Wall clock time and date at job start Sat Apr 11 2020 01:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 C 1.53003 * 109.47506 * 120.00346 * 2 1 3 5 5 N 1.46899 * 109.47242 * 181.08838 * 4 2 1 6 6 C 1.46899 * 110.99707 * 158.53554 * 5 4 2 7 7 C 1.50704 * 109.47096 * 288.18141 * 6 5 4 8 8 H 1.07998 * 120.00044 * 4.80120 * 7 6 5 9 9 C 1.37877 * 119.99793 * 184.81208 * 7 6 5 10 10 N 1.31508 * 120.00283 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99596 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47498 * 59.99539 * 11 9 7 13 13 H 1.48504 * 109.46855 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47127 * 299.99210 * 11 9 7 15 15 C 1.46896 * 110.99933 * 282.48613 * 5 4 2 16 16 C 1.53001 * 109.47039 * 90.16763 * 15 5 4 17 17 H 1.09005 * 109.47066 * 300.69090 * 16 15 5 18 18 O 1.42895 * 109.47031 * 60.69596 * 16 15 5 19 19 C 1.53000 * 109.46941 * 180.69599 * 16 15 5 20 20 O 1.42905 * 109.47315 * 174.99958 * 19 16 15 21 21 C 1.35955 * 117.00430 * 179.97438 * 20 19 16 22 22 C 1.38662 * 120.06061 * 0.02562 * 21 20 19 23 23 C 1.38177 * 119.96592 * 179.97438 * 22 21 20 24 24 C 1.38262 * 120.09608 * 0.02562 * 23 22 21 25 25 C 1.38248 * 120.12593 * 0.02562 * 24 23 22 26 26 C 1.38335 * 120.03142 * 359.70002 * 25 24 23 27 27 F 1.35102 * 120.04871 * 180.27592 * 26 25 24 28 28 H 1.08998 * 109.47617 * 299.99590 * 1 2 3 29 29 H 1.09004 * 109.47206 * 59.99953 * 1 2 3 30 30 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47201 * 240.00226 * 2 1 3 32 32 H 1.08999 * 109.47747 * 184.51335 * 3 2 1 33 33 H 1.09001 * 109.47546 * 304.51489 * 3 2 1 34 34 H 1.09004 * 109.46742 * 64.51833 * 3 2 1 35 35 H 1.08997 * 109.46940 * 61.08181 * 4 2 1 36 36 H 1.08998 * 109.46342 * 301.08869 * 4 2 1 37 37 H 1.09001 * 109.47277 * 48.17891 * 6 5 4 38 38 H 1.08995 * 109.47036 * 168.18076 * 6 5 4 39 39 H 0.97004 * 120.00309 * 180.02562 * 10 9 7 40 40 H 1.09002 * 109.47637 * 330.16673 * 15 5 4 41 41 H 1.09002 * 109.47209 * 210.16780 * 15 5 4 42 42 H 0.96701 * 114.00516 * 59.99952 * 18 16 15 43 43 H 1.09002 * 109.47612 * 294.99731 * 19 16 15 44 44 H 1.08999 * 109.47504 * 55.00211 * 19 16 15 45 45 H 1.07997 * 120.01561 * 359.97438 * 22 21 20 46 46 H 1.08004 * 119.94767 * 179.97438 * 23 22 21 47 47 H 1.07997 * 119.93260 * 179.97438 * 24 23 22 48 48 H 1.08009 * 119.98505 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5088 -0.6985 1.2624 6 6 4.0262 -0.9027 2.6220 7 6 3.7658 0.3300 3.4489 8 1 3.1981 1.1492 3.0330 9 6 4.2524 0.4119 4.7363 10 7 4.9434 -0.5858 5.2429 11 14 3.9301 1.9401 5.7611 12 1 2.4658 2.1312 5.9181 13 1 4.5542 1.7796 7.0990 14 1 4.5137 3.1242 5.0810 15 6 4.0591 -1.6956 0.3345 16 6 4.2483 -1.0595 -1.0441 17 1 3.2883 -0.6969 -1.4118 18 8 5.1633 0.0333 -0.9429 19 6 4.8052 -2.1027 -2.0150 20 8 4.8725 -1.5433 -3.3282 21 6 5.3496 -2.3452 -4.3171 22 6 5.7439 -3.6431 -4.0294 23 6 6.2279 -4.4565 -5.0360 24 6 6.3202 -3.9781 -6.3299 25 6 5.9292 -2.6844 -6.6209 26 6 5.4385 -1.8674 -5.6183 27 9 5.0511 -0.6049 -5.9033 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1269 1.4436 -0.0809 33 1 1.6121 1.9792 -0.8468 34 1 1.7442 1.9323 0.9278 35 1 1.6927 -1.7544 1.2395 36 1 1.6608 -0.2189 2.1390 37 1 3.5258 -1.7576 3.0767 38 1 5.0989 -1.0907 2.5780 39 1 5.2854 -0.5283 6.1488 40 1 3.3707 -2.5370 0.2550 41 1 5.0210 -2.0472 0.7075 42 1 6.0404 -0.2164 -0.6211 43 1 5.8038 -2.4003 -1.6952 44 1 4.1519 -2.9752 -2.0249 45 1 5.6727 -4.0179 -3.0190 46 1 6.5353 -5.4672 -4.8115 47 1 6.6993 -4.6161 -7.1145 48 1 6.0019 -2.3132 -7.6326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916646549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:11 Heat of formation + Delta-G solvation = -128.558752 kcal Electronic energy + Delta-G solvation = -28198.295475 eV Core-core repulsion = 24167.261716 eV Total energy + Delta-G solvation = -4031.033760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.81643 -41.11986 -39.77521 -38.45777 -37.14819 -35.57406 -34.31547 -32.07940 -31.64113 -30.60847 -29.00724 -27.86263 -27.38294 -25.84425 -23.97429 -23.40171 -22.69025 -22.09930 -20.79360 -19.41791 -18.50096 -18.19198 -17.82408 -17.72105 -17.00085 -16.96533 -16.63593 -16.20096 -15.86107 -15.74816 -15.40169 -15.34251 -15.05501 -14.87746 -14.67442 -14.23875 -14.13263 -13.75638 -13.74072 -13.30135 -13.24195 -13.01387 -12.81912 -12.75611 -12.66598 -12.55008 -12.37072 -12.27032 -12.09361 -12.01716 -11.93125 -11.66417 -11.45298 -11.31400 -11.11010 -10.77922 -10.58339 -9.94034 -9.21374 -8.89304 -8.17935 -6.25577 0.13319 0.27910 1.40369 1.42726 1.50354 1.93824 2.41387 2.61707 3.12347 3.18613 3.30277 3.55823 3.72760 3.80236 3.85373 4.00523 4.09173 4.15401 4.17994 4.23830 4.30372 4.33030 4.36853 4.45979 4.57959 4.63615 4.70002 4.80036 4.90902 4.93871 4.99447 5.07696 5.10877 5.13753 5.17688 5.23419 5.26769 5.27795 5.36424 5.43474 5.59772 5.68989 5.72094 5.73265 6.10469 6.29208 6.41764 6.67581 6.89431 6.93581 7.43080 8.92067 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.002739 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.902570 B =10218.688884 C =10902.551286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.128 4.128 4 C 0.068 3.932 5 N -0.526 5.526 6 C 0.213 3.787 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.005 3.995 10 N -0.934 5.934 11 Si 0.959 3.041 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.027 3.973 16 C 0.119 3.881 17 H 0.105 0.895 18 O -0.556 6.556 19 C 0.031 3.969 20 O -0.322 6.322 21 C 0.076 3.924 22 C -0.190 4.190 23 C -0.084 4.084 24 C -0.127 4.127 25 C -0.117 4.117 26 C 0.028 3.972 27 F -0.153 7.153 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.054 0.946 37 H -0.039 1.039 38 H 0.009 0.991 39 H 0.263 0.737 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.377 0.623 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.151 0.849 46 H 0.163 0.837 47 H 0.168 0.832 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 -10.055 -22.362 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.186 4.186 4 C -0.060 4.060 5 N -0.249 5.249 6 C 0.087 3.913 7 C -0.551 4.551 8 H 0.075 0.925 9 C -0.193 4.193 10 N -0.575 5.575 11 Si 0.785 3.215 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.198 1.198 15 C -0.102 4.102 16 C 0.059 3.941 17 H 0.122 0.878 18 O -0.361 6.361 19 C -0.045 4.045 20 O -0.236 6.236 21 C 0.030 3.970 22 C -0.209 4.209 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.135 4.135 26 C 0.008 3.992 27 F -0.132 7.132 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.072 0.928 37 H -0.022 1.022 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.225 0.775 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.169 0.831 46 H 0.181 0.819 47 H 0.185 0.815 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.231 -9.055 -22.567 24.317 hybrid contribution 0.186 -0.177 1.675 1.694 sum -0.045 -9.232 -20.892 22.841 Atomic orbital electron populations 1.21796 0.94087 1.02036 1.02017 1.21236 0.95808 0.96594 0.96929 1.21594 1.01718 0.95491 0.99766 1.22195 0.87577 0.97765 0.98512 1.61741 1.06887 1.48134 1.08175 1.19395 0.93485 0.94138 0.84237 1.21405 1.33294 1.02796 0.97633 0.92466 1.25773 0.95116 0.99350 0.99082 1.70046 1.37768 1.33201 1.16452 0.85586 0.78601 0.79777 0.77565 1.19497 1.20831 1.19769 1.22753 1.00734 0.93420 0.93275 1.22127 0.94092 0.86455 0.91391 0.87800 1.86620 1.25806 1.35054 1.88651 1.23724 1.02903 0.97847 0.79993 1.86176 1.79521 1.40595 1.17303 1.19430 0.98009 0.91842 0.87752 1.21489 1.04760 0.91988 1.02645 1.21483 0.95909 1.00809 0.92008 1.21371 1.00551 0.94553 0.98000 1.21357 0.98674 0.94601 0.98888 1.17568 1.07932 0.81344 0.92327 1.91451 1.89539 1.38172 1.94057 0.93231 0.91436 0.92066 0.90966 0.92741 0.92940 0.94766 0.95403 0.92786 1.02171 0.97295 0.92820 0.92503 0.91262 0.77525 0.90010 0.89162 0.83129 0.81919 0.81495 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.19 71.98 0.66 -2.96 16 2 C -0.09 -2.71 2.52 -10.80 -0.03 -2.74 16 3 C -0.13 -4.43 8.95 71.98 0.64 -3.79 16 4 C 0.07 2.53 4.24 86.30 0.37 2.90 16 5 N -0.53 -21.53 3.44 -900.80 -3.10 -24.63 16 6 C 0.21 10.97 4.67 85.56 0.40 11.37 16 7 C -0.51 -28.88 8.40 25.60 0.22 -28.66 16 8 H 0.06 3.24 7.56 -2.91 -0.02 3.21 16 9 C 0.00 0.26 5.46 84.66 0.46 0.72 16 10 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 11 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 C 0.03 0.87 4.72 86.30 0.41 1.28 16 16 C 0.12 3.44 3.23 30.59 0.10 3.53 16 17 H 0.10 3.21 4.78 -2.38 -0.01 3.20 16 18 O -0.56 -18.68 12.77 -144.35 -1.84 -20.52 16 19 C 0.03 0.70 4.38 71.98 0.31 1.01 16 20 O -0.32 -9.06 9.97 -88.41 -0.88 -9.94 16 21 C 0.08 1.83 6.69 22.53 0.15 1.98 16 22 C -0.19 -3.26 9.04 22.36 0.20 -3.06 16 23 C -0.08 -1.02 10.04 22.26 0.22 -0.79 16 24 C -0.13 -1.45 10.04 22.28 0.22 -1.22 16 25 C -0.12 -1.89 10.02 22.30 0.22 -1.67 16 26 C 0.03 0.68 7.31 22.45 0.16 0.84 16 27 F -0.15 -4.49 17.11 44.97 0.77 -3.72 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 2.13 5.08 -2.38 -0.01 2.11 16 32 H 0.05 2.16 7.31 -2.39 -0.02 2.15 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.03 0.97 7.57 -2.39 -0.02 0.95 16 36 H 0.05 2.33 6.95 -2.39 -0.02 2.31 16 37 H -0.04 -2.18 8.05 -2.39 -0.02 -2.20 16 38 H 0.01 0.49 7.61 -2.39 -0.02 0.47 16 39 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 40 H 0.06 1.61 7.44 -2.39 -0.02 1.59 16 41 H 0.07 2.20 7.41 -2.39 -0.02 2.19 16 42 H 0.38 10.61 9.05 -74.06 -0.67 9.94 16 43 H 0.08 1.58 7.66 -2.39 -0.02 1.56 16 44 H 0.09 1.64 7.66 -2.39 -0.02 1.62 16 45 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16 46 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 47 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 48 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -70.65 389.95 2.27 -68.38 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.29 Total: 20.12 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 4.73 Total: -21.25 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.81 Total: -79.94 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -2.73 Total: -30.46 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.77 Total: -3.72 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.65 2.27 -68.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916646549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.182 kcal (2) G-P(sol) polarization free energy of solvation -70.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds