Wall clock time and date at job start Sat Apr 11 2020 01:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47243 * 2 1 4 4 C 1.53005 * 109.46951 * 239.99659 * 2 1 3 5 5 C 1.53002 * 109.46887 * 174.99960 * 4 2 1 6 6 O 1.42895 * 109.46927 * 179.97438 * 5 4 2 7 7 C 1.42907 * 113.99901 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47301 * 179.97438 * 7 6 5 9 9 C 1.38230 * 120.00300 * 269.73420 * 8 7 6 10 10 C 1.38241 * 119.99993 * 179.76511 * 9 8 7 11 11 C 1.38231 * 119.99515 * 0.50416 * 10 9 8 12 12 C 1.38232 * 120.00493 * 359.74604 * 11 10 9 13 13 C 1.38235 * 119.99945 * 0.02562 * 12 11 10 14 14 N 1.46497 * 109.46927 * 119.99994 * 2 1 3 15 15 C 1.39682 * 119.99940 * 274.99811 * 14 2 1 16 16 C 1.39343 * 119.95139 * 0.02562 * 15 14 2 17 17 C 1.38470 * 120.42275 * 179.97438 * 16 15 14 18 18 C 1.37690 * 120.32905 * 0.25682 * 17 16 15 19 19 C 1.40748 * 119.89015 * 359.49681 * 18 17 16 20 20 C 1.41403 * 120.20614 * 180.25474 * 19 18 17 21 21 H 1.08003 * 120.00093 * 204.60692 * 20 19 18 22 22 C 1.39932 * 120.00264 * 24.60668 * 20 19 18 23 23 N 1.30831 * 120.00018 * 17.73629 * 22 20 19 24 24 Si 1.86802 * 119.99939 * 197.74299 * 22 20 19 25 25 H 1.48492 * 109.47219 * 59.99678 * 24 22 20 26 26 H 1.48502 * 109.46677 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46999 * 299.99377 * 24 22 20 28 28 C 1.38273 * 119.95547 * 179.97438 * 15 14 2 29 29 H 1.08994 * 109.47243 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47499 * 300.00426 * 1 2 3 31 31 H 1.09003 * 109.47115 * 60.00040 * 1 2 3 32 32 H 1.08997 * 109.47160 * 295.00291 * 4 2 1 33 33 H 1.09002 * 109.47011 * 55.00496 * 4 2 1 34 34 H 1.08997 * 109.47491 * 300.00128 * 5 4 2 35 35 H 1.09002 * 109.46858 * 60.00442 * 5 4 2 36 36 H 1.08994 * 109.46984 * 300.00563 * 7 6 5 37 37 H 1.09001 * 109.46796 * 60.00402 * 7 6 5 38 38 H 1.08003 * 119.99917 * 359.97438 * 9 8 7 39 39 H 1.07995 * 119.99993 * 180.22390 * 10 9 8 40 40 H 1.08004 * 119.99758 * 179.72555 * 11 10 9 41 41 H 1.08004 * 120.00149 * 179.97438 * 12 11 10 42 42 H 1.08000 * 120.00211 * 179.97438 * 13 12 11 43 43 H 0.97005 * 120.00604 * 94.99739 * 14 2 1 44 44 H 1.08002 * 119.78533 * 359.95569 * 16 15 14 45 45 H 1.08003 * 119.83539 * 179.97438 * 17 16 15 46 46 H 1.08000 * 120.05200 * 179.72359 * 18 17 16 47 47 H 0.96998 * 120.00313 * 180.02562 * 23 22 20 48 48 H 1.08004 * 120.16163 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 8 4.0412 -1.2876 -2.4801 7 6 5.4610 -1.2458 -2.6364 8 6 5.8502 -1.9840 -3.8913 9 6 6.1329 -3.3360 -3.8384 10 6 6.4852 -4.0141 -4.9905 11 6 6.5648 -3.3378 -6.1934 12 6 6.2871 -1.9846 -6.2454 13 6 5.9302 -1.3076 -5.0943 14 7 2.0183 -0.6906 1.1962 15 6 2.1517 0.0062 2.3994 16 6 1.8196 1.3581 2.4609 17 6 1.9475 2.0582 3.6487 18 6 2.4098 1.4268 4.7816 19 6 2.7443 0.0604 4.7360 20 6 3.2146 -0.5960 5.8969 21 1 3.8293 -1.4793 5.8061 22 6 2.8836 -0.1010 7.1632 23 7 1.8838 0.7319 7.2992 24 14 3.8693 -0.6294 8.6594 25 1 5.2899 -0.2359 8.4805 26 1 3.3218 0.0316 9.8713 27 1 3.7798 -2.1034 8.8158 28 6 2.6121 -0.6466 3.5280 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4368 -1.3574 35 1 3.9994 -1.0729 -0.4259 36 1 5.7883 -0.2087 -2.7082 37 1 5.9353 -1.7178 -1.7759 38 1 6.0754 -3.8633 -2.8977 39 1 6.7026 -5.0711 -4.9498 40 1 6.8443 -3.8666 -7.0927 41 1 6.3497 -1.4562 -7.1853 42 1 5.7136 -0.2503 -5.1348 43 1 2.2490 -1.6318 1.1527 44 1 1.4603 1.8631 1.5764 45 1 1.6878 3.1059 3.6855 46 1 2.5121 1.9783 5.7045 47 1 1.6546 1.0753 8.1769 48 1 2.8687 -1.6947 3.4818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877573569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:30:49 Heat of formation + Delta-G solvation = -26.139748 kcal Electronic energy + Delta-G solvation = -25662.927811 eV Core-core repulsion = 22067.104497 eV Total energy + Delta-G solvation = -3595.823314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.34793 -39.90827 -38.78459 -37.46625 -35.36860 -33.41763 -32.57262 -31.81019 -31.65515 -30.02415 -28.59240 -27.11416 -26.85077 -24.18511 -23.49629 -23.04070 -22.44355 -22.20903 -21.07009 -19.22265 -17.90652 -17.52074 -17.50262 -17.10945 -16.80358 -16.44697 -16.32072 -16.18255 -15.61448 -15.30700 -14.89285 -14.60831 -14.32927 -14.25162 -14.08665 -13.91209 -13.80461 -13.68281 -13.34966 -13.29764 -12.99988 -12.78072 -12.66046 -12.48047 -12.34110 -12.17109 -12.05451 -11.91365 -11.87337 -11.69552 -11.58754 -11.17048 -11.04819 -10.64149 -10.44102 -9.84343 -9.78053 -9.31887 -8.60021 -7.90912 -6.31240 0.31872 0.47931 1.06941 1.36261 1.39175 1.49944 1.61371 2.22568 2.52573 2.79680 2.81897 3.06528 3.79755 3.86999 3.88034 4.01562 4.05682 4.12539 4.20462 4.28091 4.31406 4.39006 4.44136 4.51987 4.53276 4.62576 4.66308 4.74273 4.76886 4.87346 4.93473 5.01984 5.05498 5.12813 5.13779 5.17699 5.18176 5.29516 5.42046 5.45045 5.53177 5.59149 5.62428 5.65248 5.97614 6.04405 6.07484 6.17290 6.22432 6.33788 6.64619 6.92158 7.03567 7.07294 7.27451 8.38087 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.002060 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.187361 B =13589.950278 C =14797.635315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.073 0.927 4 C -0.110 4.110 5 C 0.065 3.935 6 O -0.396 6.396 7 C 0.099 3.901 8 C -0.108 4.108 9 C -0.117 4.117 10 C -0.131 4.131 11 C -0.120 4.120 12 C -0.129 4.129 13 C -0.113 4.113 14 N -0.748 5.748 15 C 0.239 3.761 16 C -0.301 4.301 17 C -0.076 4.076 18 C -0.234 4.234 19 C 0.111 3.889 20 C -0.504 4.504 21 H 0.071 0.929 22 C 0.035 3.965 23 N -0.824 5.824 24 Si 0.981 3.019 25 H -0.261 1.261 26 H -0.267 1.267 27 H -0.260 1.260 28 C -0.313 4.313 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.125 0.875 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.393 0.607 44 H 0.115 0.885 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.286 0.714 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.044 -4.499 -23.373 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.011 4.011 6 O -0.316 6.316 7 C 0.023 3.977 8 C -0.108 4.108 9 C -0.135 4.135 10 C -0.149 4.149 11 C -0.138 4.138 12 C -0.147 4.147 13 C -0.131 4.131 14 N -0.380 5.380 15 C 0.138 3.862 16 C -0.324 4.324 17 C -0.095 4.095 18 C -0.255 4.255 19 C 0.109 3.891 20 C -0.533 4.533 21 H 0.089 0.911 22 C -0.180 4.180 23 N -0.450 5.450 24 Si 0.802 3.198 25 H -0.186 1.186 26 H -0.191 1.191 27 H -0.184 1.184 28 C -0.337 4.337 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.227 0.773 44 H 0.132 0.868 45 H 0.124 0.876 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.702 -4.317 -23.470 24.535 hybrid contribution 0.455 -0.356 1.380 1.496 sum 6.157 -4.673 -22.090 23.403 Atomic orbital electron populations 1.22216 0.95420 1.02240 1.02131 1.20773 0.93893 0.96572 0.83491 0.90925 1.21676 0.93267 1.02123 0.97693 1.22494 0.95481 0.96187 0.86986 1.87886 1.21540 1.77144 1.45076 1.21381 0.81632 0.99504 0.95150 1.19771 1.01408 0.94747 0.94833 1.21293 0.98893 0.93726 0.99550 1.21459 0.99828 1.01038 0.92540 1.21563 0.98824 0.94793 0.98633 1.21480 0.99337 0.95114 0.98767 1.21303 0.98842 1.00754 0.92171 1.44659 1.74841 1.11742 1.06723 1.17472 0.92112 0.91184 0.85421 1.20182 1.20289 0.93705 0.98209 1.20732 0.97510 0.98259 0.92991 1.21089 1.11502 0.95179 0.97685 1.17701 0.87399 0.91808 0.92230 1.19764 1.30226 1.11965 0.91363 0.91097 1.26760 0.94284 0.93466 1.03466 1.69916 1.22383 1.25888 1.26782 0.85283 0.79133 0.79489 0.75934 1.18564 1.19123 1.18427 1.20508 1.20566 0.98350 0.94277 0.92510 0.93959 0.89906 0.90740 0.88475 0.92955 0.93867 0.91657 0.92442 0.85746 0.84054 0.83585 0.83719 0.85123 0.77280 0.86753 0.87567 0.88772 0.90317 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.42 71.98 0.68 -3.30 16 2 C 0.16 4.14 2.27 44.99 0.10 4.24 16 3 H 0.07 2.00 6.47 -2.39 -0.02 1.98 16 4 C -0.11 -2.37 5.12 30.60 0.16 -2.21 16 5 C 0.06 1.52 5.83 71.98 0.42 1.94 16 6 O -0.40 -9.67 10.33 -148.98 -1.54 -11.21 16 7 C 0.10 2.09 6.06 71.24 0.43 2.52 16 8 C -0.11 -2.19 5.51 -19.87 -0.11 -2.30 16 9 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 10 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 11 C -0.12 -1.65 10.05 22.27 0.22 -1.42 16 12 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 13 C -0.11 -1.99 9.70 22.27 0.22 -1.78 16 14 N -0.75 -24.93 4.70 -319.12 -1.50 -26.43 16 15 C 0.24 10.46 6.63 38.16 0.25 10.72 16 16 C -0.30 -13.17 8.85 22.59 0.20 -12.97 16 17 C -0.08 -3.66 10.01 22.20 0.22 -3.44 16 18 C -0.23 -12.90 8.69 22.75 0.20 -12.70 16 19 C 0.11 6.31 5.57 -21.31 -0.12 6.19 16 20 C -0.50 -28.38 9.05 23.46 0.21 -28.16 16 21 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 22 C 0.04 1.84 5.14 85.25 0.44 2.28 16 23 N -0.82 -44.82 10.96 21.82 0.24 -44.58 16 24 Si 0.98 39.55 29.59 68.60 2.03 41.58 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 27 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 28 C -0.31 -15.89 9.63 22.85 0.22 -15.67 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.25 7.69 -2.39 -0.02 1.23 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 1.13 7.75 -2.39 -0.02 1.11 16 36 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 37 H 0.06 1.18 8.08 -2.39 -0.02 1.16 16 38 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 42 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.39 12.29 8.61 -92.70 -0.80 11.50 16 44 H 0.11 4.32 6.07 -2.91 -0.02 4.30 16 45 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 46 H 0.09 5.45 6.16 -2.91 -0.02 5.43 16 47 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 48 H 0.09 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -64.92 396.48 3.78 -61.14 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: 0.14 Total: 41.00 kcal Atomic # 6 Polarization: -65.91 SS G_CDS: 4.41 Total: -61.50 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -1.26 Total: -71.01 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -1.54 Total: -11.21 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -64.92 3.78 -61.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877573569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.999 kcal (2) G-P(sol) polarization free energy of solvation -64.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds