Wall clock time and date at job start Sat Apr 11 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47240 * 83.23465 * 3 2 1 5 5 N 1.46498 * 109.47269 * 305.28440 * 4 3 2 6 6 C 1.34783 * 120.00124 * 302.64489 * 5 4 3 7 7 O 1.21280 * 119.99719 * 4.53729 * 6 5 4 8 8 C 1.50696 * 119.99978 * 184.53468 * 6 5 4 9 9 C 1.50696 * 109.47051 * 179.97438 * 8 6 5 10 10 C 1.37635 * 120.13259 * 265.00243 * 9 8 6 11 11 C 1.38607 * 120.25554 * 180.02562 * 10 9 8 12 12 C 1.38659 * 120.49830 * 359.97438 * 11 10 9 13 13 C 1.37602 * 120.25057 * 0.02562 * 12 11 10 14 14 C 1.40697 * 120.12760 * 85.00350 * 9 8 6 15 15 C 1.41395 * 120.24146 * 0.02562 * 14 9 8 16 16 H 1.07998 * 120.00325 * 327.84637 * 15 14 9 17 17 C 1.39954 * 119.99822 * 147.84637 * 15 14 9 18 18 N 1.30823 * 119.99795 * 356.54501 * 17 15 14 19 19 Si 1.86803 * 119.99866 * 176.54624 * 17 15 14 20 20 H 1.48498 * 109.47201 * 90.00083 * 19 17 15 21 21 H 1.48506 * 109.46806 * 209.99980 * 19 17 15 22 22 H 1.48492 * 109.47003 * 329.99582 * 19 17 15 23 23 C 1.52998 * 109.47172 * 65.28721 * 4 3 2 24 24 C 1.53003 * 109.47155 * 180.02562 * 23 4 3 25 25 C 1.53002 * 109.46698 * 299.99562 * 24 23 4 26 26 C 1.52998 * 109.46960 * 60.00319 * 25 24 23 27 27 C 1.52994 * 109.47429 * 299.99686 * 26 25 24 28 28 H 4.44645 * 5.63314 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47223 * 323.23496 * 3 2 1 30 30 H 1.08995 * 109.46949 * 203.23501 * 3 2 1 31 31 H 0.97005 * 120.00042 * 122.63651 * 5 4 3 32 32 H 1.09003 * 109.47040 * 60.00092 * 8 6 5 33 33 H 1.09002 * 109.47275 * 299.99882 * 8 6 5 34 34 H 1.08007 * 119.87112 * 359.97438 * 10 9 8 35 35 H 1.07995 * 119.75673 * 180.02562 * 11 10 9 36 36 H 1.08005 * 119.87618 * 180.02562 * 12 11 10 37 37 H 1.07994 * 120.12938 * 179.71879 * 13 12 11 38 38 H 0.96997 * 119.99641 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47099 * 299.99928 * 23 4 3 40 40 H 1.08998 * 109.47488 * 59.99842 * 23 4 3 41 41 H 1.09005 * 109.46876 * 179.97438 * 24 23 4 42 42 H 1.08998 * 109.47361 * 59.99385 * 24 23 4 43 43 H 1.08998 * 109.47070 * 300.00002 * 25 24 23 44 44 H 1.09004 * 109.46605 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47099 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.47488 * 59.99939 * 26 25 24 47 47 H 1.09007 * 109.46987 * 300.00312 * 27 26 25 48 48 H 1.09001 * 109.47610 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.1690 -1.4324 5 7 2.5672 -1.3745 -2.0210 6 6 2.7408 -2.5701 -1.4234 7 8 3.3136 -2.6372 -0.3565 8 6 2.2232 -3.8233 -2.0810 9 6 2.5443 -5.0142 -1.2152 10 6 3.6806 -5.7540 -1.4515 11 6 3.9781 -6.8501 -0.6571 12 6 3.1371 -7.2141 0.3835 13 6 1.9956 -6.4891 0.6382 14 6 1.6836 -5.3742 -0.1620 15 6 0.5131 -4.6220 0.0899 16 1 0.5003 -3.5605 -0.1081 17 6 -0.6289 -5.2533 0.5960 18 7 -0.6358 -6.5495 0.7723 19 14 -2.1431 -4.2448 1.0197 20 1 -3.0254 -4.1522 -0.1712 21 1 -2.8789 -4.8996 2.1311 22 1 -1.7289 -2.8810 1.4362 23 6 2.7570 1.0517 -2.2639 24 6 3.2665 0.8817 -3.6966 25 6 4.7908 0.7499 -3.6833 26 6 5.1899 -0.4709 -2.8518 27 6 4.6803 -0.3010 -1.4193 28 1 -1.0500 0.0002 0.0000 29 1 3.0097 -0.8224 0.6151 30 1 3.0088 0.9451 0.4054 31 1 2.0522 -1.3122 -2.8407 32 1 2.6968 -3.9446 -3.0552 33 1 1.1434 -3.7472 -2.2088 34 1 4.3426 -5.4798 -2.2597 35 1 4.8721 -7.4247 -0.8495 36 1 3.3789 -8.0698 0.9965 37 1 1.3397 -6.7770 1.4464 38 1 -1.4275 -6.9870 1.1227 39 1 1.6710 1.1454 -2.2737 40 1 3.1951 1.9486 -1.8261 41 1 2.9818 1.7512 -4.2890 42 1 2.8281 -0.0152 -4.1342 43 1 5.2292 1.6467 -3.2457 44 1 5.1539 0.6292 -4.7040 45 1 6.2758 -0.5650 -2.8428 46 1 4.7515 -1.3677 -3.2894 47 1 5.1188 0.5959 -0.9817 48 1 4.9650 -1.1704 -0.8268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886654642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:30:56 Heat of formation + Delta-G solvation = -1.139105 kcal Electronic energy + Delta-G solvation = -28585.801234 eV Core-core repulsion = 24991.062029 eV Total energy + Delta-G solvation = -3594.739204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.59582 -39.69596 -38.45479 -35.46750 -35.41423 -34.06665 -33.28785 -31.72414 -31.47814 -31.25395 -28.37993 -27.64335 -26.80444 -23.64589 -22.99925 -22.74896 -22.04572 -20.96897 -19.95903 -19.03339 -18.90771 -17.97112 -17.22625 -16.80586 -16.30850 -16.13812 -16.03229 -15.41821 -15.31364 -15.02744 -14.87985 -14.73381 -14.46467 -14.34227 -13.90192 -13.60901 -13.37925 -13.33805 -13.14453 -13.05344 -12.85338 -12.79167 -12.77761 -12.52388 -12.45245 -12.10771 -11.96760 -11.47657 -11.41415 -11.33099 -11.23600 -11.20645 -11.03552 -10.99830 -10.89942 -10.24223 -9.80148 -9.16035 -9.08709 -8.49068 -6.30561 1.00580 1.15557 1.34011 1.46684 1.50503 1.91305 1.97949 2.00567 2.21938 2.46954 2.84588 3.48077 3.72465 3.82283 3.84733 3.95578 4.19742 4.24961 4.35889 4.40089 4.43333 4.55332 4.62804 4.63174 4.64327 4.69295 4.72484 4.80260 4.81873 4.87869 5.01395 5.07673 5.12357 5.19896 5.20628 5.23834 5.28559 5.33955 5.40407 5.41207 5.49490 5.56792 5.57080 5.81130 5.83180 6.05657 6.21111 6.22164 6.45353 6.74849 6.77839 6.84487 7.03948 7.13684 7.59753 8.45116 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.005013 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.741280 B = 5583.851572 C = 7273.217206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.185 4.185 3 C -0.033 4.033 4 C 0.193 3.807 5 N -0.713 5.713 6 C 0.525 3.475 7 O -0.561 6.561 8 C -0.074 4.074 9 C -0.173 4.173 10 C -0.097 4.097 11 C -0.232 4.232 12 C -0.124 4.124 13 C -0.184 4.184 14 C 0.093 3.907 15 C -0.476 4.476 16 H 0.066 0.934 17 C 0.030 3.970 18 N -0.842 5.842 19 Si 0.969 3.031 20 H -0.256 1.256 21 H -0.272 1.272 22 H -0.263 1.263 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.113 4.113 27 C -0.125 4.125 28 H 0.230 0.770 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.406 0.594 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.281 0.719 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.085 0.915 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.884 16.490 -9.973 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.185 4.185 3 C -0.070 4.070 4 C 0.107 3.893 5 N -0.367 5.367 6 C 0.313 3.687 7 O -0.438 6.438 8 C -0.114 4.114 9 C -0.175 4.175 10 C -0.115 4.115 11 C -0.251 4.251 12 C -0.142 4.142 13 C -0.203 4.203 14 C 0.091 3.909 15 C -0.507 4.507 16 H 0.084 0.916 17 C -0.181 4.181 18 N -0.470 5.470 19 Si 0.791 3.209 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.187 1.187 23 C -0.151 4.151 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.163 4.163 28 H 0.247 0.753 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.242 0.758 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.163 16.262 -9.147 19.359 hybrid contribution -1.275 -0.402 0.519 1.434 sum 3.888 15.860 -8.627 18.468 Atomic orbital electron populations 1.25361 0.96661 1.01778 1.00950 1.23282 0.94934 0.99934 1.00311 1.19365 0.84891 1.03711 0.99069 1.20257 0.92838 0.85388 0.90844 1.46003 1.55744 1.05918 1.29006 1.20779 0.78097 0.85165 0.84665 1.90594 1.43478 1.87112 1.22655 1.20296 1.02445 0.90182 0.98441 1.19596 0.98927 0.99764 0.99180 1.20717 0.95957 0.95603 0.99220 1.20748 1.01850 1.01629 1.00868 1.20975 0.95508 0.99243 0.98464 1.21436 0.97259 0.99963 1.01667 1.17735 0.91941 0.91835 0.89382 1.19530 0.96264 0.95520 1.39372 0.91585 1.26631 1.03052 0.95836 0.92610 1.69864 1.30611 1.10684 1.35822 0.85384 0.77439 0.79097 0.79000 1.18050 1.19703 1.18701 1.21800 1.01410 0.95965 0.95881 1.21544 0.95911 1.02542 0.95410 1.21511 0.95734 0.97680 1.00031 1.21440 1.00296 0.98900 0.94412 1.21854 0.93699 1.02462 0.98309 0.75314 0.90416 0.87416 0.75771 0.87519 0.89311 0.86626 0.86646 0.87790 0.88241 0.90834 0.91588 0.89010 0.90006 0.92087 0.91000 0.91101 0.91881 0.93144 0.89663 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.08 19.25 74.32 1.43 -5.65 16 2 C -0.18 -5.92 11.71 31.12 0.36 -5.56 16 3 C -0.03 -0.97 4.41 28.79 0.13 -0.84 16 4 C 0.19 4.64 0.34 3.60 0.00 4.64 16 5 N -0.71 -19.66 3.49 -422.92 -1.47 -21.14 16 6 C 0.53 19.72 6.80 87.65 0.60 20.32 16 7 O -0.56 -25.89 12.35 -3.03 -0.04 -25.93 16 8 C -0.07 -2.87 5.20 29.10 0.15 -2.72 16 9 C -0.17 -8.40 4.43 -19.41 -0.09 -8.48 16 10 C -0.10 -4.39 9.66 22.22 0.21 -4.17 16 11 C -0.23 -10.65 10.05 22.46 0.23 -10.43 16 12 C -0.12 -6.20 10.02 22.22 0.22 -5.97 16 13 C -0.18 -10.39 8.66 22.73 0.20 -10.19 16 14 C 0.09 5.19 5.54 -21.29 -0.12 5.07 16 15 C -0.48 -26.34 8.00 23.46 0.19 -26.15 16 16 H 0.07 3.63 6.87 -2.91 -0.02 3.61 16 17 C 0.03 1.61 5.35 85.26 0.46 2.06 16 18 N -0.84 -46.14 10.71 21.83 0.23 -45.91 16 19 Si 0.97 40.34 29.56 68.60 2.03 42.36 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 23 C -0.11 -1.92 4.60 30.59 0.14 -1.78 16 24 C -0.12 -1.59 5.75 30.60 0.18 -1.41 16 25 C -0.11 -1.55 5.92 30.59 0.18 -1.37 16 26 C -0.11 -2.20 5.76 30.59 0.18 -2.03 16 27 C -0.12 -2.94 4.56 30.59 0.14 -2.80 16 28 H 0.23 5.66 7.80 -4.42 -0.03 5.62 16 29 H 0.08 2.95 6.04 -2.39 -0.01 2.93 16 30 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.41 9.15 7.24 -92.70 -0.67 8.48 16 32 H 0.11 3.33 8.05 -2.39 -0.02 3.31 16 33 H 0.09 3.53 7.17 -2.39 -0.02 3.51 16 34 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 35 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 37 H 0.10 5.94 6.20 -2.91 -0.02 5.93 16 38 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 39 H 0.07 1.21 7.39 -2.39 -0.02 1.19 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.06 0.87 6.81 -2.39 -0.02 0.86 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.05 1.12 7.60 -2.39 -0.02 1.11 16 47 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.05 1.49 6.52 -2.39 -0.02 1.48 16 Total: -1.00 -69.62 380.63 5.82 -63.80 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: 0.28 Total: 44.28 kcal Atomic # 6 Polarization: -62.26 SS G_CDS: 4.78 Total: -57.47 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -1.24 Total: -67.04 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.04 Total: -25.93 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Total: -69.62 5.82 -63.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886654642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.661 kcal (2) G-P(sol) polarization free energy of solvation -69.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds