Wall clock time and date at job start Sat Apr 11 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 C 1.53003 * 109.47506 * 120.00346 * 2 1 3 5 5 N 1.46899 * 109.47242 * 181.08838 * 4 2 1 6 6 C 1.46899 * 110.99707 * 158.53554 * 5 4 2 7 7 C 1.50704 * 109.47096 * 288.18141 * 6 5 4 8 8 H 1.07998 * 120.00044 * 4.80120 * 7 6 5 9 9 C 1.37877 * 119.99793 * 184.81208 * 7 6 5 10 10 N 1.31508 * 120.00283 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99596 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47498 * 59.99539 * 11 9 7 13 13 H 1.48504 * 109.46855 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47127 * 299.99210 * 11 9 7 15 15 C 1.46896 * 110.99933 * 282.48613 * 5 4 2 16 16 C 1.53001 * 109.47039 * 90.16763 * 15 5 4 17 17 H 1.09005 * 109.47066 * 300.69090 * 16 15 5 18 18 O 1.42895 * 109.47031 * 60.69596 * 16 15 5 19 19 C 1.53000 * 109.46941 * 180.69599 * 16 15 5 20 20 O 1.42905 * 109.47315 * 174.99958 * 19 16 15 21 21 C 1.35955 * 117.00430 * 179.97438 * 20 19 16 22 22 C 1.38662 * 120.06061 * 0.02562 * 21 20 19 23 23 C 1.38177 * 119.96592 * 179.97438 * 22 21 20 24 24 C 1.38262 * 120.09608 * 0.02562 * 23 22 21 25 25 C 1.38248 * 120.12593 * 0.02562 * 24 23 22 26 26 C 1.38335 * 120.03142 * 359.70002 * 25 24 23 27 27 F 1.35102 * 120.04871 * 180.27592 * 26 25 24 28 28 H 1.08998 * 109.47617 * 299.99590 * 1 2 3 29 29 H 1.09004 * 109.47206 * 59.99953 * 1 2 3 30 30 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47201 * 240.00226 * 2 1 3 32 32 H 1.08999 * 109.47747 * 184.51335 * 3 2 1 33 33 H 1.09001 * 109.47546 * 304.51489 * 3 2 1 34 34 H 1.09004 * 109.46742 * 64.51833 * 3 2 1 35 35 H 1.08997 * 109.46940 * 61.08181 * 4 2 1 36 36 H 1.08998 * 109.46342 * 301.08869 * 4 2 1 37 37 H 1.09001 * 109.47277 * 48.17891 * 6 5 4 38 38 H 1.08995 * 109.47036 * 168.18076 * 6 5 4 39 39 H 0.97004 * 120.00309 * 180.02562 * 10 9 7 40 40 H 1.09002 * 109.47637 * 330.16673 * 15 5 4 41 41 H 1.09002 * 109.47209 * 210.16780 * 15 5 4 42 42 H 0.96701 * 114.00516 * 59.99952 * 18 16 15 43 43 H 1.09002 * 109.47612 * 294.99731 * 19 16 15 44 44 H 1.08999 * 109.47504 * 55.00211 * 19 16 15 45 45 H 1.07997 * 120.01561 * 359.97438 * 22 21 20 46 46 H 1.08004 * 119.94767 * 179.97438 * 23 22 21 47 47 H 1.07997 * 119.93260 * 179.97438 * 24 23 22 48 48 H 1.08009 * 119.98505 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5088 -0.6985 1.2624 6 6 4.0262 -0.9027 2.6220 7 6 3.7658 0.3300 3.4489 8 1 3.1981 1.1492 3.0330 9 6 4.2524 0.4119 4.7363 10 7 4.9434 -0.5858 5.2429 11 14 3.9301 1.9401 5.7611 12 1 2.4658 2.1312 5.9181 13 1 4.5542 1.7796 7.0990 14 1 4.5137 3.1242 5.0810 15 6 4.0591 -1.6956 0.3345 16 6 4.2483 -1.0595 -1.0441 17 1 3.2883 -0.6969 -1.4118 18 8 5.1633 0.0333 -0.9429 19 6 4.8052 -2.1027 -2.0150 20 8 4.8725 -1.5433 -3.3282 21 6 5.3496 -2.3452 -4.3171 22 6 5.7439 -3.6431 -4.0294 23 6 6.2279 -4.4565 -5.0360 24 6 6.3202 -3.9781 -6.3299 25 6 5.9292 -2.6844 -6.6209 26 6 5.4385 -1.8674 -5.6183 27 9 5.0511 -0.6049 -5.9033 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1269 1.4436 -0.0809 33 1 1.6121 1.9792 -0.8468 34 1 1.7442 1.9323 0.9278 35 1 1.6927 -1.7544 1.2395 36 1 1.6608 -0.2189 2.1390 37 1 3.5258 -1.7576 3.0767 38 1 5.0989 -1.0907 2.5780 39 1 5.2854 -0.5283 6.1488 40 1 3.3707 -2.5370 0.2550 41 1 5.0210 -2.0472 0.7075 42 1 6.0404 -0.2164 -0.6211 43 1 5.8038 -2.4003 -1.6952 44 1 4.1519 -2.9752 -2.0249 45 1 5.6727 -4.0179 -3.0190 46 1 6.5353 -5.4672 -4.8115 47 1 6.6993 -4.6161 -7.1145 48 1 6.0019 -2.3132 -7.6326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916646549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:12 Heat of formation + Delta-G solvation = -108.655503 kcal Electronic energy + Delta-G solvation = -28197.432406 eV Core-core repulsion = 24167.261716 eV Total energy + Delta-G solvation = -4030.170690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.88668 -40.26000 -38.52226 -37.48061 -35.88943 -33.95450 -32.40894 -31.03956 -30.87991 -29.62850 -27.24015 -26.58756 -26.10295 -24.28414 -22.95297 -22.56659 -21.38835 -20.64143 -19.42827 -18.56752 -17.35513 -16.89772 -16.73723 -16.38393 -15.86409 -15.77655 -15.19989 -15.12909 -14.78509 -14.61568 -14.26566 -13.99482 -13.83142 -13.51327 -13.28925 -13.14083 -12.95668 -12.43704 -12.37990 -12.23065 -12.00905 -11.75399 -11.56025 -11.44248 -11.28135 -11.20912 -10.97998 -10.88705 -10.70112 -10.68256 -10.34424 -10.22324 -9.86421 -9.73057 -9.62832 -9.24136 -9.17438 -8.43772 -8.42140 -7.25012 -6.03149 -4.03418 0.83266 0.99163 2.83619 3.29880 3.34371 3.38097 3.42036 4.00460 4.36810 4.43840 4.51891 4.57981 4.71105 4.83857 4.92382 4.93804 5.05321 5.16461 5.29258 5.30245 5.34572 5.47360 5.47663 5.57758 5.68595 5.75628 5.77882 5.88716 5.93273 5.98122 6.07671 6.07859 6.13802 6.34147 6.36505 6.40376 6.48171 6.56434 6.64472 6.93512 7.10791 7.15627 7.24648 7.26899 7.81008 8.00687 8.10167 8.19435 8.52120 9.04265 9.60654 11.07606 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.002739 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.902570 B =10218.688884 C =10902.551286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.134 4.134 4 C 0.066 3.934 5 N -0.518 5.518 6 C 0.196 3.804 7 C -0.501 4.501 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.902 5.902 11 Si 0.897 3.103 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.026 3.974 16 C 0.111 3.889 17 H 0.115 0.885 18 O -0.532 6.532 19 C 0.023 3.977 20 O -0.293 6.293 21 C 0.103 3.897 22 C -0.186 4.186 23 C -0.089 4.089 24 C -0.136 4.136 25 C -0.118 4.118 26 C 0.065 3.935 27 F -0.131 7.131 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.049 0.951 35 H 0.017 0.983 36 H 0.084 0.916 37 H -0.014 1.014 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.368 0.632 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -8.585 -20.614 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.192 4.192 4 C -0.063 4.063 5 N -0.241 5.241 6 C 0.072 3.928 7 C -0.539 4.539 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.542 5.542 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.104 4.104 16 C 0.050 3.950 17 H 0.132 0.868 18 O -0.336 6.336 19 C -0.053 4.053 20 O -0.206 6.206 21 C 0.056 3.944 22 C -0.205 4.205 23 C -0.108 4.108 24 C -0.154 4.154 25 C -0.137 4.137 26 C 0.046 3.954 27 F -0.110 7.110 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.102 0.898 37 H 0.004 0.996 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.214 0.786 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.155 0.845 46 H 0.149 0.851 47 H 0.150 0.850 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.064 -7.577 -20.794 22.132 hybrid contribution 0.092 -0.542 1.232 1.350 sum 0.028 -8.119 -19.562 21.180 Atomic orbital electron populations 1.21837 0.96279 1.00869 1.01419 1.21293 0.94074 0.97904 0.98072 1.21683 1.03384 0.94306 0.99798 1.22202 0.88577 0.97173 0.98325 1.61837 1.05813 1.46270 1.10219 1.19778 0.95059 0.96104 0.81883 1.21115 1.33639 1.02211 0.96964 0.91770 1.24965 0.95314 0.96445 0.97871 1.69936 1.36806 1.31384 1.16043 0.86580 0.78410 0.83439 0.79112 1.20334 1.21467 1.20110 1.22711 1.00591 0.93657 0.93411 1.22307 0.94531 0.86345 0.91779 0.86754 1.86660 1.24914 1.33575 1.88439 1.23877 1.01750 0.98686 0.80965 1.86256 1.78606 1.39174 1.16519 1.19154 0.96365 0.90752 0.88114 1.21240 1.05058 0.92906 1.01309 1.21030 0.97581 0.99753 0.92404 1.20905 1.02301 0.95102 0.97099 1.21030 0.99684 0.94247 0.98693 1.17043 1.05755 0.81446 0.91201 1.91520 1.88973 1.36627 1.93869 0.92662 0.93196 0.93473 0.92099 0.90096 0.94884 0.93222 0.96441 0.89804 0.99642 0.95092 0.92942 0.94381 0.91252 0.78583 0.91513 0.91262 0.84452 0.85108 0.84968 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.19 37.15 0.34 -1.65 16 2 C -0.09 -1.51 2.52 -90.62 -0.23 -1.73 16 3 C -0.13 -2.31 8.95 37.16 0.33 -1.98 16 4 C 0.07 1.21 4.24 -3.82 -0.02 1.20 16 5 N -0.52 -10.36 3.44 -236.07 -0.81 -11.17 16 6 C 0.20 4.86 4.67 -4.97 -0.02 4.84 16 7 C -0.50 -13.69 8.40 -34.44 -0.29 -13.98 16 8 H 0.06 1.76 7.56 -52.49 -0.40 1.36 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 11 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.03 0.42 4.72 -3.83 -0.02 0.40 16 16 C 0.11 1.61 3.23 -26.73 -0.09 1.52 16 17 H 0.12 1.79 4.78 -51.93 -0.25 1.54 16 18 O -0.53 -8.76 12.77 -40.07 -0.51 -9.27 16 19 C 0.02 0.27 4.38 37.16 0.16 0.44 16 20 O -0.29 -4.12 9.97 -24.44 -0.24 -4.37 16 21 C 0.10 1.27 6.69 -39.18 -0.26 1.01 16 22 C -0.19 -1.80 9.04 -39.45 -0.36 -2.16 16 23 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 24 C -0.14 -1.02 10.04 -39.57 -0.40 -1.41 16 25 C -0.12 -1.06 10.02 -39.54 -0.40 -1.46 16 26 C 0.07 0.80 7.31 -39.30 -0.29 0.51 16 27 F -0.13 -1.85 17.11 2.25 0.04 -1.81 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.93 5.08 -51.92 -0.26 0.67 16 32 H 0.08 1.58 7.31 -51.93 -0.38 1.20 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.02 0.31 7.57 -51.93 -0.39 -0.08 16 36 H 0.08 1.75 6.95 -51.93 -0.36 1.39 16 37 H -0.01 -0.38 8.05 -51.93 -0.42 -0.79 16 38 H 0.03 0.82 7.61 -51.93 -0.40 0.42 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.04 0.56 7.44 -51.93 -0.39 0.18 16 41 H 0.07 1.10 7.41 -51.93 -0.38 0.71 16 42 H 0.37 5.03 9.05 45.56 0.41 5.44 16 43 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 44 H 0.07 0.70 7.66 -51.93 -0.40 0.30 16 45 H 0.14 1.12 6.30 -52.49 -0.33 0.79 16 46 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 47 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 48 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -31.33 389.95 -8.81 -40.14 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.86 Total: 3.71 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.02 Total: -14.11 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.08 Total: -36.75 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.76 Total: -13.63 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.33 -8.81 -40.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916646549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.516 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds