Wall clock time and date at job start Sat Apr 11 2020 01:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46502 * 2 1 4 4 C 1.50702 * 109.47127 * 119.99339 * 2 1 3 5 5 C 1.38238 * 119.99641 * 85.50878 * 4 2 1 6 6 C 1.38232 * 119.99769 * 179.81130 * 5 4 2 7 7 C 1.38239 * 119.99890 * 0.39944 * 6 5 4 8 8 C 1.38230 * 120.00318 * 359.84884 * 7 6 5 9 9 C 1.38234 * 120.00096 * 265.78244 * 4 2 1 10 10 N 1.46890 * 109.47298 * 239.99847 * 2 1 3 11 11 C 1.46902 * 110.99927 * 159.36451 * 10 2 1 12 12 C 1.50707 * 109.47322 * 66.04709 * 11 10 2 13 13 C 1.38236 * 119.99474 * 269.72884 * 12 11 10 14 14 C 1.38232 * 119.99542 * 179.76610 * 13 12 11 15 15 C 1.38235 * 120.00039 * 0.50241 * 14 13 12 16 16 C 1.38230 * 120.00298 * 359.74921 * 15 14 13 17 17 C 1.38225 * 120.00265 * 89.99807 * 12 11 10 18 18 C 1.46900 * 111.00348 * 35.41200 * 10 2 1 19 19 C 1.52998 * 109.46702 * 270.71206 * 18 10 2 20 20 H 1.08997 * 109.47416 * 62.59481 * 19 18 10 21 21 O 1.42904 * 109.47320 * 302.59147 * 19 18 10 22 22 C 1.50702 * 109.46837 * 182.59522 * 19 18 10 23 23 H 1.07994 * 120.00055 * 5.24136 * 22 19 18 24 24 C 1.37884 * 119.99842 * 185.24398 * 22 19 18 25 25 N 1.31513 * 120.00083 * 5.39186 * 24 22 19 26 26 Si 1.86796 * 119.99779 * 185.38961 * 24 22 19 27 27 H 1.48501 * 109.47356 * 90.00101 * 26 24 22 28 28 H 1.48502 * 109.47045 * 210.00062 * 26 24 22 29 29 H 1.48495 * 109.47431 * 330.00040 * 26 24 22 30 30 H 1.08991 * 109.47162 * 305.83915 * 1 2 3 31 31 H 1.08996 * 109.46706 * 65.84224 * 1 2 3 32 32 H 1.09001 * 109.46734 * 185.83882 * 1 2 3 33 33 H 1.07990 * 119.99907 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.99951 * 180.23194 * 6 5 4 35 35 H 1.08007 * 119.99600 * 179.83718 * 7 6 5 36 36 H 1.08002 * 120.00477 * 179.97438 * 8 7 6 37 37 H 1.07995 * 120.00411 * 359.97438 * 9 4 2 38 38 H 1.09004 * 109.47173 * 186.04390 * 11 10 2 39 39 H 1.09001 * 109.47492 * 306.04296 * 11 10 2 40 40 H 1.07995 * 120.00179 * 359.97438 * 13 12 11 41 41 H 1.08008 * 120.00004 * 180.23306 * 14 13 12 42 42 H 1.08006 * 119.99744 * 179.72591 * 15 14 13 43 43 H 1.07995 * 120.00551 * 179.97438 * 16 15 14 44 44 H 1.08000 * 120.00106 * 0.02562 * 17 12 11 45 45 H 1.09001 * 109.46708 * 30.70743 * 18 10 2 46 46 H 1.09001 * 109.47367 * 150.71114 * 18 10 2 47 47 H 0.96693 * 113.99857 * 300.00414 * 21 19 18 48 48 H 0.97001 * 119.99847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 6 2.1744 -2.0853 1.2253 6 6 2.6389 -2.7365 2.3527 7 6 2.9535 -2.0134 3.4881 8 6 2.8067 -0.6389 3.4951 9 6 2.3458 0.0126 2.3664 10 7 2.0197 -0.6925 -1.1993 11 6 3.4053 -0.3081 -1.5003 12 6 4.3134 -0.8036 -0.4044 13 6 4.5783 -0.0008 0.6894 14 6 5.4074 -0.4571 1.6970 15 6 5.9799 -1.7120 1.6058 16 6 5.7193 -2.5127 0.5095 17 6 4.8860 -2.0584 -0.4956 18 6 1.1415 -0.4388 -2.3492 19 6 0.0382 -1.4979 -2.3916 20 1 -0.5735 -1.4216 -1.4926 21 8 0.6279 -2.7979 -2.4575 22 6 -0.8250 -1.2757 -3.6068 23 1 -0.5595 -0.5150 -4.3259 24 6 -1.9537 -2.0436 -3.8004 25 7 -2.3360 -2.8958 -2.8746 26 14 -2.9398 -1.8734 -5.3777 27 1 -2.4202 -2.8260 -6.3916 28 1 -4.3681 -2.1730 -5.1033 29 1 -2.8150 -0.4861 -5.8923 30 1 -0.3633 0.6017 0.8330 31 1 -0.3632 0.4206 -0.9377 32 1 -0.3633 -1.0224 0.1045 33 1 1.9249 -2.6505 0.3396 34 1 2.7534 -3.8104 2.3474 35 1 3.3139 -2.5225 4.3699 36 1 3.0521 -0.0741 4.3823 37 1 2.2311 1.0865 2.3718 38 1 3.7070 -0.7504 -2.4498 39 1 3.4749 0.7776 -1.5668 40 1 4.1347 0.9815 0.7584 41 1 5.6114 0.1686 2.5534 42 1 6.6313 -2.0667 2.3909 43 1 6.1669 -3.4929 0.4381 44 1 4.6828 -2.6836 -1.3524 45 1 0.6927 0.5498 -2.2524 46 1 1.7247 -0.4847 -3.2690 47 1 1.1871 -2.9371 -3.2340 48 1 -3.1299 -3.4363 -3.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929366682.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:28 Heat of formation + Delta-G solvation = 10.677269 kcal Electronic energy + Delta-G solvation = -29127.011573 eV Core-core repulsion = 25532.784765 eV Total energy + Delta-G solvation = -3594.226808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.30372 -39.17293 -38.87593 -36.74917 -34.20907 -33.52278 -32.54905 -31.84387 -31.18292 -30.02059 -29.56477 -26.98327 -25.67921 -23.90229 -23.44050 -23.02952 -22.18491 -21.82393 -20.73465 -18.84580 -17.76220 -17.61288 -16.83781 -16.68394 -16.47998 -16.21041 -15.84224 -15.72728 -15.54943 -15.40909 -14.74450 -14.49502 -14.25783 -14.15426 -13.95936 -13.82932 -13.71752 -13.29815 -13.20157 -13.13075 -12.90631 -12.83544 -12.76181 -12.46722 -12.21140 -12.11868 -11.94470 -11.76526 -11.66106 -11.57623 -11.44009 -10.85917 -10.51355 -10.08840 -9.86633 -9.74186 -9.25326 -9.02478 -8.84668 -8.10912 -6.33745 0.58317 0.63997 0.80855 0.92615 1.40011 1.41086 1.50712 2.39856 2.89429 3.16420 3.17053 3.35705 3.89921 4.01237 4.09418 4.14647 4.28748 4.33284 4.35285 4.37739 4.40657 4.44661 4.46353 4.53057 4.55292 4.68446 4.75130 4.79506 4.85563 4.87259 4.94967 4.99920 5.07228 5.14386 5.30817 5.32194 5.36236 5.38668 5.44577 5.65728 5.76527 5.79784 5.82694 5.87498 5.90448 5.95600 6.01657 6.11763 6.29491 6.34765 6.39616 6.44885 6.83410 7.40517 7.70460 8.93974 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018980 B = 0.003938 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.919409 B = 7108.254379 C = 7514.677317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.127 3.873 3 H 0.055 0.945 4 C -0.060 4.060 5 C -0.086 4.086 6 C -0.130 4.130 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.121 4.121 10 N -0.519 5.519 11 C 0.093 3.907 12 C -0.075 4.075 13 C -0.101 4.101 14 C -0.112 4.112 15 C -0.119 4.119 16 C -0.129 4.129 17 C -0.111 4.111 18 C 0.044 3.956 19 C 0.229 3.771 20 H 0.050 0.950 21 O -0.574 6.574 22 C -0.585 4.585 23 H 0.054 0.946 24 C 0.031 3.969 25 N -0.902 5.902 26 Si 0.952 3.048 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.265 1.265 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.105 0.895 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.346 0.654 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.114 6.554 11.874 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.019 3.981 3 H 0.073 0.927 4 C -0.060 4.060 5 C -0.105 4.105 6 C -0.148 4.148 7 C -0.139 4.139 8 C -0.136 4.136 9 C -0.140 4.140 10 N -0.243 5.243 11 C -0.034 4.034 12 C -0.075 4.075 13 C -0.119 4.119 14 C -0.130 4.130 15 C -0.137 4.137 16 C -0.147 4.147 17 C -0.130 4.130 18 C -0.083 4.083 19 C 0.172 3.828 20 H 0.068 0.932 21 O -0.377 6.377 22 C -0.623 4.623 23 H 0.073 0.927 24 C -0.171 4.171 25 N -0.540 5.540 26 Si 0.778 3.222 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.189 1.189 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.123 0.877 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.189 0.811 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.630 5.873 12.570 20.899 hybrid contribution -0.797 0.529 -1.955 2.176 sum 14.833 6.402 10.615 19.331 Atomic orbital electron populations 1.22200 0.94824 1.01415 1.01992 1.20531 0.94072 0.94477 0.89002 0.92707 1.19579 0.98437 0.93692 0.94327 1.20816 0.97709 0.94585 0.97375 1.21130 1.00295 0.99575 0.93810 1.21171 1.00365 0.94598 0.97717 1.21139 0.99888 0.94433 0.98132 1.21013 1.00290 0.99832 0.92836 1.61983 1.00894 1.58051 1.03366 1.21152 0.87532 0.97738 0.96940 1.19570 0.96952 0.94933 0.96080 1.20978 0.97869 0.99402 0.93668 1.21096 0.97115 0.96392 0.98378 1.21202 1.00175 0.94492 0.97877 1.21176 0.98871 1.00073 0.94551 1.20942 0.97448 0.95275 0.99346 1.22796 0.95258 0.98517 0.91755 1.19643 0.88176 0.79329 0.95676 0.93208 1.86546 1.67407 1.36635 1.47099 1.22124 1.10333 1.20167 1.09677 0.92749 1.25789 0.97841 0.94475 0.99000 1.70179 1.24596 1.24622 1.34610 0.85676 0.77667 0.78741 0.80160 1.20109 1.21105 1.18922 0.91238 0.92250 0.94110 0.88808 0.87186 0.84997 0.84236 0.85505 0.90691 0.94036 0.86746 0.85075 0.84978 0.85751 0.87652 0.94259 0.92229 0.81061 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 7.52 71.98 0.54 -4.81 16 2 C 0.13 4.04 2.07 44.17 0.09 4.14 16 3 H 0.06 1.56 7.57 -2.39 -0.02 1.55 16 4 C -0.06 -1.75 2.33 -19.86 -0.05 -1.80 16 5 C -0.09 -2.85 7.53 22.27 0.17 -2.68 16 6 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 7 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 8 C -0.12 -2.42 9.01 22.27 0.20 -2.22 16 9 C -0.12 -2.85 7.21 22.27 0.16 -2.69 16 10 N -0.52 -17.88 3.22 -879.90 -2.83 -20.71 16 11 C 0.09 2.73 4.99 85.56 0.43 3.16 16 12 C -0.07 -2.01 3.37 -19.87 -0.07 -2.07 16 13 C -0.10 -2.34 5.72 22.27 0.13 -2.21 16 14 C -0.11 -2.26 8.69 22.27 0.19 -2.06 16 15 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 16 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 17 C -0.11 -3.01 9.12 22.27 0.20 -2.81 16 18 C 0.04 1.77 4.24 86.30 0.37 2.13 16 19 C 0.23 11.49 2.40 29.85 0.07 11.56 16 20 H 0.05 2.80 4.61 -2.39 -0.01 2.79 16 21 O -0.57 -30.01 12.96 -148.98 -1.93 -31.95 16 22 C -0.58 -31.83 8.72 25.60 0.22 -31.61 16 23 H 0.05 2.86 7.75 -2.91 -0.02 2.84 16 24 C 0.03 1.74 5.41 84.66 0.46 2.20 16 25 N -0.90 -54.34 13.16 21.45 0.28 -54.05 16 26 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 28 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 29 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.06 2.33 5.18 -2.39 -0.01 2.32 16 32 H 0.04 1.78 6.61 -2.39 -0.02 1.76 16 33 H 0.09 3.89 7.54 -2.92 -0.02 3.86 16 34 H 0.11 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.07 2.20 7.73 -2.38 -0.02 2.18 16 39 H 0.04 1.12 7.86 -2.39 -0.02 1.10 16 40 H 0.11 2.51 7.43 -2.91 -0.02 2.49 16 41 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 45 H 0.04 1.54 6.29 -2.39 -0.02 1.53 16 46 H 0.06 2.29 7.52 -2.39 -0.02 2.27 16 47 H 0.35 16.21 9.04 -74.06 -0.67 15.55 16 48 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -64.54 374.76 1.84 -62.70 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: 0.28 Total: 41.02 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 4.01 Total: -42.60 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -2.55 Total: -74.76 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.93 Total: -31.95 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -64.54 1.84 -62.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929366682.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.376 kcal (2) G-P(sol) polarization free energy of solvation -64.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds