Wall clock time and date at job start Sat Apr 11 2020 01:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31782 * 122.75225 * 2 1 4 4 C 1.29025 * 117.12882 * 180.02562 * 3 2 1 5 5 C 1.50698 * 124.92086 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47184 * 59.99423 * 5 4 3 7 7 C 1.52999 * 109.46824 * 300.00175 * 5 4 3 8 8 N 1.46492 * 109.47354 * 179.97438 * 5 4 3 9 9 C 1.34777 * 120.00147 * 179.97438 * 8 5 4 10 10 O 1.21280 * 120.00103 * 0.02562 * 9 8 5 11 11 C 1.50701 * 120.00115 * 179.97438 * 9 8 5 12 12 H 1.08996 * 109.46918 * 40.00338 * 11 9 8 13 13 N 1.46903 * 109.46769 * 160.00171 * 11 9 8 14 14 C 1.53003 * 109.47384 * 279.99917 * 11 9 8 15 15 C 1.52992 * 109.47355 * 174.99853 * 14 11 9 16 16 C 1.50692 * 109.47368 * 179.97438 * 15 14 11 17 17 H 1.08003 * 120.00117 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00502 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99468 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00472 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46797 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47261 * 120.00102 * 20 18 16 23 23 H 1.48499 * 109.47152 * 240.00294 * 20 18 16 24 24 S 1.70981 * 110.16367 * 0.22797 * 4 3 2 25 25 C 1.33637 * 122.74841 * 180.02562 * 2 1 3 26 26 C 1.50695 * 126.04031 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47349 * 89.97366 * 1 2 3 28 28 H 1.08993 * 109.47566 * 209.97580 * 1 2 3 29 29 H 1.09003 * 109.47560 * 329.97776 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00442 * 6 5 4 31 31 H 1.09001 * 109.46998 * 60.00038 * 6 5 4 32 32 H 1.09000 * 109.47050 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 34 34 H 1.09002 * 109.46719 * 299.99679 * 7 5 4 35 35 H 1.08993 * 109.47839 * 59.99520 * 7 5 4 36 36 H 0.97003 * 120.00212 * 359.97438 * 8 5 4 37 37 H 1.00901 * 110.99829 * 296.04432 * 13 11 9 38 38 H 1.00895 * 111.00242 * 60.00605 * 13 11 9 39 39 H 1.08996 * 109.47072 * 295.00360 * 14 11 9 40 40 H 1.09004 * 109.46813 * 54.99930 * 14 11 9 41 41 H 1.09002 * 109.47246 * 300.00956 * 15 14 11 42 42 H 1.09004 * 109.47098 * 60.00251 * 15 14 11 43 43 H 0.97007 * 119.99649 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.47323 * 89.99885 * 26 25 2 45 45 H 1.09004 * 109.47196 * 209.99958 * 26 25 2 46 46 H 1.09003 * 109.47038 * 329.99922 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 6 4.4835 2.1270 -0.0012 6 6 4.2674 2.9838 1.2480 7 6 4.2663 2.9831 -1.2505 8 7 5.8505 1.6004 -0.0010 9 6 6.8990 2.4472 -0.0020 10 8 6.7108 3.6453 -0.0026 11 6 8.3052 1.9054 -0.0013 12 1 8.3612 1.0394 -0.6608 13 7 9.2300 2.9433 -0.4762 14 6 8.6911 1.4901 1.4198 15 6 10.0692 0.8260 1.4007 16 6 10.4495 0.4176 2.8005 17 1 9.7758 0.6125 3.6218 18 6 11.6581 -0.2041 3.0330 19 7 12.4791 -0.4402 2.0331 20 14 12.1292 -0.7111 4.7680 21 1 11.0405 -0.3365 5.7059 22 1 12.3383 -2.1806 4.8148 23 1 13.3828 -0.0199 5.1625 24 16 3.9332 -0.6732 -0.0075 25 6 2.2298 -1.1240 -0.0005 26 6 1.6846 -2.5288 -0.0006 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3634 -0.8901 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 3.2502 3.3756 1.2482 31 1 4.4220 2.3739 2.1381 32 1 4.9756 3.8124 1.2473 33 1 4.9746 3.8117 -1.2508 34 1 4.4203 2.3728 -2.1404 35 1 3.2493 3.3750 -1.2502 36 1 6.0011 0.6421 -0.0002 37 1 9.0363 3.1887 -1.4356 38 1 9.1967 3.7572 0.1191 39 1 8.7213 2.3715 2.0604 40 1 7.9537 0.7859 1.8054 41 1 10.0390 -0.0553 0.7600 42 1 10.8065 1.5302 1.0152 43 1 13.3292 -0.8779 2.1966 44 1 1.5527 -2.8674 -1.0283 45 1 2.3831 -3.1897 0.5129 46 1 0.7236 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424149205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:30:34 Heat of formation + Delta-G solvation = -13.387960 kcal Electronic energy + Delta-G solvation = -25537.057406 eV Core-core repulsion = 21973.690660 eV Total energy + Delta-G solvation = -3563.366747 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.68236 -39.89891 -36.79068 -35.13085 -33.34085 -32.81995 -31.50753 -30.10799 -29.95148 -27.39958 -26.51269 -26.03322 -24.92978 -23.69430 -21.44118 -20.26867 -19.78063 -18.72082 -18.51074 -17.27609 -16.25419 -16.14198 -15.56433 -15.41434 -14.98735 -14.66687 -14.41570 -14.18938 -14.02753 -13.80609 -13.48918 -13.41187 -13.37448 -13.27253 -12.60989 -12.41204 -12.34069 -12.33392 -12.06399 -11.96975 -11.79553 -11.58380 -11.37936 -11.35241 -10.91813 -10.65681 -10.53169 -10.04979 -9.83845 -9.80891 -9.53285 -9.38183 -9.27460 -8.99212 -8.82527 -8.37112 -8.22241 -5.94495 -3.96473 0.39267 0.96904 1.43053 2.46712 2.68551 2.93839 3.33470 3.41196 3.45053 3.76565 4.46364 4.50054 4.57931 4.71279 4.79443 4.87580 4.90815 5.02449 5.05460 5.12238 5.27001 5.41197 5.42922 5.47965 5.49502 5.54633 5.58760 5.63598 5.69709 5.76555 5.80157 5.95177 6.13058 6.20121 6.35500 6.42310 6.63251 7.06597 7.28489 7.43970 7.52369 7.75530 7.77941 7.95313 8.12152 8.21045 8.47801 9.11688 9.66798 11.16419 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.003077 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.695297 B = 9097.027746 C =10448.934152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.060 3.940 3 N -0.458 5.458 4 C 0.047 3.953 5 C 0.254 3.746 6 C -0.152 4.152 7 C -0.151 4.151 8 N -0.729 5.729 9 C 0.493 3.507 10 O -0.541 6.541 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.805 5.805 14 C -0.096 4.096 15 C 0.031 3.969 16 C -0.521 4.521 17 H 0.052 0.948 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 S 0.127 5.873 25 C -0.227 4.227 26 C -0.075 4.075 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.397 0.603 37 H 0.334 0.666 38 H 0.349 0.651 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.013 0.987 42 H 0.036 0.964 43 H 0.259 0.741 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.041 -0.764 -7.646 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 N -0.171 5.171 4 C -0.232 4.232 5 C 0.164 3.836 6 C -0.212 4.212 7 C -0.210 4.210 8 N -0.384 5.384 9 C 0.279 3.721 10 O -0.418 6.418 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.333 5.333 14 C -0.134 4.134 15 C -0.006 4.006 16 C -0.560 4.560 17 H 0.071 0.929 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.210 1.210 24 S 0.385 5.615 25 C -0.348 4.348 26 C -0.134 4.134 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.651 -0.524 -7.553 23.883 hybrid contribution -1.422 -0.347 0.842 1.689 sum -24.073 -0.872 -6.711 25.006 Atomic orbital electron populations 1.20351 0.87008 1.03333 1.02866 1.20169 0.98137 0.85996 1.02848 1.65913 1.03937 1.31592 1.15706 1.26937 0.94558 0.97499 1.04201 1.18636 0.78237 0.88241 0.98461 1.22179 1.03510 1.00564 0.94922 1.22164 1.03627 1.00445 0.94770 1.46433 1.04919 1.10143 1.76950 1.22747 0.88525 0.87035 0.73744 1.90594 1.86231 1.15443 1.49524 1.21874 0.84008 0.96170 1.01694 0.88400 1.58989 1.52167 1.15343 1.06795 1.21670 1.01619 1.00170 0.89938 1.19018 0.89657 0.95445 0.96475 1.21311 1.02615 1.38168 0.93892 0.92934 1.24991 0.96569 0.96109 0.96668 1.69988 1.09895 1.42792 1.30485 0.86603 0.78445 0.78155 0.85181 1.19852 1.21111 1.21050 1.84027 1.07093 1.02171 1.68223 1.25762 0.94940 1.01150 1.12974 1.20259 1.01216 0.88927 1.02964 0.90673 0.90670 0.90585 0.90991 0.92406 0.89204 0.89283 0.92697 0.90914 0.76743 0.85381 0.83719 0.92686 0.92889 0.96865 0.94611 0.93159 0.90468 0.90894 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.06 36.00 0.36 -0.18 16 2 C 0.06 0.63 6.74 -84.23 -0.57 0.06 16 3 N -0.46 -5.65 10.51 -8.06 -0.08 -5.73 16 4 C 0.05 0.57 5.85 -13.46 -0.08 0.49 16 5 C 0.25 3.20 1.02 -132.97 -0.14 3.07 16 6 C -0.15 -1.99 8.38 37.16 0.31 -1.67 16 7 C -0.15 -1.83 8.38 37.16 0.31 -1.52 16 8 N -0.73 -9.51 5.08 -48.69 -0.25 -9.76 16 9 C 0.49 7.40 6.49 -10.98 -0.07 7.33 16 10 O -0.54 -8.96 12.46 5.56 0.07 -8.89 16 11 C 0.08 1.28 3.15 -68.86 -0.22 1.06 16 12 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 13 N -0.81 -13.04 8.44 -5.65 -0.05 -13.09 16 14 C -0.10 -1.89 4.78 -26.73 -0.13 -2.02 16 15 C 0.03 0.78 4.86 -27.89 -0.14 0.65 16 16 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 17 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 S 0.13 1.36 21.27 -107.50 -2.29 -0.93 16 25 C -0.23 -2.19 6.59 -35.92 -0.24 -2.42 16 26 C -0.07 -0.47 10.10 36.00 0.36 -0.11 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.39 6.72 -51.93 -0.35 0.04 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.30 6.17 -51.93 -0.32 0.98 16 33 H 0.09 1.19 6.17 -51.93 -0.32 0.87 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.40 4.78 6.76 -40.82 -0.28 4.51 16 37 H 0.33 4.66 9.06 -39.29 -0.36 4.30 16 38 H 0.35 5.69 8.58 -39.29 -0.34 5.36 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.39 6.76 -51.93 -0.35 0.04 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -32.10 384.59 -9.05 -41.15 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.33 Total: 9.49 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.63 Total: -8.66 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.36 Total: -54.59 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.07 Total: -8.89 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.29 Total: -0.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.10 -9.05 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424149205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.762 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds