Wall clock time and date at job start Sat Apr 11 2020 01:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46634 * 2 1 4 4 H 1.08998 * 109.46877 * 305.90357 * 3 2 1 5 5 C 1.53001 * 109.47118 * 65.90548 * 3 2 1 6 6 N 1.46895 * 109.46964 * 183.27573 * 5 3 2 7 7 C 1.46906 * 110.99682 * 175.22065 * 6 5 3 8 8 C 1.50705 * 109.46694 * 180.02562 * 7 6 5 9 9 C 1.38301 * 119.93047 * 269.72754 * 8 7 6 10 10 C 1.38101 * 120.06959 * 179.73032 * 9 8 7 11 11 C 1.38882 * 119.92646 * 0.56736 * 10 9 8 12 12 O 1.35753 * 120.06814 * 179.68716 * 11 10 9 13 13 C 1.34830 * 116.99890 * 185.96318 * 12 11 10 14 14 H 1.08001 * 120.00028 * 5.15122 * 13 12 11 15 15 C 1.38656 * 119.99775 * 185.13987 * 13 12 11 16 16 N 1.31557 * 120.00008 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99957 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47036 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47209 * 120.00308 * 17 15 13 20 20 H 1.48501 * 109.47160 * 240.00520 * 17 15 13 21 21 C 1.38879 * 119.86548 * 359.70183 * 11 10 9 22 22 C 1.38099 * 119.93066 * 0.02562 * 21 11 10 23 23 C 1.50703 * 109.46850 * 185.90692 * 3 2 1 24 24 C 1.38235 * 119.99812 * 299.72254 * 23 3 2 25 25 C 1.38231 * 120.00200 * 179.80923 * 24 23 3 26 26 C 1.38238 * 119.99764 * 0.40489 * 25 24 23 27 27 C 1.38236 * 119.99828 * 359.84995 * 26 25 24 28 28 C 1.38229 * 120.00045 * 359.95949 * 27 26 25 29 29 H 1.09001 * 109.47479 * 304.49381 * 1 2 3 30 30 H 1.08996 * 109.47092 * 64.49966 * 1 2 3 31 31 H 1.09000 * 109.46442 * 184.49579 * 1 2 3 32 32 H 1.09002 * 109.47064 * 240.00289 * 2 1 3 33 33 H 1.08995 * 109.47051 * 119.99603 * 2 1 3 34 34 H 1.08998 * 109.47091 * 63.27876 * 5 3 2 35 35 H 1.08992 * 109.47180 * 303.28231 * 5 3 2 36 36 H 1.00898 * 110.99930 * 51.27188 * 6 5 3 37 37 H 1.08998 * 109.47071 * 300.00115 * 7 6 5 38 38 H 1.08992 * 109.47031 * 60.00866 * 7 6 5 39 39 H 1.08001 * 119.96420 * 359.97438 * 9 8 7 40 40 H 1.07994 * 120.03578 * 180.27339 * 10 9 8 41 41 H 0.97001 * 119.99734 * 179.97438 * 16 15 13 42 42 H 1.07991 * 120.03637 * 179.97438 * 21 11 10 43 43 H 1.08000 * 119.97087 * 179.97438 * 22 21 11 44 44 H 1.08007 * 120.00121 * 0.02562 * 24 23 3 45 45 H 1.08002 * 120.00420 * 180.23253 * 25 24 23 46 46 H 1.08001 * 120.00137 * 179.83495 * 26 25 24 47 47 H 1.08000 * 120.00163 * 179.97438 * 27 26 25 48 48 H 1.08004 * 120.00137 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5928 1.9859 -0.8324 5 6 1.6547 2.1197 1.3168 6 7 2.0751 3.5268 1.2852 7 6 1.6214 4.2390 2.4873 8 6 2.0697 5.6762 2.4189 9 6 3.2925 6.0435 2.9505 10 6 3.7087 7.3587 2.8844 11 6 2.8926 8.3148 2.2940 12 8 3.2961 9.6096 2.2332 13 6 2.4072 10.5062 1.7602 14 1 1.3987 10.1964 1.5289 15 6 2.7876 11.8260 1.5708 16 7 4.0161 12.2033 1.8523 17 14 1.5562 13.0681 0.9148 18 1 0.2533 12.3959 0.6783 19 1 1.3772 14.1589 1.9063 20 1 2.0590 13.6369 -0.3615 21 6 1.6628 7.9438 1.7661 22 6 1.2548 6.6260 1.8302 23 6 3.5399 1.4452 -0.1462 24 6 4.3276 0.8175 0.8005 25 6 5.7032 0.8164 0.6644 26 6 6.2915 1.4502 -0.4141 27 6 5.5040 2.0824 -1.3580 28 6 4.1282 2.0801 -1.2239 29 1 -0.3634 0.5820 0.8470 30 1 -0.3633 0.4424 -0.9275 31 1 -0.3632 -1.0245 0.0806 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.1487 1.6114 2.1449 35 1 0.5743 2.0661 1.4504 36 1 1.7456 3.9839 0.4482 37 1 0.5335 4.2004 2.5436 38 1 2.0480 3.7667 3.3721 39 1 3.9243 5.3004 3.4141 40 1 4.6656 7.6442 3.2957 41 1 4.2823 13.1266 1.7195 42 1 1.0259 8.6851 1.3068 43 1 0.2984 6.3368 1.4203 44 1 3.8682 0.3249 1.6448 45 1 6.3186 0.3228 1.4020 46 1 7.3664 1.4517 -0.5191 47 1 5.9635 2.5780 -2.2004 48 1 3.5129 2.5744 -1.9612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920957277.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:18 Heat of formation + Delta-G solvation = 6.466947 kcal Electronic energy + Delta-G solvation = -26226.340144 eV Core-core repulsion = 22631.930763 eV Total energy + Delta-G solvation = -3594.409381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.70163 -39.01470 -37.29488 -36.40006 -34.24901 -32.26430 -31.20752 -30.86509 -30.14000 -29.77933 -27.22381 -25.54913 -24.51007 -23.13413 -22.77259 -22.05435 -21.90530 -20.46953 -19.85912 -17.95535 -17.11618 -16.91241 -15.84755 -15.61331 -15.10545 -14.91672 -14.60547 -14.52333 -14.34193 -14.22811 -13.66366 -13.54640 -13.53523 -13.37633 -13.17806 -12.97585 -12.65660 -12.49007 -12.32570 -12.04249 -11.97119 -11.70069 -11.54428 -11.34127 -11.25991 -11.12288 -10.78113 -10.75029 -10.63440 -10.57038 -10.46086 -10.38566 -9.33317 -8.87168 -8.82354 -8.63067 -8.26600 -8.12313 -7.14797 -6.43735 -4.02326 1.41701 1.44955 2.26459 2.32636 3.12621 3.13968 3.19598 3.81667 3.97605 4.20609 4.44837 4.61737 4.73214 4.89284 4.97328 5.03632 5.08573 5.10385 5.13445 5.21318 5.26428 5.31315 5.40318 5.42404 5.50354 5.52491 5.56021 5.66204 5.69681 5.74115 5.78633 5.86294 5.93006 5.96406 6.01330 6.07319 6.09171 6.25531 6.47149 6.49650 6.54514 6.66074 6.74853 6.93831 7.03335 7.06763 7.15376 7.30093 7.39876 7.46596 7.54191 7.87132 8.01571 9.02130 9.73383 10.74558 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015048 B = 0.002436 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.265466 B =11491.639646 C =12257.030411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.050 4.050 4 H 0.076 0.924 5 C 0.064 3.936 6 N -0.679 5.679 7 C 0.119 3.881 8 C -0.182 4.182 9 C -0.051 4.051 10 C -0.194 4.194 11 C 0.156 3.844 12 O -0.179 6.179 13 C -0.390 4.390 14 H 0.091 0.909 15 C 0.038 3.962 16 N -0.863 5.863 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.234 4.234 22 C -0.066 4.066 23 C -0.051 4.051 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.128 4.128 27 C -0.117 4.117 28 C -0.111 4.111 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.340 0.660 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 -24.065 -4.002 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.069 4.069 4 H 0.094 0.906 5 C -0.065 4.065 6 N -0.310 5.310 7 C -0.009 4.009 8 C -0.184 4.184 9 C -0.070 4.070 10 C -0.214 4.214 11 C 0.102 3.898 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.254 4.254 22 C -0.085 4.085 23 C -0.051 4.051 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.146 4.146 27 C -0.135 4.135 28 C -0.129 4.129 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.158 0.842 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.776 -23.862 -3.682 24.304 hybrid contribution -1.499 0.875 -0.563 1.825 sum -4.276 -22.988 -4.245 23.764 Atomic orbital electron populations 1.21863 0.95728 1.01666 1.02073 1.21537 0.95726 0.95484 1.02384 1.20275 0.91917 0.96283 0.98398 0.90554 1.22095 0.97459 0.90000 0.96923 1.60545 1.64276 1.01209 1.05009 1.20599 0.96140 0.91287 0.92846 1.19111 0.97198 0.93684 1.08378 1.20455 0.94711 0.94382 0.97420 1.20218 1.01180 0.92221 1.07753 1.19408 0.92218 0.85808 0.92362 1.83994 1.40406 1.11570 1.72261 1.21356 0.92769 0.88186 1.44356 0.89118 1.25287 0.97189 0.97096 0.97002 1.70051 1.16937 1.17998 1.44806 0.85657 0.79417 0.79830 0.78579 1.19137 1.20152 1.20149 1.21112 0.98900 0.96613 1.08729 1.20579 0.97806 0.92688 0.97459 1.19563 0.94569 0.96604 0.94373 1.20848 0.93514 1.00027 0.98504 1.21060 0.94882 0.99916 0.97945 1.21075 0.99556 0.98842 0.95177 1.21094 0.93920 0.99317 0.99205 1.20984 0.94801 0.99195 0.97958 0.92337 0.92728 0.92735 0.91673 0.91712 0.91136 0.95012 0.84230 0.95674 0.91333 0.87158 0.86636 0.92093 0.85705 0.88025 0.86733 0.86588 0.86588 0.86442 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.78 37.16 0.36 -0.68 16 2 C -0.11 -0.84 5.12 -26.73 -0.14 -0.97 16 3 C -0.05 -0.45 2.13 -91.77 -0.20 -0.64 16 4 H 0.08 0.68 7.87 -51.93 -0.41 0.28 16 5 C 0.06 0.63 4.83 -3.83 -0.02 0.61 16 6 N -0.68 -8.47 6.19 -115.06 -0.71 -9.18 16 7 C 0.12 1.62 5.80 -4.97 -0.03 1.59 16 8 C -0.18 -3.14 5.40 -104.57 -0.56 -3.70 16 9 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 10 C -0.19 -4.23 9.99 -39.39 -0.39 -4.62 16 11 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 12 O -0.18 -5.18 9.76 0.04 0.00 -5.18 16 13 C -0.39 -11.02 9.44 30.89 0.29 -10.73 16 14 H 0.09 2.38 5.30 -52.49 -0.28 2.10 16 15 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 16 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 17 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 C -0.23 -5.14 9.13 -39.40 -0.36 -5.50 16 22 C -0.07 -1.22 9.69 -39.61 -0.38 -1.60 16 23 C -0.05 -0.54 4.47 -104.62 -0.47 -1.01 16 24 C -0.11 -1.16 8.73 -39.59 -0.35 -1.50 16 25 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 27 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 28 C -0.11 -1.24 9.67 -39.59 -0.38 -1.62 16 29 H 0.06 0.40 6.34 -51.93 -0.33 0.07 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.46 7.62 -51.93 -0.40 0.06 16 34 H 0.07 0.71 7.26 -51.93 -0.38 0.33 16 35 H 0.03 0.29 6.35 -51.93 -0.33 -0.04 16 36 H 0.34 4.30 8.66 -39.29 -0.34 3.96 16 37 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 38 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 2.76 5.72 -52.49 -0.30 2.46 16 43 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.04 7.16 -52.48 -0.38 0.66 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 48 H 0.12 1.16 7.95 -52.48 -0.42 0.75 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -30.93 394.13 -10.92 -41.86 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.33 Total: 7.98 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -4.56 Total: -32.26 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.05 Total: -33.97 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.93 -10.92 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920957277.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.324 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds