Wall clock time and date at job start Sat Apr 11 2020 01:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47207 * 2 1 4 4 C 1.53004 * 109.47318 * 119.99949 * 2 1 3 5 5 N 1.46898 * 109.47380 * 175.42420 * 4 2 1 6 6 C 1.46895 * 111.00301 * 288.45839 * 5 4 2 7 7 C 1.52999 * 109.47469 * 163.70475 * 6 5 4 8 8 H 1.09001 * 109.46940 * 58.35478 * 7 6 5 9 9 O 1.42903 * 109.46652 * 298.35822 * 7 6 5 10 10 C 1.50694 * 109.47103 * 178.36002 * 7 6 5 11 11 H 1.07998 * 120.00549 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99947 * 180.02562 * 10 7 6 13 13 N 1.31515 * 119.99947 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00289 * 179.97438 * 12 10 7 15 15 H 1.48504 * 109.47070 * 60.00120 * 14 12 10 16 16 H 1.48498 * 109.47145 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46984 * 300.00157 * 14 12 10 18 18 C 1.46892 * 110.99704 * 164.50019 * 5 4 2 19 19 C 1.53003 * 109.47513 * 293.95537 * 18 5 4 20 20 H 1.08999 * 109.47061 * 60.00104 * 19 18 5 21 21 O 1.42895 * 109.46939 * 300.00277 * 19 18 5 22 22 C 1.50696 * 109.47061 * 180.02562 * 19 18 5 23 23 C 1.38246 * 119.97963 * 84.72743 * 22 19 18 24 24 C 1.38196 * 120.02885 * 179.72223 * 23 22 19 25 25 C 1.38462 * 119.97101 * 0.52859 * 24 23 22 26 26 F 1.35100 * 120.02385 * 179.72345 * 25 24 23 27 27 C 1.38462 * 119.95001 * 359.74569 * 25 24 23 28 28 C 1.38191 * 119.97476 * 359.97438 * 27 25 24 29 29 H 1.09005 * 109.46951 * 300.00457 * 1 2 3 30 30 H 1.09000 * 109.47359 * 59.99537 * 1 2 3 31 31 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46911 * 240.00283 * 2 1 3 33 33 H 1.09000 * 109.46953 * 60.00309 * 3 2 1 34 34 H 1.08998 * 109.46626 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47155 * 299.99713 * 3 2 1 36 36 H 1.09008 * 109.46709 * 55.42478 * 4 2 1 37 37 H 1.09004 * 109.46781 * 295.43097 * 4 2 1 38 38 H 1.08996 * 109.46897 * 283.70891 * 6 5 4 39 39 H 1.09004 * 109.47073 * 43.70223 * 6 5 4 40 40 H 0.96695 * 114.00051 * 304.87576 * 9 7 6 41 41 H 0.97003 * 120.00308 * 180.02562 * 13 12 10 42 42 H 1.08994 * 109.47287 * 53.95964 * 18 5 4 43 43 H 1.09008 * 109.46788 * 173.95665 * 18 5 4 44 44 H 0.96709 * 114.00190 * 299.99425 * 21 19 18 45 45 H 1.08000 * 119.98177 * 359.97438 * 23 22 19 46 46 H 1.08001 * 120.01411 * 180.29420 * 24 23 22 47 47 H 1.07998 * 120.01252 * 179.97438 * 27 25 24 48 48 H 1.07996 * 119.99189 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5048 -0.8177 1.1953 6 6 3.9316 -1.7855 0.1759 7 6 5.4134 -1.5733 -0.1402 8 1 5.9995 -1.6877 0.7717 9 8 5.6045 -0.2589 -0.6674 10 6 5.8612 -2.5921 -1.1563 11 1 5.1592 -3.3186 -1.5381 12 6 7.1673 -2.5975 -1.5977 13 7 8.0226 -1.7138 -1.1317 14 14 7.7226 -3.8608 -2.8567 15 1 6.9246 -3.7051 -4.0994 16 1 9.1609 -3.6548 -3.1636 17 1 7.5236 -5.2265 -2.3085 18 6 4.0586 -1.1611 2.5118 19 6 3.8052 -0.0102 3.4877 20 1 2.7324 0.1601 3.5780 21 8 4.4363 1.1755 3.0000 22 6 4.3739 -0.3623 4.8381 23 6 5.7095 -0.1285 5.1075 24 6 6.2308 -0.4457 6.3475 25 6 5.4172 -1.0080 7.3165 26 9 5.9269 -1.3237 8.5272 27 6 4.0809 -1.2470 7.0437 28 6 3.5606 -0.9236 5.8050 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6112 -1.7226 1.2912 37 1 1.7450 -0.1623 2.1374 38 1 3.7813 -2.7979 0.5507 39 1 3.3426 -1.6423 -0.7301 40 1 5.0553 -0.0607 -1.4382 41 1 8.9415 -1.7173 -1.4425 42 1 3.5772 -2.0655 2.8838 43 1 5.1315 -1.3313 2.4215 44 1 5.3944 1.0963 2.8948 45 1 6.3449 0.3059 4.3499 46 1 7.2731 -0.2586 6.5593 47 1 3.4455 -1.6859 7.7987 48 1 2.5183 -1.1095 5.5921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929707302.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:38 Heat of formation + Delta-G solvation = -126.007508 kcal Electronic energy + Delta-G solvation = -28677.549993 eV Core-core repulsion = 24646.626864 eV Total energy + Delta-G solvation = -4030.923129 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.01367 -39.78583 -38.19677 -36.28634 -35.39355 -33.63594 -32.06617 -31.50062 -31.10436 -28.77229 -27.53530 -26.77159 -25.56470 -24.13840 -23.18267 -22.21463 -21.00947 -20.51300 -19.23771 -17.98738 -16.97234 -16.83705 -16.58811 -15.72486 -15.54804 -15.39951 -14.98599 -14.66014 -14.54622 -14.29082 -13.99457 -13.84031 -13.67320 -13.38640 -13.16010 -13.12257 -12.94036 -12.81083 -12.26983 -12.12337 -12.06131 -11.75793 -11.47078 -11.22993 -11.12727 -11.01620 -10.88994 -10.84201 -10.66114 -10.57906 -10.41247 -10.13185 -10.04030 -9.77191 -9.25691 -9.00268 -8.66389 -8.54488 -8.06503 -7.58438 -5.99534 -4.17367 0.97088 1.08473 3.28391 3.34089 3.35518 3.40462 4.10110 4.18927 4.41356 4.53636 4.64919 4.72067 4.84758 5.01001 5.08854 5.13705 5.22604 5.28065 5.29786 5.40251 5.49633 5.67603 5.69496 5.75276 5.82199 5.89149 5.90164 5.96205 6.03040 6.06289 6.10408 6.11424 6.15669 6.25647 6.30672 6.42259 6.45860 6.59109 6.63172 6.72985 6.83339 6.93346 7.50277 7.61487 7.78128 7.88456 7.93333 8.23021 8.85434 9.47809 9.64693 11.04458 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009025 B = 0.004009 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.880837 B = 6983.249110 C = 9237.332808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.133 4.133 4 C 0.057 3.943 5 N -0.510 5.510 6 C 0.028 3.972 7 C 0.243 3.757 8 H 0.050 0.950 9 O -0.550 6.550 10 C -0.575 4.575 11 H 0.052 0.948 12 C 0.083 3.917 13 N -0.858 5.858 14 Si 0.886 3.114 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.029 3.971 19 C 0.156 3.844 20 H 0.102 0.898 21 O -0.537 6.537 22 C -0.120 4.120 23 C -0.077 4.077 24 C -0.148 4.148 25 C 0.091 3.909 26 F -0.143 7.143 27 C -0.154 4.154 28 C -0.084 4.084 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.022 0.978 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.340 0.660 41 H 0.260 0.740 42 H 0.032 0.968 43 H 0.087 0.913 44 H 0.376 0.624 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 3.365 12.328 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.191 4.191 4 C -0.071 4.071 5 N -0.234 5.234 6 C -0.100 4.100 7 C 0.185 3.815 8 H 0.068 0.932 9 O -0.351 6.351 10 C -0.614 4.614 11 H 0.070 0.930 12 C -0.124 4.124 13 N -0.494 5.494 14 Si 0.713 3.287 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.099 4.099 19 C 0.095 3.905 20 H 0.120 0.880 21 O -0.342 6.342 22 C -0.121 4.121 23 C -0.095 4.095 24 C -0.167 4.167 25 C 0.072 3.928 26 F -0.122 7.122 27 C -0.172 4.172 28 C -0.102 4.102 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.182 0.818 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.151 0.849 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.591 4.137 12.754 17.087 hybrid contribution 0.264 -2.186 -0.619 2.288 sum -10.327 1.951 12.135 16.053 Atomic orbital electron populations 1.21833 0.96110 1.01020 1.01386 1.21084 0.93989 0.97663 0.98222 1.21672 1.03556 0.94205 0.99647 1.22209 0.88896 0.97757 0.98263 1.61908 1.07303 1.49783 1.04376 1.23174 1.01656 0.91537 0.93604 1.19228 0.86599 0.81671 0.94042 0.93215 1.86582 1.66994 1.33887 1.47679 1.21634 0.95824 1.17006 1.26916 0.93010 1.24977 0.96617 0.94910 0.95846 1.70055 1.03999 1.33478 1.41834 0.86795 0.77701 0.82030 0.82161 1.20172 1.21200 1.20301 1.22775 1.02069 0.95210 0.89877 1.20772 0.97033 0.85992 0.86654 0.88036 1.86593 1.25673 1.34416 1.87543 1.20822 0.94414 0.99349 0.97490 1.20867 0.94747 0.97801 0.96126 1.21148 1.00601 1.01514 0.93457 1.17740 0.92677 1.01064 0.81315 1.91489 1.87572 1.90854 1.42258 1.21091 0.93865 1.03586 0.98702 1.20834 1.00009 0.97427 0.91955 0.93086 0.92829 0.93323 0.91114 0.93806 0.90098 0.94318 0.96022 0.91610 0.95784 0.91531 0.81755 0.93021 0.94972 0.89448 0.77532 0.84583 0.84592 0.84856 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.09 -1.22 2.93 -90.62 -0.27 -1.48 16 3 C -0.13 -1.86 9.08 37.16 0.34 -1.52 16 4 C 0.06 0.79 4.23 -3.82 -0.02 0.78 16 5 N -0.51 -8.30 3.62 -234.63 -0.85 -9.15 16 6 C 0.03 0.53 4.37 -3.83 -0.02 0.52 16 7 C 0.24 5.82 2.85 -27.89 -0.08 5.74 16 8 H 0.05 1.31 6.56 -51.93 -0.34 0.97 16 9 O -0.55 -13.57 12.63 -35.23 -0.45 -14.02 16 10 C -0.58 -15.39 8.79 -34.44 -0.30 -15.69 16 11 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 12 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 13 N -0.86 -24.81 12.84 55.43 0.71 -24.09 16 14 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.03 0.44 4.45 -3.83 -0.02 0.42 16 19 C 0.16 1.99 3.12 -27.88 -0.09 1.90 16 20 H 0.10 1.24 6.20 -51.93 -0.32 0.91 16 21 O -0.54 -7.75 13.00 -35.23 -0.46 -8.21 16 22 C -0.12 -1.41 5.00 -104.62 -0.52 -1.93 16 23 C -0.08 -0.90 9.32 -39.59 -0.37 -1.27 16 24 C -0.15 -1.68 10.03 -39.51 -0.40 -2.07 16 25 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 26 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 27 C -0.15 -1.60 10.03 -39.52 -0.40 -2.00 16 28 C -0.08 -0.88 9.68 -39.59 -0.38 -1.26 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.05 6.40 -51.93 -0.33 0.72 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.35 7.74 -51.93 -0.40 0.94 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.30 8.06 -51.92 -0.42 -0.12 16 37 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 38 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 39 H 0.07 1.28 6.21 -51.93 -0.32 0.96 16 40 H 0.34 7.66 9.02 45.56 0.41 8.07 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 43 H 0.09 1.51 6.40 -51.92 -0.33 1.17 16 44 H 0.38 4.96 7.39 45.56 0.34 5.30 16 45 H 0.14 1.45 6.62 -52.49 -0.35 1.10 16 46 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -29.90 389.64 -8.85 -38.75 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -6.14 Total: 12.83 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.56 Total: -16.18 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: -0.14 Total: -33.24 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.90 Total: -22.22 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.90 -8.85 -38.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929707302.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.256 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds