Wall clock time and date at job start Sat Apr 11 2020 01:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47208 * 2 1 4 4 C 1.52996 * 109.47013 * 120.00387 * 2 1 3 5 5 N 1.46896 * 109.47346 * 58.35507 * 4 2 1 6 6 C 1.46896 * 111.00457 * 74.23217 * 5 4 2 7 7 C 1.50697 * 109.47389 * 284.18726 * 6 5 4 8 8 H 1.08005 * 119.99643 * 354.73233 * 7 6 5 9 9 C 1.37872 * 119.99936 * 174.73837 * 7 6 5 10 10 N 1.31512 * 120.00466 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99851 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47217 * 89.99655 * 11 9 7 13 13 H 1.48496 * 109.47138 * 209.99416 * 11 9 7 14 14 H 1.48506 * 109.47112 * 329.99586 * 11 9 7 15 15 C 1.46909 * 110.99702 * 198.19105 * 5 4 2 16 16 C 1.52998 * 109.47067 * 79.02894 * 15 5 4 17 17 H 1.09007 * 109.47338 * 52.26355 * 16 15 5 18 18 O 1.42898 * 109.47584 * 292.26441 * 16 15 5 19 19 C 1.52998 * 109.47041 * 172.26185 * 16 15 5 20 20 O 1.42899 * 109.47144 * 185.00539 * 19 16 15 21 21 C 1.35947 * 116.99617 * 180.02562 * 20 19 16 22 22 C 1.38707 * 120.02714 * 179.97438 * 21 20 19 23 23 C 1.38157 * 119.97279 * 179.69726 * 22 21 20 24 24 C 1.38454 * 120.02663 * 0.27866 * 23 22 21 25 25 F 1.35102 * 119.97165 * 179.97438 * 24 23 22 26 26 C 1.38461 * 120.06076 * 359.97438 * 24 23 22 27 27 C 1.38147 * 120.02765 * 359.97438 * 26 24 23 28 28 H 1.09003 * 109.46996 * 59.99679 * 1 2 3 29 29 H 1.09006 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47297 * 299.99564 * 1 2 3 31 31 H 1.09004 * 109.47022 * 240.00219 * 2 1 3 32 32 H 1.09001 * 109.47192 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46738 * 300.00199 * 3 2 1 34 34 H 1.08996 * 109.46636 * 60.00031 * 3 2 1 35 35 H 1.08997 * 109.47002 * 298.34751 * 4 2 1 36 36 H 1.09003 * 109.47017 * 178.35064 * 4 2 1 37 37 H 1.09006 * 109.46750 * 44.18568 * 6 5 4 38 38 H 1.09004 * 109.46854 * 164.18348 * 6 5 4 39 39 H 0.96996 * 120.00442 * 180.02562 * 10 9 7 40 40 H 1.08992 * 109.47046 * 319.03108 * 15 5 4 41 41 H 1.09003 * 109.46727 * 199.03003 * 15 5 4 42 42 H 0.96706 * 113.99487 * 300.00188 * 18 16 15 43 43 H 1.08994 * 109.47058 * 64.99898 * 19 16 15 44 44 H 1.09010 * 109.47179 * 305.00206 * 19 16 15 45 45 H 1.08009 * 120.01753 * 359.97371 * 22 21 20 46 46 H 1.07996 * 119.98649 * 180.30040 * 23 22 21 47 47 H 1.07999 * 119.98679 * 180.02562 * 26 24 23 48 48 H 1.08001 * 120.01669 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.5181 -2.0943 1.2692 6 6 2.2118 -2.9356 0.2849 7 6 1.7091 -2.6096 -1.0979 8 1 0.8915 -1.9155 -1.2254 9 6 2.2928 -3.1974 -2.2000 10 7 3.2886 -4.0422 -2.0447 11 14 1.6691 -2.7937 -3.9140 12 1 2.4154 -1.6273 -4.4503 13 1 1.8746 -3.9645 -4.8039 14 1 0.2215 -2.4684 -3.8501 15 6 1.6118 -2.6735 2.6160 16 6 0.4638 -2.1459 3.4790 17 1 -0.4824 -2.3049 2.9617 18 8 0.6485 -0.7488 3.7152 19 6 0.4460 -2.8912 4.8151 20 8 -0.6939 -2.4821 5.5736 21 6 -0.8591 -3.0534 6.7960 22 6 -1.9439 -2.7018 7.5856 23 6 -2.1142 -3.2877 8.8251 24 6 -1.1994 -4.2213 9.2817 25 9 -1.3667 -4.7933 10.4942 26 6 -0.1131 -4.5694 8.4967 27 6 0.0588 -3.9857 7.2565 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.7010 -0.1907 2.1389 36 1 3.1296 -0.7470 1.2345 37 1 3.2839 -2.7456 0.3359 38 1 2.0180 -3.9858 0.5037 39 1 3.6994 -4.4555 -2.8201 40 1 2.5637 -2.3930 3.0667 41 1 1.5471 -3.7596 2.5497 42 1 1.4724 -0.5330 4.1733 43 1 1.3545 -2.6610 5.3716 44 1 0.3944 -3.9645 4.6318 45 1 -2.6578 -1.9735 7.2297 46 1 -2.9614 -3.0177 9.4380 47 1 0.5995 -5.2981 8.8539 48 1 0.9059 -4.2577 6.6442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921230828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:22 Heat of formation + Delta-G solvation = -126.493182 kcal Electronic energy + Delta-G solvation = -27763.596099 eV Core-core repulsion = 23732.651909 eV Total energy + Delta-G solvation = -4030.944190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.82302 -41.18096 -39.76668 -38.35334 -37.22230 -35.14396 -34.44110 -32.37418 -31.72071 -30.24177 -29.14841 -27.75057 -27.21230 -25.64020 -24.20798 -23.32919 -22.56138 -22.18917 -20.53919 -19.30190 -18.55737 -18.31774 -17.92704 -17.59959 -16.87942 -16.78079 -16.59195 -16.35903 -15.82040 -15.69628 -15.44032 -15.20755 -14.90783 -14.69631 -14.48055 -14.17289 -14.05508 -13.91194 -13.85500 -13.41609 -13.28652 -13.14228 -12.97579 -12.82355 -12.68150 -12.57981 -12.27749 -12.09102 -11.92517 -11.81235 -11.68549 -11.54912 -11.44600 -11.36027 -10.96689 -10.58322 -10.36636 -10.19240 -9.11407 -8.89651 -8.12678 -6.15945 0.15773 0.19601 1.41469 1.42613 1.53068 2.02988 2.44057 2.56444 3.19481 3.29233 3.34448 3.47316 3.68216 3.80715 3.95429 4.02345 4.08622 4.18284 4.27977 4.30376 4.32378 4.40060 4.44976 4.58643 4.65047 4.72672 4.85197 4.90620 4.95379 5.00273 5.09504 5.11672 5.14500 5.17684 5.19651 5.23245 5.26425 5.30898 5.38957 5.52056 5.69826 5.71063 5.87086 5.93141 6.19117 6.35525 6.47691 6.74045 6.86732 6.99316 7.49588 8.97775 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002368 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.559316 B =11819.174881 C =12599.267729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.110 4.110 3 C -0.136 4.136 4 C 0.071 3.929 5 N -0.532 5.532 6 C 0.206 3.794 7 C -0.502 4.502 8 H 0.083 0.917 9 C -0.001 4.001 10 N -0.939 5.939 11 Si 0.951 3.049 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.264 1.264 15 C 0.027 3.973 16 C 0.133 3.867 17 H 0.095 0.905 18 O -0.554 6.554 19 C 0.032 3.968 20 O -0.315 6.315 21 C 0.111 3.889 22 C -0.133 4.133 23 C -0.110 4.110 24 C 0.037 3.963 25 F -0.150 7.150 26 C -0.114 4.114 27 C -0.186 4.186 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.102 0.898 36 H -0.001 1.001 37 H -0.037 1.037 38 H 0.000 1.000 39 H 0.259 0.741 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.381 0.619 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.151 0.849 46 H 0.161 0.839 47 H 0.154 0.846 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 3.981 20.503 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.128 4.128 3 C -0.194 4.194 4 C -0.057 4.057 5 N -0.256 5.256 6 C 0.080 3.920 7 C -0.540 4.540 8 H 0.101 0.899 9 C -0.198 4.198 10 N -0.581 5.581 11 Si 0.777 3.223 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.188 1.188 15 C -0.102 4.102 16 C 0.073 3.927 17 H 0.113 0.887 18 O -0.361 6.361 19 C -0.044 4.044 20 O -0.228 6.228 21 C 0.065 3.935 22 C -0.151 4.151 23 C -0.129 4.129 24 C 0.017 3.983 25 F -0.129 7.129 26 C -0.132 4.132 27 C -0.204 4.204 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.018 0.982 37 H -0.019 1.019 38 H 0.018 0.982 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.230 0.770 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.168 0.832 46 H 0.179 0.821 47 H 0.172 0.828 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.456 4.044 19.911 21.642 hybrid contribution 1.705 -0.759 -0.496 1.931 sum -5.751 3.285 19.415 20.513 Atomic orbital electron populations 1.21493 0.95063 1.01054 0.99747 1.21389 0.96575 0.95395 0.99467 1.21751 1.00162 0.95677 1.01805 1.22283 0.94431 0.89158 0.99780 1.61872 1.57156 1.02665 1.03863 1.19508 0.90152 0.91196 0.91138 1.21774 1.16848 1.24581 0.90831 0.89890 1.25790 0.95533 0.95461 1.03021 1.70077 1.25641 1.31268 1.31093 0.85643 0.79199 0.77515 0.79942 1.20193 1.21355 1.18840 1.22654 0.96946 0.99947 0.90642 1.21704 0.99139 0.80741 0.91082 0.88716 1.86639 1.45850 1.23110 1.80519 1.23641 0.87916 1.00483 0.92329 1.86148 1.46612 1.63492 1.26595 1.19346 0.95264 0.93276 0.85638 1.20517 0.98055 1.03035 0.93527 1.21175 0.99696 0.95720 0.96291 1.17822 0.98757 0.98964 0.82723 1.91469 1.95585 1.83719 1.42101 1.21173 0.97346 1.00768 0.93934 1.21350 1.01567 0.99685 0.97847 0.94317 0.93432 0.92940 0.91296 0.93662 0.92743 0.91827 0.87996 0.98250 1.01926 0.98180 0.93182 0.93645 0.90686 0.76958 0.89487 0.89880 0.83158 0.82139 0.82838 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.33 71.98 0.60 -3.52 16 2 C -0.11 -4.06 2.39 -10.79 -0.03 -4.09 16 3 C -0.14 -4.08 9.19 71.98 0.66 -3.42 16 4 C 0.07 2.56 4.22 86.30 0.36 2.92 16 5 N -0.53 -20.83 3.53 -900.80 -3.18 -24.02 16 6 C 0.21 10.34 4.76 85.56 0.41 10.75 16 7 C -0.50 -26.96 6.95 25.60 0.18 -26.78 16 8 H 0.08 4.34 4.48 -2.91 -0.01 4.32 16 9 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 10 N -0.94 -55.65 13.29 21.45 0.28 -55.36 16 11 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 14 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 15 C 0.03 0.81 4.82 86.30 0.42 1.22 16 16 C 0.13 3.30 3.46 30.59 0.11 3.40 16 17 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 18 O -0.55 -13.49 10.71 -144.34 -1.55 -15.04 16 19 C 0.03 0.60 4.37 71.98 0.31 0.92 16 20 O -0.31 -7.01 10.10 -88.31 -0.89 -7.90 16 21 C 0.11 2.18 6.69 22.49 0.15 2.33 16 22 C -0.13 -2.33 9.98 22.36 0.22 -2.11 16 23 C -0.11 -1.75 10.02 22.30 0.22 -1.53 16 24 C 0.04 0.66 7.30 22.37 0.16 0.82 16 25 F -0.15 -2.93 17.27 44.97 0.78 -2.15 16 26 C -0.11 -1.84 10.02 22.30 0.22 -1.62 16 27 C -0.19 -3.11 9.04 22.36 0.20 -2.91 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.91 6.56 -2.38 -0.02 1.89 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 3.14 5.07 -2.39 -0.01 3.13 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 3.13 5.06 -2.39 -0.01 3.11 16 36 H 0.00 -0.03 7.77 -2.39 -0.02 -0.05 16 37 H -0.04 -2.07 7.75 -2.38 -0.02 -2.08 16 38 H 0.00 0.01 7.56 -2.38 -0.02 -0.01 16 39 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.05 1.21 7.95 -2.39 -0.02 1.20 16 41 H 0.07 2.27 7.52 -2.39 -0.02 2.25 16 42 H 0.38 6.45 8.86 -74.05 -0.66 5.80 16 43 H 0.09 1.26 7.65 -2.39 -0.02 1.24 16 44 H 0.08 1.42 7.67 -2.38 -0.02 1.40 16 45 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 46 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 47 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 48 H 0.15 2.01 6.30 -2.91 -0.02 1.99 16 Total: -1.00 -65.34 384.28 2.44 -62.90 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.31 Total: 18.83 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 4.67 Total: -23.22 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.90 Total: -79.38 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -2.44 Total: -22.94 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.34 2.44 -62.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921230828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.594 kcal (2) G-P(sol) polarization free energy of solvation -65.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds