Wall clock time and date at job start Sat Apr 11 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47497 * 2 1 4 4 C 1.53003 * 109.47048 * 120.00536 * 2 1 3 5 5 C 1.52997 * 109.47278 * 184.99665 * 4 2 1 6 6 O 1.42894 * 109.47453 * 179.97438 * 5 4 2 7 7 C 1.42892 * 114.00595 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47626 * 180.02562 * 7 6 5 9 9 C 1.38233 * 119.99777 * 269.72338 * 8 7 6 10 10 C 1.38236 * 119.99609 * 179.76172 * 9 8 7 11 11 C 1.38238 * 120.00270 * 0.51339 * 10 9 8 12 12 C 1.38234 * 119.99768 * 359.74640 * 11 10 9 13 13 C 1.38230 * 119.99942 * 359.97438 * 12 11 10 14 14 N 1.46507 * 109.46914 * 240.00035 * 2 1 3 15 15 C 1.39686 * 119.99968 * 85.00354 * 14 2 1 16 16 C 1.39332 * 119.94952 * 359.97438 * 15 14 2 17 17 C 1.38479 * 120.42096 * 180.02562 * 16 15 14 18 18 C 1.37681 * 120.32688 * 359.97438 * 17 16 15 19 19 C 1.40749 * 119.89460 * 0.02802 * 18 17 16 20 20 C 1.41404 * 120.21094 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99954 * 24.32405 * 20 19 18 22 22 C 1.39936 * 120.00013 * 204.32893 * 20 19 18 23 23 N 1.30829 * 119.99885 * 17.73188 * 22 20 19 24 24 Si 1.86797 * 119.99747 * 197.73177 * 22 20 19 25 25 H 1.48507 * 109.47195 * 94.69122 * 24 22 20 26 26 H 1.48499 * 109.46959 * 214.68889 * 24 22 20 27 27 H 1.48503 * 109.47380 * 334.69105 * 24 22 20 28 28 C 1.38279 * 119.95101 * 179.72960 * 15 14 2 29 29 H 1.09000 * 109.47799 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46763 * 299.99893 * 1 2 3 31 31 H 1.08996 * 109.47055 * 59.99315 * 1 2 3 32 32 H 1.08998 * 109.46869 * 304.99479 * 4 2 1 33 33 H 1.08997 * 109.47160 * 64.99277 * 4 2 1 34 34 H 1.08998 * 109.47019 * 299.99723 * 5 4 2 35 35 H 1.09002 * 109.47070 * 59.99346 * 5 4 2 36 36 H 1.09007 * 109.46818 * 300.00381 * 7 6 5 37 37 H 1.09003 * 109.47127 * 59.99637 * 7 6 5 38 38 H 1.07998 * 120.00484 * 0.02562 * 9 8 7 39 39 H 1.08004 * 119.99831 * 180.23238 * 10 9 8 40 40 H 1.07998 * 119.99883 * 179.71861 * 11 10 9 41 41 H 1.07998 * 119.99574 * 179.97438 * 12 11 10 42 42 H 1.08006 * 120.00134 * 179.97438 * 13 12 11 43 43 H 0.97001 * 119.99781 * 265.00626 * 14 2 1 44 44 H 1.08004 * 119.78899 * 0.02950 * 16 15 14 45 45 H 1.08000 * 119.83519 * 180.02562 * 17 16 15 46 46 H 1.08008 * 120.05236 * 179.97438 * 18 17 16 47 47 H 0.97000 * 119.99547 * 180.02562 * 23 22 20 48 48 H 1.07996 * 120.15841 * 359.97155 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3137 6 8 4.0411 -1.2867 2.4806 7 6 5.4608 -1.2450 2.6371 8 6 5.8498 -1.9821 3.8926 9 6 5.9349 -1.3037 5.0940 10 6 6.2869 -1.9808 6.2466 11 6 6.5642 -3.3342 6.1959 12 6 6.4843 -4.0114 4.9935 13 6 6.1267 -3.3355 3.8420 14 7 2.0183 -0.6906 -1.1962 15 6 2.1517 0.0062 -2.3995 16 6 1.8196 1.3580 -2.4609 17 6 1.9477 2.0582 -3.6488 18 6 2.4054 1.4256 -4.7828 19 6 2.7447 0.0604 -4.7360 20 6 3.2150 -0.5960 -5.8968 21 1 3.6838 -0.0273 -6.6863 22 6 3.0730 -1.9825 -6.0226 23 7 2.2215 -2.6242 -5.2645 24 14 4.0993 -2.9168 -7.2728 25 1 5.3176 -3.4513 -6.6130 26 1 3.3024 -4.0410 -7.8263 27 1 4.4938 -2.0008 -8.3732 28 6 2.6180 -0.6452 -3.5265 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -0.2619 2.1369 33 1 1.7515 -1.7716 1.2055 34 1 3.9994 -1.0730 0.4259 35 1 3.8532 0.4367 1.3573 36 1 5.9351 -1.7177 1.7769 37 1 5.7882 -0.2078 2.7080 38 1 5.7222 -0.2456 5.1330 39 1 6.3498 -1.4516 7.1860 40 1 6.8437 -3.8622 7.0956 41 1 6.7013 -5.0686 4.9538 42 1 6.0646 -3.8646 2.9024 43 1 2.2489 -1.6318 -1.1527 44 1 1.4601 1.8630 -1.5765 45 1 1.6879 3.1058 -3.6856 46 1 2.5032 1.9759 -5.7070 47 1 2.1234 -3.5853 -5.3515 48 1 2.8799 -1.6919 -3.4789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877573568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:30:46 Heat of formation + Delta-G solvation = -25.975856 kcal Electronic energy + Delta-G solvation = -25927.879017 eV Core-core repulsion = 22332.062811 eV Total energy + Delta-G solvation = -3595.816207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.35680 -39.89501 -38.79056 -37.42119 -35.37405 -33.53649 -32.63924 -31.82035 -31.34331 -30.05971 -28.66797 -27.10629 -26.86302 -24.18008 -23.50540 -23.15915 -22.38591 -22.09681 -21.10633 -19.09626 -17.97838 -17.66311 -17.47279 -17.15787 -16.62019 -16.51788 -16.30452 -16.16840 -15.62188 -15.31365 -14.85740 -14.61043 -14.34149 -14.27675 -14.09255 -13.91242 -13.82726 -13.69470 -13.37641 -13.25019 -12.89044 -12.81700 -12.68351 -12.47474 -12.35857 -12.14321 -12.07782 -11.92524 -11.88126 -11.70892 -11.47048 -11.24252 -11.07817 -10.65422 -10.47424 -9.85368 -9.79026 -9.22964 -8.61464 -7.87366 -6.30936 0.30852 0.46960 1.09319 1.35912 1.37755 1.50861 1.58692 2.22652 2.51606 2.79413 2.85915 3.05617 3.78870 3.86878 3.87499 4.00490 4.05634 4.11608 4.19771 4.27041 4.30493 4.37750 4.43264 4.51669 4.55228 4.61859 4.66211 4.73276 4.79938 4.88600 4.91746 4.99532 5.04422 5.07146 5.12775 5.14712 5.21108 5.34398 5.39531 5.50503 5.52243 5.58101 5.63028 5.64377 5.98691 6.06558 6.13664 6.16179 6.23596 6.29656 6.60262 6.96341 7.07532 7.08989 7.27543 8.38780 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.002436 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.640852 B =11492.538209 C =13036.893534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.159 3.841 3 H 0.075 0.925 4 C -0.110 4.110 5 C 0.066 3.934 6 O -0.396 6.396 7 C 0.099 3.901 8 C -0.108 4.108 9 C -0.112 4.112 10 C -0.129 4.129 11 C -0.120 4.120 12 C -0.131 4.131 13 C -0.118 4.118 14 N -0.749 5.749 15 C 0.226 3.774 16 C -0.299 4.299 17 C -0.064 4.064 18 C -0.287 4.287 19 C 0.107 3.893 20 C -0.504 4.504 21 H 0.070 0.930 22 C 0.037 3.963 23 N -0.822 5.822 24 Si 0.978 3.022 25 H -0.263 1.263 26 H -0.268 1.268 27 H -0.260 1.260 28 C -0.260 4.260 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.122 0.878 43 H 0.389 0.611 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.087 0.913 47 H 0.284 0.716 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 -1.314 21.925 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.053 3.947 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.011 4.011 6 O -0.317 6.317 7 C 0.023 3.977 8 C -0.108 4.108 9 C -0.130 4.130 10 C -0.146 4.146 11 C -0.138 4.138 12 C -0.149 4.149 13 C -0.136 4.136 14 N -0.381 5.381 15 C 0.125 3.875 16 C -0.322 4.322 17 C -0.082 4.082 18 C -0.308 4.308 19 C 0.104 3.896 20 C -0.534 4.534 21 H 0.088 0.912 22 C -0.178 4.178 23 N -0.448 5.448 24 Si 0.799 3.201 25 H -0.188 1.188 26 H -0.193 1.193 27 H -0.184 1.184 28 C -0.284 4.284 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.150 0.850 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.159 0.841 42 H 0.140 0.860 43 H 0.223 0.777 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.376 -1.479 22.233 22.921 hybrid contribution 0.496 -0.722 -1.296 1.564 sum 5.872 -2.201 20.937 21.856 Atomic orbital electron populations 1.22211 0.95459 1.02057 1.02174 1.20777 0.93880 0.96578 0.83431 0.90657 1.21678 0.93290 1.01980 0.97838 1.22482 0.95471 0.96244 0.86867 1.87881 1.21559 1.77261 1.44955 1.21383 0.81620 0.99571 0.95110 1.19769 1.01436 0.94688 0.94883 1.21305 0.98803 1.00784 0.92095 1.21491 0.99291 0.95084 0.98766 1.21568 0.98791 0.94819 0.98582 1.21454 0.99834 1.01042 0.92565 1.21289 0.98977 0.93804 0.99530 1.44695 1.74835 1.11599 1.06947 1.17706 0.92775 0.91353 0.85694 1.20251 1.19905 0.93360 0.98647 1.20655 0.96712 0.98343 0.92524 1.21004 1.15384 0.96283 0.98082 1.17722 0.87439 0.91771 0.92666 1.19794 1.36688 0.93197 1.03687 0.91210 1.26694 0.94298 0.98493 0.98295 1.69928 1.27715 1.10496 1.36664 0.85262 0.78683 0.77812 0.78324 1.18826 1.19273 1.18378 1.20650 1.15779 0.99991 0.92018 0.92918 0.89736 0.93855 0.88293 0.91136 0.94205 0.92701 0.92673 0.91484 0.84998 0.83587 0.83506 0.84093 0.85960 0.77714 0.86629 0.86496 0.89456 0.90550 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 9.42 71.98 0.68 -3.50 16 2 C 0.16 4.41 2.27 44.99 0.10 4.51 16 3 H 0.08 2.13 6.47 -2.39 -0.02 2.11 16 4 C -0.11 -2.57 5.12 30.59 0.16 -2.42 16 5 C 0.07 1.66 5.83 71.98 0.42 2.08 16 6 O -0.40 -10.29 10.33 -148.98 -1.54 -11.82 16 7 C 0.10 2.22 6.06 71.24 0.43 2.65 16 8 C -0.11 -2.31 5.51 -19.87 -0.11 -2.42 16 9 C -0.11 -2.06 9.70 22.27 0.22 -1.84 16 10 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 11 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 12 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 13 C -0.12 -2.40 9.70 22.27 0.22 -2.18 16 14 N -0.75 -27.18 4.70 -319.11 -1.50 -28.68 16 15 C 0.23 10.31 6.63 38.16 0.25 10.56 16 16 C -0.30 -12.95 8.85 22.59 0.20 -12.75 16 17 C -0.06 -2.88 10.01 22.20 0.22 -2.66 16 18 C -0.29 -14.85 9.79 22.75 0.22 -14.62 16 19 C 0.11 6.04 5.57 -21.31 -0.12 5.93 16 20 C -0.50 -28.45 9.05 23.46 0.21 -28.23 16 21 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 22 C 0.04 1.93 5.14 85.25 0.44 2.36 16 23 N -0.82 -44.29 10.96 21.82 0.24 -44.05 16 24 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 26 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 27 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 28 C -0.26 -13.95 8.53 22.86 0.20 -13.75 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.04 1.32 7.69 -2.39 -0.02 1.30 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.14 7.75 -2.39 -0.02 1.12 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.23 8.09 -2.38 -0.02 1.21 16 37 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 38 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 42 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.39 14.04 8.61 -92.71 -0.80 13.24 16 44 H 0.12 4.30 6.07 -2.91 -0.02 4.28 16 45 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 46 H 0.09 4.35 8.06 -2.91 -0.02 4.32 16 47 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 48 H 0.10 5.49 6.16 -2.91 -0.02 5.47 16 Total: -1.00 -64.59 396.48 3.78 -60.81 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: 0.14 Total: 43.48 kcal Atomic # 6 Polarization: -65.86 SS G_CDS: 4.41 Total: -61.45 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.26 Total: -72.73 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.54 Total: -11.82 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -64.59 3.78 -60.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877573568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.832 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds