 4.84347 4.93700 4.97831 5.03466 5.11155 5.13755 5.25833 5.28826 5.39894 5.58630 5.85939 6.00235 6.07838 6.29422 6.31912 6.54706 6.65437 6.95932 7.01831 7.45223 8.98289 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.003079 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.026316 B = 9090.831512 C =10446.927329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.039 3.961 3 N -0.471 5.471 4 C 0.026 3.974 5 C 0.254 3.746 6 C -0.146 4.146 7 C -0.143 4.143 8 N -0.720 5.720 9 C 0.501 3.499 10 O -0.555 6.555 11 C 0.086 3.914 12 H 0.109 0.891 13 N -0.816 5.816 14 C -0.082 4.082 15 C 0.040 3.960 16 C -0.543 4.543 17 H 0.055 0.945 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.264 1.264 24 S 0.122 5.878 25 C -0.218 4.218 26 C -0.077 4.077 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.347 0.653 38 H 0.348 0.652 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.007 0.993 42 H -0.006 1.006 43 H 0.262 0.738 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.909 -1.988 7.165 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 N -0.186 5.186 4 C -0.252 4.252 5 C 0.165 3.835 6 C -0.206 4.206 7 C -0.202 4.202 8 N -0.374 5.374 9 C 0.287 3.713 10 O -0.433 6.433 11 C -0.030 4.030 12 H 0.127 0.873 13 N -0.345 5.345 14 C -0.121 4.121 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.073 0.927 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.188 1.188 24 S 0.379 5.621 25 C -0.339 4.339 26 C -0.136 4.136 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.239 0.761 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.026 0.974 42 H 0.013 0.987 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.096 0.904 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.547 -1.757 7.071 25.605 hybrid contribution -0.896 -0.001 -0.694 1.133 sum -25.443 -1.759 6.377 26.289 Atomic orbital electron populations 1.20456 0.84816 1.04294 1.03723 1.20695 0.99597 0.85695 1.03277 1.65921 1.04102 1.32910 1.15638 1.26721 0.94592 0.97871 1.05991 1.18604 0.77921 0.88678 0.98332 1.22092 1.03428 1.00011 0.95033 1.22069 1.03468 0.99914 0.94758 1.46316 1.04931 1.10267 1.75906 1.22303 0.88314 0.86810 0.73896 1.90599 1.86338 1.16059 1.50317 1.21650 0.84960 0.96724 0.99694 0.87345 1.58965 1.52475 1.15317 1.07746 1.21396 0.98864 0.99503 0.92317 1.18821 0.91936 0.94225 0.94741 1.21733 1.02985 1.38152 0.95249 0.92679 1.25877 0.96590 0.96108 1.00948 1.70103 1.10380 1.43592 1.32859 0.85566 0.78373 0.77775 0.80030 1.20205 1.20751 1.18835 1.83989 1.08581 1.01319 1.68178 1.26226 0.93862 1.02564 1.11206 1.20439 1.02145 0.86843 1.04125 0.89871 0.88343 0.90938 0.92936 0.90745 0.90308 0.90411 0.92293 0.90626 0.76058 0.83881 0.83859 0.91827 0.93543 0.97414 0.98747 0.92945 0.89327 0.90358 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.06 71.24 0.72 -0.16 16 2 C 0.04 0.74 6.74 41.52 0.28 1.02 16 3 N -0.47 -11.11 10.51 -179.40 -1.89 -12.99 16 4 C 0.03 0.62 5.85 88.52 0.52 1.14 16 5 C 0.25 6.28 1.02 2.86 0.00 6.28 16 6 C -0.15 -3.79 8.38 71.98 0.60 -3.18 16 7 C -0.14 -3.40 8.38 71.98 0.60 -2.79 16 8 N -0.72 -18.36 5.08 -426.32 -2.16 -20.52 16 9 C 0.50 14.84 6.49 87.66 0.57 15.40 16 10 O -0.56 -18.30 12.46 -3.02 -0.04 -18.34 16 11 C 0.09 2.77 3.15 44.17 0.14 2.91 16 12 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 13 N -0.82 -26.52 8.44 -171.80 -1.45 -27.97 16 14 C -0.08 -3.27 4.78 30.59 0.15 -3.13 16 15 C 0.04 2.06 4.86 29.85 0.15 2.20 16 16 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 17 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 18 C 0.00 0.15 5.46 84.66 0.46 0.61 16 19 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 20 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 S 0.12 2.47 21.27 -56.49 -1.20 1.27 16 25 C -0.22 -3.73 6.59 24.64 0.16 -3.57 16 26 C -0.08 -0.74 10.10 71.23 0.72 -0.02 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 0.67 6.72 -2.38 -0.02 0.66 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 2.16 6.17 -2.39 -0.01 2.15 16 32 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 2.01 6.17 -2.39 -0.01 2.00 16 36 H 0.40 9.40 6.76 -92.71 -0.63 8.77 16 37 H 0.35 11.45 8.58 -89.69 -0.77 10.68 16 38 H 0.35 9.59 9.06 -89.69 -0.81 8.78 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.01 0.42 7.75 -2.39 -0.02 0.40 16 42 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 44 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.10 0.58 6.76 -2.39 -0.02 0.56 16 Total: -1.00 -68.82 384.59 -0.32 -69.14 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -1.19 Total: 32.94 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.30 Total: -13.74 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -5.22 Total: -117.62 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.04 Total: -18.34 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.20 Total: 1.27 kcal Total: -68.82 -0.32 -69.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424149037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.454 kcal (2) G-P(sol) polarization free energy of solvation -68.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds