Wall clock time and date at job start Sat Apr 11 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47243 * 2 1 4 4 C 1.53005 * 109.46951 * 239.99659 * 2 1 3 5 5 C 1.53002 * 109.46887 * 174.99960 * 4 2 1 6 6 O 1.42895 * 109.46927 * 179.97438 * 5 4 2 7 7 C 1.42907 * 113.99901 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47301 * 179.97438 * 7 6 5 9 9 C 1.38230 * 120.00300 * 269.73420 * 8 7 6 10 10 C 1.38241 * 119.99993 * 179.76511 * 9 8 7 11 11 C 1.38231 * 119.99515 * 0.50416 * 10 9 8 12 12 C 1.38232 * 120.00493 * 359.74604 * 11 10 9 13 13 C 1.38235 * 119.99945 * 0.02562 * 12 11 10 14 14 N 1.46497 * 109.46927 * 119.99994 * 2 1 3 15 15 C 1.39682 * 119.99940 * 274.99811 * 14 2 1 16 16 C 1.39343 * 119.95139 * 0.02562 * 15 14 2 17 17 C 1.38470 * 120.42275 * 179.97438 * 16 15 14 18 18 C 1.37690 * 120.32905 * 0.25682 * 17 16 15 19 19 C 1.40748 * 119.89015 * 359.49681 * 18 17 16 20 20 C 1.41403 * 120.20614 * 180.25474 * 19 18 17 21 21 H 1.08003 * 120.00093 * 204.60692 * 20 19 18 22 22 C 1.39932 * 120.00264 * 24.60668 * 20 19 18 23 23 N 1.30831 * 120.00018 * 17.73629 * 22 20 19 24 24 Si 1.86802 * 119.99939 * 197.74299 * 22 20 19 25 25 H 1.48492 * 109.47219 * 59.99678 * 24 22 20 26 26 H 1.48502 * 109.46677 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46999 * 299.99377 * 24 22 20 28 28 C 1.38273 * 119.95547 * 179.97438 * 15 14 2 29 29 H 1.08994 * 109.47243 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47499 * 300.00426 * 1 2 3 31 31 H 1.09003 * 109.47115 * 60.00040 * 1 2 3 32 32 H 1.08997 * 109.47160 * 295.00291 * 4 2 1 33 33 H 1.09002 * 109.47011 * 55.00496 * 4 2 1 34 34 H 1.08997 * 109.47491 * 300.00128 * 5 4 2 35 35 H 1.09002 * 109.46858 * 60.00442 * 5 4 2 36 36 H 1.08994 * 109.46984 * 300.00563 * 7 6 5 37 37 H 1.09001 * 109.46796 * 60.00402 * 7 6 5 38 38 H 1.08003 * 119.99917 * 359.97438 * 9 8 7 39 39 H 1.07995 * 119.99993 * 180.22390 * 10 9 8 40 40 H 1.08004 * 119.99758 * 179.72555 * 11 10 9 41 41 H 1.08004 * 120.00149 * 179.97438 * 12 11 10 42 42 H 1.08000 * 120.00211 * 179.97438 * 13 12 11 43 43 H 0.97005 * 120.00604 * 94.99739 * 14 2 1 44 44 H 1.08002 * 119.78533 * 359.95569 * 16 15 14 45 45 H 1.08003 * 119.83539 * 179.97438 * 17 16 15 46 46 H 1.08000 * 120.05200 * 179.72359 * 18 17 16 47 47 H 0.96998 * 120.00313 * 180.02562 * 23 22 20 48 48 H 1.08004 * 120.16163 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 8 4.0412 -1.2876 -2.4801 7 6 5.4610 -1.2458 -2.6364 8 6 5.8502 -1.9840 -3.8913 9 6 6.1329 -3.3360 -3.8384 10 6 6.4852 -4.0141 -4.9905 11 6 6.5648 -3.3378 -6.1934 12 6 6.2871 -1.9846 -6.2454 13 6 5.9302 -1.3076 -5.0943 14 7 2.0183 -0.6906 1.1962 15 6 2.1517 0.0062 2.3994 16 6 1.8196 1.3581 2.4609 17 6 1.9475 2.0582 3.6487 18 6 2.4098 1.4268 4.7816 19 6 2.7443 0.0604 4.7360 20 6 3.2146 -0.5960 5.8969 21 1 3.8293 -1.4793 5.8061 22 6 2.8836 -0.1010 7.1632 23 7 1.8838 0.7319 7.2992 24 14 3.8693 -0.6294 8.6594 25 1 5.2899 -0.2359 8.4805 26 1 3.3218 0.0316 9.8713 27 1 3.7798 -2.1034 8.8158 28 6 2.6121 -0.6466 3.5280 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4368 -1.3574 35 1 3.9994 -1.0729 -0.4259 36 1 5.7883 -0.2087 -2.7082 37 1 5.9353 -1.7178 -1.7759 38 1 6.0754 -3.8633 -2.8977 39 1 6.7026 -5.0711 -4.9498 40 1 6.8443 -3.8666 -7.0927 41 1 6.3497 -1.4562 -7.1853 42 1 5.7136 -0.2503 -5.1348 43 1 2.2490 -1.6318 1.1527 44 1 1.4603 1.8631 1.5764 45 1 1.6878 3.1059 3.6855 46 1 2.5121 1.9783 5.7045 47 1 1.6546 1.0753 8.1769 48 1 2.8687 -1.6947 3.4818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877573569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:30:50 Heat of formation + Delta-G solvation = -12.989931 kcal Electronic energy + Delta-G solvation = -25662.357592 eV Core-core repulsion = 22067.104497 eV Total energy + Delta-G solvation = -3595.253095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.62524 -38.45470 -37.62044 -36.01389 -33.58369 -32.39748 -31.29864 -31.17138 -29.76429 -28.93557 -26.92660 -26.06581 -25.15895 -23.10992 -22.85103 -21.66639 -21.35250 -20.59614 -19.57290 -17.43475 -17.18381 -16.58192 -16.28832 -15.73784 -15.59843 -15.16602 -15.09566 -14.72243 -14.40132 -14.28635 -13.68833 -13.45432 -13.24080 -12.96482 -12.87505 -12.81465 -12.57808 -12.32303 -12.08701 -11.68779 -11.57846 -11.46598 -11.36275 -11.20786 -11.13812 -11.02725 -10.95779 -10.68634 -10.56460 -10.30380 -9.73955 -9.68199 -9.29967 -9.20137 -9.18788 -9.10276 -8.71640 -7.36768 -6.69530 -6.18816 -4.29343 0.99759 1.13444 2.88469 3.09750 3.12720 3.24615 3.30316 3.39214 3.85425 3.97639 4.22452 4.55405 4.57589 4.73199 4.73494 4.84468 4.99631 5.06349 5.08595 5.17090 5.23134 5.30004 5.38773 5.51810 5.58993 5.69768 5.71890 5.76825 5.87347 5.88401 5.99496 6.02240 6.16906 6.22356 6.26539 6.34198 6.36250 6.48843 6.60433 6.70699 7.05856 7.08847 7.10154 7.13537 7.36509 7.42071 7.81153 7.93326 8.16236 8.27415 8.53184 8.65963 8.81043 9.01756 9.14232 10.26581 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.002060 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.187361 B =13589.950278 C =14797.635315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.160 3.840 3 H 0.076 0.924 4 C -0.121 4.121 5 C 0.063 3.937 6 O -0.385 6.385 7 C 0.102 3.898 8 C -0.087 4.087 9 C -0.099 4.099 10 C -0.124 4.124 11 C -0.118 4.118 12 C -0.125 4.125 13 C -0.100 4.100 14 N -0.758 5.758 15 C 0.226 3.774 16 C -0.303 4.303 17 C -0.075 4.075 18 C -0.200 4.200 19 C 0.141 3.859 20 C -0.465 4.465 21 H 0.074 0.926 22 C 0.078 3.922 23 N -0.792 5.792 24 Si 0.906 3.094 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.290 4.290 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.387 0.613 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.114 0.886 47 H 0.279 0.721 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -4.156 -21.158 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 H 0.094 0.906 4 C -0.159 4.159 5 C -0.013 4.013 6 O -0.305 6.305 7 C 0.025 3.975 8 C -0.087 4.087 9 C -0.117 4.117 10 C -0.142 4.142 11 C -0.136 4.136 12 C -0.143 4.143 13 C -0.118 4.118 14 N -0.391 5.391 15 C 0.128 3.872 16 C -0.326 4.326 17 C -0.094 4.094 18 C -0.220 4.220 19 C 0.138 3.862 20 C -0.495 4.495 21 H 0.093 0.907 22 C -0.140 4.140 23 N -0.417 5.417 24 Si 0.730 3.270 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.314 4.314 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.220 0.780 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.131 0.869 47 H 0.090 0.910 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.583 -3.962 -21.202 22.280 hybrid contribution 0.525 -0.454 0.919 1.152 sum 6.109 -4.416 -20.283 21.638 Atomic orbital electron populations 1.22269 0.96403 1.01894 1.01879 1.20578 0.93257 0.96787 0.84067 0.90610 1.21791 0.93615 1.02127 0.98389 1.22550 0.95213 0.96171 0.87404 1.87911 1.20324 1.77034 1.45246 1.21282 0.82618 0.98855 0.94711 1.19667 1.00162 0.94252 0.94591 1.21120 0.98154 0.93636 0.98778 1.21163 1.00334 0.99988 0.92716 1.21194 0.99791 0.94679 0.97904 1.21149 1.00157 0.94725 0.98249 1.21092 0.98529 1.00134 0.92023 1.44571 1.75877 1.11438 1.07254 1.17450 0.94134 0.91045 0.84559 1.19882 1.21258 0.93576 0.97836 1.20440 0.98687 0.97062 0.93245 1.21166 1.08559 0.95038 0.97282 1.17332 0.86648 0.91125 0.91071 1.19509 1.28788 1.11131 0.90047 0.90746 1.25889 0.93688 0.93680 1.00759 1.69853 1.21263 1.24978 1.25631 0.86420 0.80988 0.79696 0.79866 1.18902 1.20422 1.19114 1.20392 1.19195 0.98119 0.93693 0.92845 0.91590 0.92807 0.90998 0.90412 0.93262 0.92461 0.92464 0.92319 0.85830 0.85915 0.86085 0.85961 0.85928 0.78018 0.89569 0.89761 0.86862 0.91006 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.42 37.16 0.35 -1.91 16 2 C 0.16 2.28 2.27 -67.93 -0.15 2.12 16 3 H 0.08 1.15 6.47 -51.93 -0.34 0.81 16 4 C -0.12 -1.46 5.12 -26.73 -0.14 -1.60 16 5 C 0.06 0.78 5.83 37.16 0.22 1.00 16 6 O -0.39 -4.91 10.33 -35.23 -0.36 -5.27 16 7 C 0.10 1.09 6.06 36.01 0.22 1.31 16 8 C -0.09 -0.90 5.51 -104.62 -0.58 -1.48 16 9 C -0.10 -0.96 9.70 -39.58 -0.38 -1.35 16 10 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 11 C -0.12 -0.94 10.05 -39.59 -0.40 -1.33 16 12 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 13 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 14 N -0.76 -13.09 4.70 -52.22 -0.25 -13.33 16 15 C 0.23 4.98 6.63 -83.86 -0.56 4.43 16 16 C -0.30 -6.77 8.85 -39.08 -0.35 -7.11 16 17 C -0.08 -1.80 10.01 -39.70 -0.40 -2.20 16 18 C -0.20 -5.32 8.69 -38.83 -0.34 -5.66 16 19 C 0.14 3.84 5.57 -106.85 -0.60 3.24 16 20 C -0.46 -12.57 9.05 -37.74 -0.34 -12.91 16 21 H 0.07 1.94 7.91 -52.48 -0.41 1.52 16 22 C 0.08 1.98 5.14 -17.34 -0.09 1.90 16 23 N -0.79 -20.88 10.96 55.55 0.61 -20.27 16 24 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 28 C -0.29 -7.17 9.63 -38.68 -0.37 -7.55 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.05 7.69 -51.93 -0.40 0.65 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.39 6.24 8.61 -40.82 -0.35 5.88 16 44 H 0.09 1.73 6.07 -52.49 -0.32 1.41 16 45 H 0.08 1.82 8.06 -52.48 -0.42 1.39 16 46 H 0.11 3.12 6.16 -52.49 -0.32 2.79 16 47 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 48 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -29.16 396.48 -11.73 -40.89 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -7.59 Total: 11.38 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: -5.08 Total: -33.30 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.36 Total: -33.60 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.36 Total: -5.27 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.16 -11.73 -40.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877573569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.904 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds