Wall clock time and date at job start Sat Apr 11 2020 01:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46502 * 2 1 4 4 C 1.50702 * 109.47127 * 119.99339 * 2 1 3 5 5 C 1.38238 * 119.99641 * 85.50878 * 4 2 1 6 6 C 1.38232 * 119.99769 * 179.81130 * 5 4 2 7 7 C 1.38239 * 119.99890 * 0.39944 * 6 5 4 8 8 C 1.38230 * 120.00318 * 359.84884 * 7 6 5 9 9 C 1.38234 * 120.00096 * 265.78244 * 4 2 1 10 10 N 1.46890 * 109.47298 * 239.99847 * 2 1 3 11 11 C 1.46902 * 110.99927 * 159.36451 * 10 2 1 12 12 C 1.50707 * 109.47322 * 66.04709 * 11 10 2 13 13 C 1.38236 * 119.99474 * 269.72884 * 12 11 10 14 14 C 1.38232 * 119.99542 * 179.76610 * 13 12 11 15 15 C 1.38235 * 120.00039 * 0.50241 * 14 13 12 16 16 C 1.38230 * 120.00298 * 359.74921 * 15 14 13 17 17 C 1.38225 * 120.00265 * 89.99807 * 12 11 10 18 18 C 1.46900 * 111.00348 * 35.41200 * 10 2 1 19 19 C 1.52998 * 109.46702 * 270.71206 * 18 10 2 20 20 H 1.08997 * 109.47416 * 62.59481 * 19 18 10 21 21 O 1.42904 * 109.47320 * 302.59147 * 19 18 10 22 22 C 1.50702 * 109.46837 * 182.59522 * 19 18 10 23 23 H 1.07994 * 120.00055 * 5.24136 * 22 19 18 24 24 C 1.37884 * 119.99842 * 185.24398 * 22 19 18 25 25 N 1.31513 * 120.00083 * 5.39186 * 24 22 19 26 26 Si 1.86796 * 119.99779 * 185.38961 * 24 22 19 27 27 H 1.48501 * 109.47356 * 90.00101 * 26 24 22 28 28 H 1.48502 * 109.47045 * 210.00062 * 26 24 22 29 29 H 1.48495 * 109.47431 * 330.00040 * 26 24 22 30 30 H 1.08991 * 109.47162 * 305.83915 * 1 2 3 31 31 H 1.08996 * 109.46706 * 65.84224 * 1 2 3 32 32 H 1.09001 * 109.46734 * 185.83882 * 1 2 3 33 33 H 1.07990 * 119.99907 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.99951 * 180.23194 * 6 5 4 35 35 H 1.08007 * 119.99600 * 179.83718 * 7 6 5 36 36 H 1.08002 * 120.00477 * 179.97438 * 8 7 6 37 37 H 1.07995 * 120.00411 * 359.97438 * 9 4 2 38 38 H 1.09004 * 109.47173 * 186.04390 * 11 10 2 39 39 H 1.09001 * 109.47492 * 306.04296 * 11 10 2 40 40 H 1.07995 * 120.00179 * 359.97438 * 13 12 11 41 41 H 1.08008 * 120.00004 * 180.23306 * 14 13 12 42 42 H 1.08006 * 119.99744 * 179.72591 * 15 14 13 43 43 H 1.07995 * 120.00551 * 179.97438 * 16 15 14 44 44 H 1.08000 * 120.00106 * 0.02562 * 17 12 11 45 45 H 1.09001 * 109.46708 * 30.70743 * 18 10 2 46 46 H 1.09001 * 109.47367 * 150.71114 * 18 10 2 47 47 H 0.96693 * 113.99857 * 300.00414 * 21 19 18 48 48 H 0.97001 * 119.99847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 6 2.1744 -2.0853 1.2253 6 6 2.6389 -2.7365 2.3527 7 6 2.9535 -2.0134 3.4881 8 6 2.8067 -0.6389 3.4951 9 6 2.3458 0.0126 2.3664 10 7 2.0197 -0.6925 -1.1993 11 6 3.4053 -0.3081 -1.5003 12 6 4.3134 -0.8036 -0.4044 13 6 4.5783 -0.0008 0.6894 14 6 5.4074 -0.4571 1.6970 15 6 5.9799 -1.7120 1.6058 16 6 5.7193 -2.5127 0.5095 17 6 4.8860 -2.0584 -0.4956 18 6 1.1415 -0.4388 -2.3492 19 6 0.0382 -1.4979 -2.3916 20 1 -0.5735 -1.4216 -1.4926 21 8 0.6279 -2.7979 -2.4575 22 6 -0.8250 -1.2757 -3.6068 23 1 -0.5595 -0.5150 -4.3259 24 6 -1.9537 -2.0436 -3.8004 25 7 -2.3360 -2.8958 -2.8746 26 14 -2.9398 -1.8734 -5.3777 27 1 -2.4202 -2.8260 -6.3916 28 1 -4.3681 -2.1730 -5.1033 29 1 -2.8150 -0.4861 -5.8923 30 1 -0.3633 0.6017 0.8330 31 1 -0.3632 0.4206 -0.9377 32 1 -0.3633 -1.0224 0.1045 33 1 1.9249 -2.6505 0.3396 34 1 2.7534 -3.8104 2.3474 35 1 3.3139 -2.5225 4.3699 36 1 3.0521 -0.0741 4.3823 37 1 2.2311 1.0865 2.3718 38 1 3.7070 -0.7504 -2.4498 39 1 3.4749 0.7776 -1.5668 40 1 4.1347 0.9815 0.7584 41 1 5.6114 0.1686 2.5534 42 1 6.6313 -2.0667 2.3909 43 1 6.1669 -3.4929 0.4381 44 1 4.6828 -2.6836 -1.3524 45 1 0.6927 0.5498 -2.2524 46 1 1.7247 -0.4847 -3.2690 47 1 1.1871 -2.9371 -3.2340 48 1 -3.1299 -3.4363 -3.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929366682.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:29 Heat of formation + Delta-G solvation = 26.432315 kcal Electronic energy + Delta-G solvation = -29126.328383 eV Core-core repulsion = 25532.784765 eV Total energy + Delta-G solvation = -3593.543618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17125 -38.14744 -37.51086 -34.97642 -32.39157 -32.08541 -31.31314 -30.80759 -30.17058 -28.59453 -28.07479 -25.32259 -24.33501 -22.65706 -22.27339 -22.00806 -20.83134 -20.48926 -19.44047 -16.85527 -16.61826 -16.56128 -15.57374 -15.35524 -14.88805 -14.69944 -14.60250 -14.46039 -14.17048 -14.11999 -13.33818 -13.20494 -12.99902 -12.92388 -12.83523 -12.57127 -12.42712 -12.01083 -11.98140 -11.62215 -11.41783 -11.08843 -11.05149 -10.95519 -10.82405 -10.74491 -10.64388 -10.52060 -10.32303 -10.26318 -9.99913 -8.93654 -8.85458 -8.73175 -8.47339 -8.23667 -8.16776 -7.88397 -7.52467 -6.00968 -4.16835 1.57763 1.63099 1.84486 1.96207 3.27922 3.35412 3.36834 3.97383 4.24131 4.37577 4.56766 5.02462 5.07442 5.16583 5.21160 5.25926 5.28658 5.31944 5.34313 5.48941 5.53320 5.66428 5.69578 5.75355 5.84304 5.88576 5.90589 6.04376 6.08902 6.12265 6.21508 6.26790 6.30891 6.36424 6.50302 6.56847 6.60527 6.71602 6.76252 6.81889 6.84859 6.90522 6.94543 7.02463 7.12909 7.27293 7.47101 7.60147 7.63872 7.80545 7.98151 8.24926 8.89524 9.49075 9.64335 11.04145 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.003938 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.919409 B = 7108.254379 C = 7514.677317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.039 0.961 4 C -0.054 4.054 5 C -0.071 4.071 6 C -0.121 4.121 7 C -0.125 4.125 8 C -0.127 4.127 9 C -0.122 4.122 10 N -0.511 5.511 11 C 0.092 3.908 12 C -0.065 4.065 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.123 4.123 17 C -0.096 4.096 18 C 0.026 3.974 19 C 0.228 3.772 20 H 0.078 0.922 21 O -0.558 6.558 22 C -0.574 4.574 23 H 0.051 0.949 24 C 0.084 3.916 25 N -0.861 5.861 26 Si 0.886 3.114 27 H -0.279 1.279 28 H -0.286 1.286 29 H -0.275 1.275 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.039 0.961 46 H 0.056 0.944 47 H 0.337 0.663 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.406 4.912 10.134 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 H 0.057 0.943 4 C -0.055 4.055 5 C -0.089 4.089 6 C -0.139 4.139 7 C -0.144 4.144 8 C -0.145 4.145 9 C -0.141 4.141 10 N -0.235 5.235 11 C -0.036 4.036 12 C -0.066 4.066 13 C -0.117 4.117 14 C -0.132 4.132 15 C -0.139 4.139 16 C -0.141 4.141 17 C -0.114 4.114 18 C -0.100 4.100 19 C 0.170 3.830 20 H 0.096 0.904 21 O -0.359 6.359 22 C -0.612 4.612 23 H 0.070 0.930 24 C -0.122 4.122 25 N -0.497 5.497 26 Si 0.713 3.287 27 H -0.205 1.205 28 H -0.212 1.212 29 H -0.200 1.200 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.180 0.820 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.903 4.219 10.839 18.126 hybrid contribution -0.314 1.074 -1.485 1.860 sum 13.588 5.292 9.353 17.325 Atomic orbital electron populations 1.22350 0.93169 1.03746 1.02151 1.20535 0.95537 0.93567 0.88822 0.94346 1.19716 0.97520 0.94229 0.94029 1.21151 0.95650 0.94104 0.98007 1.21070 0.99965 0.99297 0.93574 1.20907 1.01418 0.94182 0.97858 1.20793 1.01549 0.94521 0.97620 1.20802 1.00990 0.98883 0.93430 1.62120 1.00146 1.57152 1.04039 1.21156 0.88854 0.97187 0.96408 1.19668 0.96640 0.94519 0.95740 1.20901 0.97580 0.99352 0.93825 1.20852 0.97944 0.96180 0.98193 1.20921 1.00438 0.94718 0.97871 1.20989 0.99208 0.99301 0.94632 1.20917 0.96422 0.95139 0.98946 1.23240 0.96077 1.00405 0.90327 1.19789 0.87041 0.78460 0.97734 0.90438 1.86589 1.67100 1.35722 1.46534 1.21698 1.10036 1.20543 1.08963 0.93031 1.24970 0.96593 0.94737 0.95942 1.70031 1.23890 1.23297 1.32511 0.86735 0.79378 0.78408 0.84179 1.20546 1.21210 1.19972 0.93350 0.90450 0.90295 0.84543 0.87189 0.87501 0.87402 0.87460 0.90247 0.95040 0.87316 0.87238 0.87253 0.86946 0.86378 0.94294 0.92565 0.81999 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 7.52 37.16 0.28 -2.48 16 2 C 0.12 1.97 2.07 -68.87 -0.14 1.82 16 3 H 0.04 0.58 7.57 -51.93 -0.39 0.19 16 4 C -0.05 -0.82 2.33 -104.62 -0.24 -1.06 16 5 C -0.07 -1.15 7.53 -39.58 -0.30 -1.44 16 6 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 7 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 8 C -0.13 -1.56 9.01 -39.58 -0.36 -1.92 16 9 C -0.12 -1.62 7.21 -39.58 -0.29 -1.91 16 10 N -0.51 -8.54 3.22 -229.47 -0.74 -9.28 16 11 C 0.09 1.33 4.99 -4.97 -0.02 1.31 16 12 C -0.07 -0.89 3.37 -104.62 -0.35 -1.24 16 13 C -0.10 -1.25 5.72 -39.58 -0.23 -1.47 16 14 C -0.11 -1.33 8.69 -39.58 -0.34 -1.68 16 15 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 16 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 17 C -0.10 -1.28 9.12 -39.59 -0.36 -1.64 16 18 C 0.03 0.51 4.24 -3.82 -0.02 0.49 16 19 C 0.23 5.43 2.40 -27.88 -0.07 5.36 16 20 H 0.08 2.03 4.61 -51.93 -0.24 1.79 16 21 O -0.56 -13.81 12.96 -35.23 -0.46 -14.27 16 22 C -0.57 -15.22 8.72 -34.44 -0.30 -15.52 16 23 H 0.05 1.34 7.75 -52.49 -0.41 0.93 16 24 C 0.08 2.29 5.41 -17.82 -0.10 2.20 16 25 N -0.86 -25.01 13.16 55.43 0.73 -24.28 16 26 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.45 5.18 -51.93 -0.27 1.18 16 32 H 0.08 1.61 6.61 -51.93 -0.34 1.27 16 33 H 0.14 2.62 7.54 -52.49 -0.40 2.22 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.08 1.14 7.73 -51.93 -0.40 0.73 16 39 H 0.03 0.44 7.86 -51.93 -0.41 0.03 16 40 H 0.11 1.35 7.43 -52.49 -0.39 0.96 16 41 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.04 0.75 6.29 -51.93 -0.33 0.42 16 46 H 0.06 1.06 7.52 -51.93 -0.39 0.67 16 47 H 0.34 7.51 9.04 45.56 0.41 7.92 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -28.91 374.76 -10.76 -39.66 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -6.49 Total: 13.66 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -4.43 Total: -27.00 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: -0.01 Total: -33.56 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.46 Total: -14.27 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.91 -10.76 -39.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929366682.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.097 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds