Wall clock time and date at job start Sat Apr 11 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47240 * 83.23465 * 3 2 1 5 5 N 1.46498 * 109.47269 * 305.28440 * 4 3 2 6 6 C 1.34783 * 120.00124 * 302.64489 * 5 4 3 7 7 O 1.21280 * 119.99719 * 4.53729 * 6 5 4 8 8 C 1.50696 * 119.99978 * 184.53468 * 6 5 4 9 9 C 1.50696 * 109.47051 * 179.97438 * 8 6 5 10 10 C 1.37635 * 120.13259 * 265.00243 * 9 8 6 11 11 C 1.38607 * 120.25554 * 180.02562 * 10 9 8 12 12 C 1.38659 * 120.49830 * 359.97438 * 11 10 9 13 13 C 1.37602 * 120.25057 * 0.02562 * 12 11 10 14 14 C 1.40697 * 120.12760 * 85.00350 * 9 8 6 15 15 C 1.41395 * 120.24146 * 0.02562 * 14 9 8 16 16 H 1.07998 * 120.00325 * 327.84637 * 15 14 9 17 17 C 1.39954 * 119.99822 * 147.84637 * 15 14 9 18 18 N 1.30823 * 119.99795 * 356.54501 * 17 15 14 19 19 Si 1.86803 * 119.99866 * 176.54624 * 17 15 14 20 20 H 1.48498 * 109.47201 * 90.00083 * 19 17 15 21 21 H 1.48506 * 109.46806 * 209.99980 * 19 17 15 22 22 H 1.48492 * 109.47003 * 329.99582 * 19 17 15 23 23 C 1.52998 * 109.47172 * 65.28721 * 4 3 2 24 24 C 1.53003 * 109.47155 * 180.02562 * 23 4 3 25 25 C 1.53002 * 109.46698 * 299.99562 * 24 23 4 26 26 C 1.52998 * 109.46960 * 60.00319 * 25 24 23 27 27 C 1.52994 * 109.47429 * 299.99686 * 26 25 24 28 28 H 4.44645 * 5.63314 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47223 * 323.23496 * 3 2 1 30 30 H 1.08995 * 109.46949 * 203.23501 * 3 2 1 31 31 H 0.97005 * 120.00042 * 122.63651 * 5 4 3 32 32 H 1.09003 * 109.47040 * 60.00092 * 8 6 5 33 33 H 1.09002 * 109.47275 * 299.99882 * 8 6 5 34 34 H 1.08007 * 119.87112 * 359.97438 * 10 9 8 35 35 H 1.07995 * 119.75673 * 180.02562 * 11 10 9 36 36 H 1.08005 * 119.87618 * 180.02562 * 12 11 10 37 37 H 1.07994 * 120.12938 * 179.71879 * 13 12 11 38 38 H 0.96997 * 119.99641 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47099 * 299.99928 * 23 4 3 40 40 H 1.08998 * 109.47488 * 59.99842 * 23 4 3 41 41 H 1.09005 * 109.46876 * 179.97438 * 24 23 4 42 42 H 1.08998 * 109.47361 * 59.99385 * 24 23 4 43 43 H 1.08998 * 109.47070 * 300.00002 * 25 24 23 44 44 H 1.09004 * 109.46605 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47099 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.47488 * 59.99939 * 26 25 24 47 47 H 1.09007 * 109.46987 * 300.00312 * 27 26 25 48 48 H 1.09001 * 109.47610 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.1690 -1.4324 5 7 2.5672 -1.3745 -2.0210 6 6 2.7408 -2.5701 -1.4234 7 8 3.3136 -2.6372 -0.3565 8 6 2.2232 -3.8233 -2.0810 9 6 2.5443 -5.0142 -1.2152 10 6 3.6806 -5.7540 -1.4515 11 6 3.9781 -6.8501 -0.6571 12 6 3.1371 -7.2141 0.3835 13 6 1.9956 -6.4891 0.6382 14 6 1.6836 -5.3742 -0.1620 15 6 0.5131 -4.6220 0.0899 16 1 0.5003 -3.5605 -0.1081 17 6 -0.6289 -5.2533 0.5960 18 7 -0.6358 -6.5495 0.7723 19 14 -2.1431 -4.2448 1.0197 20 1 -3.0254 -4.1522 -0.1712 21 1 -2.8789 -4.8996 2.1311 22 1 -1.7289 -2.8810 1.4362 23 6 2.7570 1.0517 -2.2639 24 6 3.2665 0.8817 -3.6966 25 6 4.7908 0.7499 -3.6833 26 6 5.1899 -0.4709 -2.8518 27 6 4.6803 -0.3010 -1.4193 28 1 -1.0500 0.0002 0.0000 29 1 3.0097 -0.8224 0.6151 30 1 3.0088 0.9451 0.4054 31 1 2.0522 -1.3122 -2.8407 32 1 2.6968 -3.9446 -3.0552 33 1 1.1434 -3.7472 -2.2088 34 1 4.3426 -5.4798 -2.2597 35 1 4.8721 -7.4247 -0.8495 36 1 3.3789 -8.0698 0.9965 37 1 1.3397 -6.7770 1.4464 38 1 -1.4275 -6.9870 1.1227 39 1 1.6710 1.1454 -2.2737 40 1 3.1951 1.9486 -1.8261 41 1 2.9818 1.7512 -4.2890 42 1 2.8281 -0.0152 -4.1342 43 1 5.2292 1.6467 -3.2457 44 1 5.1539 0.6292 -4.7040 45 1 6.2758 -0.5650 -2.8428 46 1 4.7515 -1.3677 -3.2894 47 1 5.1188 0.5959 -0.9817 48 1 4.9650 -1.1704 -0.8268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886654642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:30:58 Heat of formation + Delta-G solvation = 13.224721 kcal Electronic energy + Delta-G solvation = -28585.178371 eV Core-core repulsion = 24991.062029 eV Total energy + Delta-G solvation = -3594.116342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40745 -38.11643 -36.91920 -34.38652 -33.49954 -32.71912 -31.68192 -30.84084 -30.25671 -29.34778 -26.74515 -26.53989 -24.90288 -22.78721 -21.82430 -20.89688 -20.78687 -19.33181 -18.86049 -17.72494 -17.11019 -16.62423 -15.68598 -15.38174 -15.15658 -14.73725 -14.41496 -14.11460 -14.00989 -13.68513 -13.62006 -13.35278 -13.12552 -12.62805 -12.50815 -12.43513 -12.31061 -12.20399 -11.81769 -11.64196 -11.49084 -11.22671 -11.07318 -10.94291 -10.91843 -10.66943 -10.58571 -10.47494 -10.30860 -10.26184 -9.82314 -9.78002 -9.44947 -9.32085 -9.12830 -8.80967 -8.54567 -7.24648 -7.14037 -6.57393 -4.29787 2.84009 3.02933 3.10556 3.15754 3.16542 3.24518 3.29912 3.44251 3.73618 4.01697 4.52442 4.67614 4.70184 4.77810 4.81294 5.09137 5.24286 5.30782 5.39772 5.46292 5.54712 5.64111 5.66589 5.76470 5.85224 5.88549 5.96323 6.02867 6.05595 6.10663 6.15817 6.20476 6.28170 6.32662 6.35048 6.42555 6.45468 6.49512 6.56024 6.85755 7.00007 7.19594 7.36583 7.49863 7.72823 7.96419 8.00437 8.07224 8.18326 8.18778 8.39804 8.74227 8.98756 9.01638 9.08868 10.35121 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.005013 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.741280 B = 5583.851572 C = 7273.217206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.162 4.162 3 C -0.031 4.031 4 C 0.192 3.808 5 N -0.731 5.731 6 C 0.522 3.478 7 O -0.519 6.519 8 C -0.073 4.073 9 C -0.170 4.170 10 C -0.087 4.087 11 C -0.232 4.232 12 C -0.113 4.113 13 C -0.150 4.150 14 C 0.126 3.874 15 C -0.454 4.454 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.810 5.810 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.261 1.261 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.128 4.128 28 H 0.209 0.791 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.394 0.606 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.276 0.724 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 14.186 -7.778 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.162 4.162 3 C -0.068 4.068 4 C 0.106 3.894 5 N -0.386 5.386 6 C 0.310 3.690 7 O -0.393 6.393 8 C -0.113 4.113 9 C -0.171 4.171 10 C -0.106 4.106 11 C -0.251 4.251 12 C -0.131 4.131 13 C -0.169 4.169 14 C 0.124 3.876 15 C -0.485 4.485 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.438 5.438 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.185 1.185 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.167 4.167 28 H 0.226 0.774 29 H 0.134 0.866 30 H 0.100 0.900 31 H 0.228 0.772 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.883 13.940 -6.908 16.306 hybrid contribution -1.303 0.342 -0.155 1.356 sum 3.581 14.281 -7.064 16.330 Atomic orbital electron populations 1.24697 0.95781 1.02250 1.01345 1.22808 0.94144 0.99446 0.99832 1.19329 0.85433 1.03964 0.98106 1.20089 0.92712 0.85097 0.91516 1.46197 1.56666 1.06573 1.29139 1.21035 0.78490 0.84240 0.85241 1.90588 1.41351 1.86426 1.20915 1.20277 1.02363 0.91025 0.97637 1.19135 0.99477 0.98731 0.99805 1.20289 0.95851 0.95980 0.98453 1.20335 1.01374 1.01542 1.01856 1.20716 0.95974 0.98834 0.97615 1.21453 0.96067 0.98264 1.01148 1.17363 0.90818 0.91278 0.88146 1.19458 0.95405 0.95885 1.37721 0.90825 1.25836 1.00381 0.94868 0.93123 1.69774 1.29597 1.09294 1.35095 0.86381 0.81040 0.81036 0.78731 1.19656 1.20341 1.18489 1.21837 1.01482 0.97162 0.95387 1.21531 0.96053 1.01698 0.96354 1.21540 0.95677 0.98531 0.99794 1.21456 1.00178 0.98257 0.95365 1.21908 0.93968 1.03263 0.97532 0.77361 0.86579 0.89966 0.77229 0.90890 0.88819 0.89850 0.89738 0.89640 0.86006 0.91281 0.91215 0.90742 0.92019 0.91840 0.92201 0.92298 0.92258 0.91676 0.91586 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.53 19.25 29.55 0.57 -2.96 16 2 C -0.16 -2.63 11.71 -37.12 -0.43 -3.07 16 3 C -0.03 -0.46 4.41 -29.52 -0.13 -0.59 16 4 C 0.19 2.43 0.34 -131.82 -0.05 2.39 16 5 N -0.73 -10.39 3.49 -47.61 -0.17 -10.56 16 6 C 0.52 9.74 6.80 -10.98 -0.07 9.67 16 7 O -0.52 -11.56 12.35 5.56 0.07 -11.49 16 8 C -0.07 -1.43 5.20 -29.04 -0.15 -1.58 16 9 C -0.17 -4.08 4.43 -103.92 -0.46 -4.54 16 10 C -0.09 -2.02 9.66 -39.67 -0.38 -2.40 16 11 C -0.23 -5.42 10.05 -39.29 -0.39 -5.82 16 12 C -0.11 -2.78 10.02 -39.66 -0.40 -3.18 16 13 C -0.15 -4.06 8.66 -38.87 -0.34 -4.39 16 14 C 0.13 3.39 5.54 -106.82 -0.59 2.80 16 15 C -0.45 -12.10 8.00 -37.74 -0.30 -12.40 16 16 H 0.07 1.95 6.87 -52.49 -0.36 1.59 16 17 C 0.07 1.87 5.35 -17.34 -0.09 1.78 16 18 N -0.81 -21.41 10.71 55.55 0.60 -20.81 16 19 Si 0.90 19.35 29.56 -169.99 -5.03 14.32 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.12 -1.20 4.60 -26.73 -0.12 -1.33 16 24 C -0.12 -1.03 5.75 -26.73 -0.15 -1.18 16 25 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 26 C -0.11 -1.24 5.76 -26.74 -0.15 -1.39 16 27 C -0.13 -1.58 4.56 -26.73 -0.12 -1.70 16 28 H 0.21 2.74 7.80 -54.09 -0.42 2.32 16 29 H 0.12 2.10 6.04 -51.93 -0.31 1.78 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.39 4.77 7.24 -40.82 -0.30 4.47 16 32 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 33 H 0.09 1.85 7.17 -51.93 -0.37 1.48 16 34 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.12 3.42 6.20 -52.49 -0.33 3.09 16 38 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 39 H 0.07 0.74 7.39 -51.93 -0.38 0.35 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.56 6.81 -51.93 -0.35 0.21 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.78 7.60 -51.93 -0.39 0.39 16 47 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 48 H 0.08 1.32 6.52 -51.93 -0.34 0.98 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -30.38 380.63 -10.07 -40.45 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -7.34 Total: 13.44 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: -3.94 Total: -31.09 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.43 Total: -31.37 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.38 -10.07 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886654642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.678 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds