Wall clock time and date at job start Sat Apr 11 2020 01:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31782 * 122.75225 * 2 1 4 4 C 1.29025 * 117.12882 * 180.02562 * 3 2 1 5 5 C 1.50698 * 124.92086 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47184 * 59.99423 * 5 4 3 7 7 C 1.52999 * 109.46824 * 300.00175 * 5 4 3 8 8 N 1.46492 * 109.47354 * 179.97438 * 5 4 3 9 9 C 1.34777 * 120.00147 * 179.97438 * 8 5 4 10 10 O 1.21280 * 120.00103 * 0.02562 * 9 8 5 11 11 C 1.50701 * 120.00115 * 179.97438 * 9 8 5 12 12 H 1.08996 * 109.46918 * 40.00338 * 11 9 8 13 13 N 1.46903 * 109.46769 * 160.00171 * 11 9 8 14 14 C 1.53003 * 109.47384 * 279.99917 * 11 9 8 15 15 C 1.52992 * 109.47355 * 174.99853 * 14 11 9 16 16 C 1.50692 * 109.47368 * 179.97438 * 15 14 11 17 17 H 1.08003 * 120.00117 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00502 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99468 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00472 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46797 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47261 * 120.00102 * 20 18 16 23 23 H 1.48499 * 109.47152 * 240.00294 * 20 18 16 24 24 S 1.70981 * 110.16367 * 0.22797 * 4 3 2 25 25 C 1.33637 * 122.74841 * 180.02562 * 2 1 3 26 26 C 1.50695 * 126.04031 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47349 * 89.97366 * 1 2 3 28 28 H 1.08993 * 109.47566 * 209.97580 * 1 2 3 29 29 H 1.09003 * 109.47560 * 329.97776 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00442 * 6 5 4 31 31 H 1.09001 * 109.46998 * 60.00038 * 6 5 4 32 32 H 1.09000 * 109.47050 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 34 34 H 1.09002 * 109.46719 * 299.99679 * 7 5 4 35 35 H 1.08993 * 109.47839 * 59.99520 * 7 5 4 36 36 H 0.97003 * 120.00212 * 359.97438 * 8 5 4 37 37 H 1.00901 * 110.99829 * 296.04432 * 13 11 9 38 38 H 1.00895 * 111.00242 * 60.00605 * 13 11 9 39 39 H 1.08996 * 109.47072 * 295.00360 * 14 11 9 40 40 H 1.09004 * 109.46813 * 54.99930 * 14 11 9 41 41 H 1.09002 * 109.47246 * 300.00956 * 15 14 11 42 42 H 1.09004 * 109.47098 * 60.00251 * 15 14 11 43 43 H 0.97007 * 119.99649 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.47323 * 89.99885 * 26 25 2 45 45 H 1.09004 * 109.47196 * 209.99958 * 26 25 2 46 46 H 1.09003 * 109.47038 * 329.99922 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 6 4.4835 2.1270 -0.0012 6 6 4.2674 2.9838 1.2480 7 6 4.2663 2.9831 -1.2505 8 7 5.8505 1.6004 -0.0010 9 6 6.8990 2.4472 -0.0020 10 8 6.7108 3.6453 -0.0026 11 6 8.3052 1.9054 -0.0013 12 1 8.3612 1.0394 -0.6608 13 7 9.2300 2.9433 -0.4762 14 6 8.6911 1.4901 1.4198 15 6 10.0692 0.8260 1.4007 16 6 10.4495 0.4176 2.8005 17 1 9.7758 0.6125 3.6218 18 6 11.6581 -0.2041 3.0330 19 7 12.4791 -0.4402 2.0331 20 14 12.1292 -0.7111 4.7680 21 1 11.0405 -0.3365 5.7059 22 1 12.3383 -2.1806 4.8148 23 1 13.3828 -0.0199 5.1625 24 16 3.9332 -0.6732 -0.0075 25 6 2.2298 -1.1240 -0.0005 26 6 1.6846 -2.5288 -0.0006 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3634 -0.8901 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 3.2502 3.3756 1.2482 31 1 4.4220 2.3739 2.1381 32 1 4.9756 3.8124 1.2473 33 1 4.9746 3.8117 -1.2508 34 1 4.4203 2.3728 -2.1404 35 1 3.2493 3.3750 -1.2502 36 1 6.0011 0.6421 -0.0002 37 1 9.0363 3.1887 -1.4356 38 1 9.1967 3.7572 0.1191 39 1 8.7213 2.3715 2.0604 40 1 7.9537 0.7859 1.8054 41 1 10.0390 -0.0553 0.7600 42 1 10.8065 1.5302 1.0152 43 1 13.3292 -0.8779 2.1966 44 1 1.5527 -2.8674 -1.0283 45 1 2.3831 -3.1897 0.5129 46 1 0.7236 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424149205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:30:32 Heat of formation + Delta-G solvation = -35.725645 kcal Electronic energy + Delta-G solvation = -25538.026041 eV Core-core repulsion = 21973.690660 eV Total energy + Delta-G solvation = -3564.335381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71433 -40.87684 -37.91585 -36.63144 -34.81246 -34.14127 -32.51927 -31.91749 -30.54347 -28.42350 -28.15513 -26.86863 -25.92824 -25.18931 -22.79390 -21.74053 -20.94231 -19.63389 -19.42084 -18.54731 -18.05761 -17.38640 -16.74719 -16.48330 -16.34882 -15.97698 -15.78811 -15.37213 -15.01537 -14.84554 -14.70505 -14.27896 -14.14870 -13.98150 -13.82471 -13.78938 -13.48263 -13.35580 -13.33265 -12.93204 -12.90615 -12.82111 -12.78277 -12.47857 -12.46725 -12.21029 -12.05747 -11.71930 -11.57616 -11.20138 -10.93411 -10.69478 -10.49010 -10.46640 -10.23852 -9.61603 -9.60595 -8.13040 -6.22801 -0.41760 0.16511 0.62606 1.41396 1.42208 1.44266 1.55173 1.68208 1.85250 2.45175 2.88006 3.20226 3.49074 3.66876 3.82417 3.86499 3.89333 3.99090 4.10386 4.11008 4.31147 4.54503 4.57523 4.62523 4.64103 4.66238 4.71976 4.78085 4.78406 4.84340 4.93768 4.97884 5.03358 5.11179 5.13762 5.25895 5.28861 5.39971 5.58824 5.85990 6.00203 6.07858 6.29442 6.31967 6.54769 6.65480 6.96066 7.01870 7.45236 8.98323 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.003077 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.695297 B = 9097.027746 C =10448.934152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.039 3.961 3 N -0.471 5.471 4 C 0.026 3.974 5 C 0.254 3.746 6 C -0.146 4.146 7 C -0.143 4.143 8 N -0.719 5.719 9 C 0.501 3.499 10 O -0.555 6.555 11 C 0.086 3.914 12 H 0.109 0.891 13 N -0.816 5.816 14 C -0.082 4.082 15 C 0.040 3.960 16 C -0.542 4.542 17 H 0.055 0.945 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.281 1.281 24 S 0.122 5.878 25 C -0.217 4.217 26 C -0.077 4.077 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.403 0.597 37 H 0.348 0.652 38 H 0.347 0.653 39 H 0.046 0.954 40 H 0.063 0.937 41 H -0.006 1.006 42 H 0.007 0.993 43 H 0.262 0.738 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.917 -2.005 -7.188 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 N -0.186 5.186 4 C -0.252 4.252 5 C 0.165 3.835 6 C -0.206 4.206 7 C -0.202 4.202 8 N -0.374 5.374 9 C 0.287 3.713 10 O -0.433 6.433 11 C -0.030 4.030 12 H 0.127 0.873 13 N -0.345 5.345 14 C -0.121 4.121 15 C 0.002 3.998 16 C -0.580 4.580 17 H 0.073 0.927 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.207 1.207 24 S 0.379 5.621 25 C -0.338 4.338 26 C -0.136 4.136 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.239 0.761 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.013 0.987 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.556 -1.769 -7.104 25.624 hybrid contribution -0.893 -0.010 0.666 1.114 sum -25.449 -1.779 -6.438 26.311 Atomic orbital electron populations 1.20455 0.84820 1.04218 1.03797 1.20691 0.99595 0.85695 1.03282 1.65920 1.04100 1.32913 1.15638 1.26720 0.94590 0.97872 1.05991 1.18602 0.77923 0.88679 0.98329 1.22092 1.03422 0.99999 0.95039 1.22069 1.03475 0.99919 0.94759 1.46315 1.04928 1.10269 1.75904 1.22304 0.88313 0.86813 0.73897 1.90600 1.86342 1.16055 1.50317 1.21651 0.84959 0.96736 0.99678 0.87345 1.58961 1.52485 1.15325 1.07737 1.21395 0.98863 0.99513 0.92303 1.18824 0.91941 0.94237 0.94752 1.21755 1.02944 1.38101 0.95189 0.92701 1.25879 0.96593 0.96124 1.00960 1.70112 1.10392 1.43627 1.32813 0.85510 0.78189 0.77957 0.80043 1.18874 1.20302 1.20702 1.83988 1.08581 1.01314 1.68186 1.26225 0.93859 1.02562 1.11205 1.20440 1.02071 0.86833 1.04210 0.89651 0.88457 0.91048 0.90313 0.92924 0.90755 0.90621 0.92299 0.90416 0.76054 0.83860 0.83880 0.93557 0.91818 0.98736 0.97407 0.92952 0.89044 0.90505 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.06 71.23 0.72 -0.16 16 2 C 0.04 0.74 6.74 41.52 0.28 1.01 16 3 N -0.47 -11.10 10.51 -179.41 -1.89 -12.99 16 4 C 0.03 0.62 5.85 88.52 0.52 1.14 16 5 C 0.25 6.28 1.02 2.86 0.00 6.28 16 6 C -0.15 -3.78 8.38 71.98 0.60 -3.18 16 7 C -0.14 -3.40 8.38 71.98 0.60 -2.80 16 8 N -0.72 -18.35 5.08 -426.33 -2.16 -20.51 16 9 C 0.50 14.83 6.49 87.66 0.57 15.40 16 10 O -0.56 -18.30 12.46 -3.03 -0.04 -18.34 16 11 C 0.09 2.77 3.15 44.17 0.14 2.91 16 12 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 13 N -0.82 -26.52 8.44 -171.79 -1.45 -27.97 16 14 C -0.08 -3.27 4.78 30.59 0.15 -3.12 16 15 C 0.04 2.04 4.86 29.84 0.15 2.18 16 16 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 17 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 18 C 0.00 0.13 5.46 84.65 0.46 0.59 16 19 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 20 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 S 0.12 2.47 21.27 -56.49 -1.20 1.27 16 25 C -0.22 -3.72 6.59 24.64 0.16 -3.56 16 26 C -0.08 -0.74 10.10 71.23 0.72 -0.02 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.69 6.72 -2.39 -0.02 0.68 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 2.16 6.17 -2.39 -0.01 2.14 16 33 H 0.07 2.01 6.17 -2.39 -0.01 2.00 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.40 9.39 6.76 -92.71 -0.63 8.77 16 37 H 0.35 9.59 9.06 -89.69 -0.81 8.77 16 38 H 0.35 11.45 8.58 -89.70 -0.77 10.68 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 41 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.01 0.43 7.75 -2.38 -0.02 0.41 16 43 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 44 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.10 0.60 6.76 -2.39 -0.02 0.58 16 Total: -1.00 -68.84 384.59 -0.32 -69.17 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -1.19 Total: 32.80 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 5.30 Total: -13.70 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -5.22 Total: -117.56 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.04 Total: -18.34 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.20 Total: 1.27 kcal Total: -68.84 -0.32 -69.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424149205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.440 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds