Wall clock time and date at job start Sat Apr 11 2020 01:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46774 * 2 1 4 4 C 1.52997 * 109.47186 * 119.99880 * 2 1 3 5 5 N 1.46906 * 109.47138 * 64.11329 * 4 2 1 6 6 C 1.46894 * 110.99888 * 199.91811 * 5 4 2 7 7 C 1.50700 * 109.47571 * 71.21724 * 6 5 4 8 8 H 1.08007 * 119.99283 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00295 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99826 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99975 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47198 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46962 * 120.00075 * 11 9 7 14 14 H 1.48500 * 109.47414 * 240.00065 * 11 9 7 15 15 C 1.46904 * 111.00136 * 75.95981 * 5 4 2 16 16 C 1.52999 * 109.46829 * 201.53639 * 15 5 4 17 17 H 1.09001 * 109.47300 * 53.49676 * 16 15 5 18 18 O 1.42889 * 109.47256 * 293.49297 * 16 15 5 19 19 C 1.53003 * 109.46535 * 173.49278 * 16 15 5 20 20 O 1.42907 * 109.46750 * 184.99752 * 19 16 15 21 21 C 1.35954 * 116.99793 * 179.97438 * 20 19 16 22 22 C 1.38659 * 120.06569 * 0.02562 * 21 20 19 23 23 C 1.38182 * 119.97198 * 179.97438 * 22 21 20 24 24 C 1.38263 * 120.09490 * 0.02703 * 23 22 21 25 25 C 1.38261 * 120.12334 * 359.97438 * 24 23 22 26 26 C 1.38331 * 120.03110 * 359.70312 * 25 24 23 27 27 F 1.35098 * 120.04943 * 180.27416 * 26 25 24 28 28 H 1.08994 * 109.47121 * 299.99712 * 1 2 3 29 29 H 1.08997 * 109.47490 * 60.00039 * 1 2 3 30 30 H 1.09001 * 109.46536 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47267 * 240.00510 * 2 1 3 32 32 H 1.09005 * 109.46914 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47081 * 299.99725 * 3 2 1 34 34 H 1.08994 * 109.47061 * 60.00251 * 3 2 1 35 35 H 1.08997 * 109.47575 * 304.11031 * 4 2 1 36 36 H 1.09007 * 109.46811 * 184.10801 * 4 2 1 37 37 H 1.09001 * 109.47102 * 191.21381 * 6 5 4 38 38 H 1.09007 * 109.47154 * 311.21255 * 6 5 4 39 39 H 0.96998 * 119.99260 * 179.97438 * 10 9 7 40 40 H 1.09003 * 109.47027 * 81.53544 * 15 5 4 41 41 H 1.09000 * 109.47075 * 321.53908 * 15 5 4 42 42 H 0.96701 * 114.00549 * 299.99903 * 18 16 15 43 43 H 1.08995 * 109.47604 * 304.99656 * 19 16 15 44 44 H 1.08997 * 109.46870 * 65.00398 * 19 16 15 45 45 H 1.08001 * 120.01231 * 0.02562 * 22 21 20 46 46 H 1.07998 * 119.95255 * 180.02562 * 23 22 21 47 47 H 1.07994 * 119.93537 * 179.97438 * 24 23 22 48 48 H 1.08002 * 119.98341 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6331 -2.1320 1.2006 6 6 1.6732 -2.7377 2.5382 7 6 0.5478 -2.1847 3.3742 8 1 -0.1292 -1.4557 2.9538 9 6 0.3831 -2.6086 4.6758 10 7 1.2079 -3.4959 5.1877 11 14 -1.0114 -1.9225 5.7121 12 1 -1.7917 -0.9473 4.9087 13 1 -1.8999 -3.0316 6.1428 14 1 -0.4516 -1.2437 6.9083 15 6 2.4656 -2.8877 0.2552 16 6 1.7237 -4.1536 -0.1785 17 1 0.7365 -3.8852 -0.5549 18 8 1.5845 -5.0311 0.9405 19 6 2.5166 -4.8563 -1.2824 20 8 1.7691 -5.9732 -1.7684 21 6 2.3359 -6.7107 -2.7599 22 6 3.5850 -6.3670 -3.2541 23 6 4.1594 -7.1182 -4.2616 24 6 3.4902 -8.2122 -4.7783 25 6 2.2445 -8.5585 -4.2885 26 6 1.6675 -7.8140 -3.2754 27 9 0.4527 -8.1553 -2.7927 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6178 -0.2517 2.1377 36 1 3.1276 -0.6578 1.2867 37 1 1.5636 -3.8187 2.4510 38 1 2.6265 -2.5064 3.0135 39 1 1.0922 -3.7938 6.1035 40 1 3.4037 -3.1634 0.7370 41 1 2.6738 -2.2710 -0.6191 42 1 2.4252 -5.3116 1.3274 43 1 2.6993 -4.1583 -2.0993 44 1 3.4687 -5.2034 -0.8811 45 1 4.1090 -5.5129 -2.8512 46 1 5.1325 -6.8505 -4.6460 47 1 3.9414 -8.7973 -5.5659 48 1 1.7235 -9.4132 -4.6940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916646548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:09 Heat of formation + Delta-G solvation = -132.047402 kcal Electronic energy + Delta-G solvation = -28035.720955 eV Core-core repulsion = 24004.535916 eV Total energy + Delta-G solvation = -4031.185039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.82304 -41.11511 -39.72090 -38.46715 -37.35449 -35.38002 -34.26521 -32.12931 -31.63857 -30.59113 -28.97928 -27.85935 -27.37544 -25.62587 -24.02553 -23.40388 -22.61745 -22.20368 -20.65069 -19.40012 -18.49359 -18.22116 -17.75917 -17.63489 -17.13457 -16.84049 -16.56720 -16.39105 -15.87987 -15.73739 -15.51679 -15.34146 -15.01051 -14.93943 -14.53310 -14.22520 -14.17823 -13.75991 -13.38917 -13.35838 -13.24803 -13.01398 -12.88533 -12.73814 -12.69697 -12.57434 -12.42739 -12.27405 -12.02143 -12.00025 -11.79992 -11.70694 -11.56244 -11.47633 -11.05683 -10.76250 -10.32741 -9.93485 -9.20960 -8.88458 -8.13439 -6.18414 0.13805 0.28469 1.37505 1.39827 1.51555 1.96218 2.42748 2.62328 3.19132 3.20963 3.33285 3.48559 3.72088 3.85274 3.95972 4.00851 4.06753 4.13591 4.23170 4.25633 4.30065 4.33539 4.37322 4.48197 4.53100 4.60305 4.75020 4.89167 4.92878 4.99356 5.00661 5.08184 5.11397 5.13375 5.18131 5.27286 5.28913 5.38523 5.43519 5.55359 5.57478 5.67617 5.72636 5.74232 6.21061 6.31293 6.50274 6.74339 6.84050 6.97429 7.48135 8.97187 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.003017 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.829651 B = 9278.014537 C =10675.577533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.141 4.141 4 C 0.066 3.934 5 N -0.534 5.534 6 C 0.192 3.808 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.956 3.044 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.279 1.279 15 C 0.033 3.967 16 C 0.121 3.879 17 H 0.089 0.911 18 O -0.563 6.563 19 C 0.037 3.963 20 O -0.328 6.328 21 C 0.075 3.925 22 C -0.188 4.188 23 C -0.083 4.083 24 C -0.127 4.127 25 C -0.117 4.117 26 C 0.024 3.976 27 F -0.156 7.156 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.023 0.977 37 H 0.052 0.948 38 H -0.049 1.049 39 H 0.260 0.740 40 H 0.036 0.964 41 H 0.103 0.897 42 H 0.376 0.624 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.155 0.845 46 H 0.166 0.834 47 H 0.168 0.832 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.825 -2.854 -22.946 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 C -0.198 4.198 4 C -0.062 4.062 5 N -0.258 5.258 6 C 0.066 3.934 7 C -0.547 4.547 8 H 0.071 0.929 9 C -0.197 4.197 10 N -0.574 5.574 11 Si 0.782 3.218 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.204 1.204 15 C -0.096 4.096 16 C 0.061 3.939 17 H 0.107 0.893 18 O -0.369 6.369 19 C -0.038 4.038 20 O -0.242 6.242 21 C 0.029 3.971 22 C -0.207 4.207 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.136 4.136 26 C 0.004 3.996 27 F -0.135 7.135 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.070 0.930 38 H -0.031 1.031 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.121 0.879 42 H 0.224 0.776 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.173 0.827 46 H 0.184 0.816 47 H 0.186 0.814 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.502 -2.896 -22.951 24.646 hybrid contribution 0.341 0.102 1.867 1.900 sum 8.842 -2.794 -21.084 23.033 Atomic orbital electron populations 1.21623 0.95507 1.01276 1.00389 1.21078 0.96060 0.96050 0.96923 1.21781 1.01033 0.95003 1.02019 1.22108 0.96355 0.88977 0.98716 1.61884 1.52408 1.01787 1.09692 1.19819 0.92763 0.96932 0.83916 1.21489 1.13205 1.23388 0.96624 0.92912 1.25758 0.98845 0.95800 0.99267 1.70071 1.39139 1.32794 1.15364 0.85529 0.79446 0.78247 0.78577 1.19160 1.20875 1.20431 1.22624 0.93930 0.95338 0.97729 1.21889 1.00010 0.87867 0.84155 0.89258 1.86749 1.35739 1.66958 1.47425 1.23678 0.95190 0.86996 0.97947 1.86199 1.46449 1.41693 1.49831 1.19468 0.94277 0.92372 0.91008 1.21507 0.93804 1.04068 1.01288 1.21501 1.00888 0.93621 0.94027 1.21384 0.93489 0.98183 1.01420 1.21355 0.97397 1.00096 0.94725 1.17650 0.83337 0.97816 1.00795 1.91448 1.42310 1.91954 1.87768 0.94808 0.91844 0.93690 0.90464 0.92201 0.91024 0.93607 0.93205 0.95848 0.93040 1.03101 0.93136 0.94610 0.87874 0.77601 0.88287 0.89863 0.82721 0.81602 0.81410 0.82439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.07 71.98 0.65 -3.37 16 2 C -0.08 -2.32 2.96 -10.79 -0.03 -2.35 16 3 C -0.14 -3.22 9.19 71.98 0.66 -2.56 16 4 C 0.07 2.44 4.19 86.30 0.36 2.80 16 5 N -0.53 -21.87 3.72 -900.77 -3.35 -25.22 16 6 C 0.19 10.04 4.51 85.56 0.39 10.42 16 7 C -0.51 -29.49 8.32 25.60 0.21 -29.28 16 8 H 0.05 3.07 7.66 -2.91 -0.02 3.05 16 9 C 0.00 0.03 5.46 84.65 0.46 0.49 16 10 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 11 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 C 0.03 1.01 4.61 86.30 0.40 1.41 16 16 C 0.12 3.86 3.47 30.60 0.11 3.97 16 17 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 18 O -0.56 -22.46 10.56 -144.34 -1.52 -23.99 16 19 C 0.04 0.88 4.37 71.98 0.31 1.20 16 20 O -0.33 -10.05 9.97 -88.39 -0.88 -10.93 16 21 C 0.07 1.92 6.69 22.53 0.15 2.07 16 22 C -0.19 -3.27 9.04 22.36 0.20 -3.07 16 23 C -0.08 -1.00 10.04 22.26 0.22 -0.77 16 24 C -0.13 -1.52 10.04 22.28 0.22 -1.30 16 25 C -0.12 -2.06 10.02 22.30 0.22 -1.84 16 26 C 0.02 0.62 7.31 22.45 0.16 0.78 16 27 F -0.16 -5.02 17.11 44.97 0.77 -4.25 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 1.60 7.73 -2.39 -0.02 1.58 16 31 H 0.08 1.91 6.70 -2.39 -0.02 1.89 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 2.16 6.98 -2.39 -0.02 2.15 16 36 H 0.02 0.81 8.00 -2.38 -0.02 0.79 16 37 H 0.05 2.87 4.94 -2.39 -0.01 2.86 16 38 H -0.05 -2.78 8.06 -2.38 -0.02 -2.80 16 39 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.04 1.10 7.97 -2.39 -0.02 1.08 16 41 H 0.10 2.49 6.45 -2.39 -0.02 2.48 16 42 H 0.38 12.82 8.87 -74.06 -0.66 12.16 16 43 H 0.10 1.74 7.66 -2.39 -0.02 1.72 16 44 H 0.08 1.65 7.66 -2.39 -0.02 1.63 16 45 H 0.16 2.01 6.30 -2.91 -0.02 1.99 16 46 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 47 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 48 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -75.61 391.13 2.33 -73.27 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.29 Total: 21.11 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.71 Total: -21.38 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -3.06 Total: -82.20 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -2.41 Total: -34.92 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.77 Total: -4.25 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -75.61 2.33 -73.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916646548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.773 kcal (2) G-P(sol) polarization free energy of solvation -75.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds