Wall clock time and date at job start Sat Apr 11 2020 01:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47207 * 2 1 4 4 C 1.53004 * 109.47318 * 119.99949 * 2 1 3 5 5 N 1.46898 * 109.47380 * 175.42420 * 4 2 1 6 6 C 1.46895 * 111.00301 * 288.45839 * 5 4 2 7 7 C 1.52999 * 109.47469 * 163.70475 * 6 5 4 8 8 H 1.09001 * 109.46940 * 58.35478 * 7 6 5 9 9 O 1.42903 * 109.46652 * 298.35822 * 7 6 5 10 10 C 1.50694 * 109.47103 * 178.36002 * 7 6 5 11 11 H 1.07998 * 120.00549 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99947 * 180.02562 * 10 7 6 13 13 N 1.31515 * 119.99947 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00289 * 179.97438 * 12 10 7 15 15 H 1.48504 * 109.47070 * 60.00120 * 14 12 10 16 16 H 1.48498 * 109.47145 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46984 * 300.00157 * 14 12 10 18 18 C 1.46892 * 110.99704 * 164.50019 * 5 4 2 19 19 C 1.53003 * 109.47513 * 293.95537 * 18 5 4 20 20 H 1.08999 * 109.47061 * 60.00104 * 19 18 5 21 21 O 1.42895 * 109.46939 * 300.00277 * 19 18 5 22 22 C 1.50696 * 109.47061 * 180.02562 * 19 18 5 23 23 C 1.38246 * 119.97963 * 84.72743 * 22 19 18 24 24 C 1.38196 * 120.02885 * 179.72223 * 23 22 19 25 25 C 1.38462 * 119.97101 * 0.52859 * 24 23 22 26 26 F 1.35100 * 120.02385 * 179.72345 * 25 24 23 27 27 C 1.38462 * 119.95001 * 359.74569 * 25 24 23 28 28 C 1.38191 * 119.97476 * 359.97438 * 27 25 24 29 29 H 1.09005 * 109.46951 * 300.00457 * 1 2 3 30 30 H 1.09000 * 109.47359 * 59.99537 * 1 2 3 31 31 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46911 * 240.00283 * 2 1 3 33 33 H 1.09000 * 109.46953 * 60.00309 * 3 2 1 34 34 H 1.08998 * 109.46626 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47155 * 299.99713 * 3 2 1 36 36 H 1.09008 * 109.46709 * 55.42478 * 4 2 1 37 37 H 1.09004 * 109.46781 * 295.43097 * 4 2 1 38 38 H 1.08996 * 109.46897 * 283.70891 * 6 5 4 39 39 H 1.09004 * 109.47073 * 43.70223 * 6 5 4 40 40 H 0.96695 * 114.00051 * 304.87576 * 9 7 6 41 41 H 0.97003 * 120.00308 * 180.02562 * 13 12 10 42 42 H 1.08994 * 109.47287 * 53.95964 * 18 5 4 43 43 H 1.09008 * 109.46788 * 173.95665 * 18 5 4 44 44 H 0.96709 * 114.00190 * 299.99425 * 21 19 18 45 45 H 1.08000 * 119.98177 * 359.97438 * 23 22 19 46 46 H 1.08001 * 120.01411 * 180.29420 * 24 23 22 47 47 H 1.07998 * 120.01252 * 179.97438 * 27 25 24 48 48 H 1.07996 * 119.99189 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5048 -0.8177 1.1953 6 6 3.9316 -1.7855 0.1759 7 6 5.4134 -1.5733 -0.1402 8 1 5.9995 -1.6877 0.7717 9 8 5.6045 -0.2589 -0.6674 10 6 5.8612 -2.5921 -1.1563 11 1 5.1592 -3.3186 -1.5381 12 6 7.1673 -2.5975 -1.5977 13 7 8.0226 -1.7138 -1.1317 14 14 7.7226 -3.8608 -2.8567 15 1 6.9246 -3.7051 -4.0994 16 1 9.1609 -3.6548 -3.1636 17 1 7.5236 -5.2265 -2.3085 18 6 4.0586 -1.1611 2.5118 19 6 3.8052 -0.0102 3.4877 20 1 2.7324 0.1601 3.5780 21 8 4.4363 1.1755 3.0000 22 6 4.3739 -0.3623 4.8381 23 6 5.7095 -0.1285 5.1075 24 6 6.2308 -0.4457 6.3475 25 6 5.4172 -1.0080 7.3165 26 9 5.9269 -1.3237 8.5272 27 6 4.0809 -1.2470 7.0437 28 6 3.5606 -0.9236 5.8050 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6112 -1.7226 1.2912 37 1 1.7450 -0.1623 2.1374 38 1 3.7813 -2.7979 0.5507 39 1 3.3426 -1.6423 -0.7301 40 1 5.0553 -0.0607 -1.4382 41 1 8.9415 -1.7173 -1.4425 42 1 3.5772 -2.0655 2.8838 43 1 5.1315 -1.3313 2.4215 44 1 5.3944 1.0963 2.8948 45 1 6.3449 0.3059 4.3499 46 1 7.2731 -0.2586 6.5593 47 1 3.4455 -1.6859 7.7987 48 1 2.5183 -1.1095 5.5921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929707302.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:37 Heat of formation + Delta-G solvation = -146.120908 kcal Electronic energy + Delta-G solvation = -28678.422176 eV Core-core repulsion = 24646.626864 eV Total energy + Delta-G solvation = -4031.795312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.92831 -40.77895 -39.41488 -37.50325 -36.98901 -34.92779 -34.16114 -32.47653 -31.99952 -30.41344 -28.74628 -27.79083 -27.16361 -25.44750 -24.04364 -23.59241 -22.18213 -21.87549 -20.48875 -18.95516 -18.84197 -17.92941 -17.53443 -16.81376 -16.77350 -16.60964 -16.54905 -16.14163 -15.82466 -15.59466 -15.28064 -15.09098 -14.92700 -14.50857 -14.48884 -14.29358 -14.05319 -13.78497 -13.64778 -13.21169 -13.16315 -12.99128 -12.89603 -12.83043 -12.73367 -12.49475 -12.34726 -12.13696 -11.97988 -11.84873 -11.66745 -11.58391 -11.24838 -10.92542 -10.89323 -10.62789 -10.09932 -10.00009 -9.58253 -8.94204 -8.09318 -6.34118 0.07243 0.24328 1.41027 1.41718 1.49649 2.39811 2.51398 3.00221 3.17154 3.25408 3.59741 3.71531 3.78174 3.91598 3.94128 4.06233 4.15538 4.23549 4.33150 4.33700 4.37128 4.47453 4.49096 4.65908 4.70811 4.78481 4.84094 4.89258 4.95860 4.96823 4.97450 5.00744 5.11813 5.13042 5.19346 5.22312 5.25328 5.38677 5.51570 5.58404 5.64501 5.74461 5.83491 5.87374 6.08343 6.28621 6.39752 6.78748 6.82625 7.39638 7.70196 8.94270 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009025 B = 0.004009 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.880837 B = 6983.249110 C = 9237.332808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.058 3.942 5 N -0.517 5.517 6 C 0.047 3.953 7 C 0.246 3.754 8 H 0.019 0.981 9 O -0.563 6.563 10 C -0.590 4.590 11 H 0.053 0.947 12 C 0.032 3.968 13 N -0.895 5.895 14 Si 0.951 3.049 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.032 3.968 19 C 0.168 3.832 20 H 0.117 0.883 21 O -0.551 6.551 22 C -0.129 4.129 23 C -0.090 4.090 24 C -0.157 4.157 25 C 0.077 3.923 26 F -0.148 7.148 27 C -0.151 4.151 28 C -0.081 4.081 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.028 0.972 37 H 0.083 0.917 38 H 0.018 0.982 39 H 0.069 0.931 40 H 0.347 0.653 41 H 0.260 0.740 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.378 0.622 45 H 0.136 0.864 46 H 0.145 0.855 47 H 0.158 0.842 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.005 2.853 12.693 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.183 4.183 4 C -0.069 4.069 5 N -0.240 5.240 6 C -0.081 4.081 7 C 0.188 3.812 8 H 0.037 0.963 9 O -0.365 6.365 10 C -0.628 4.628 11 H 0.072 0.928 12 C -0.171 4.171 13 N -0.532 5.532 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.096 4.096 19 C 0.108 3.892 20 H 0.134 0.866 21 O -0.357 6.357 22 C -0.131 4.131 23 C -0.108 4.108 24 C -0.175 4.175 25 C 0.058 3.942 26 F -0.127 7.127 27 C -0.170 4.170 28 C -0.099 4.099 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.036 0.964 39 H 0.087 0.913 40 H 0.191 0.809 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.227 0.773 45 H 0.154 0.846 46 H 0.163 0.837 47 H 0.175 0.825 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.797 3.621 13.122 18.683 hybrid contribution 0.939 -1.999 -0.694 2.315 sum -11.858 1.622 12.428 17.254 Atomic orbital electron populations 1.21767 0.93774 1.01779 1.02364 1.21075 0.95880 0.96813 0.97125 1.21567 1.01366 0.94926 1.00438 1.22290 0.86872 0.98457 0.99323 1.61818 1.09263 1.48577 1.04327 1.22725 0.98507 0.91955 0.94868 1.19043 0.89137 0.80827 0.92168 0.96319 1.86536 1.67636 1.34169 1.48185 1.22068 0.96105 1.17471 1.27207 0.92833 1.25778 0.96798 0.96747 0.97788 1.70192 1.04237 1.35422 1.43397 0.85753 0.77170 0.79660 0.79815 1.19359 1.21069 1.19571 1.22749 1.00216 0.96765 0.89883 1.20701 0.97624 0.84444 0.86437 0.86589 1.86559 1.26007 1.35335 1.87789 1.20786 0.94640 1.00302 0.97323 1.20969 0.95121 0.98262 0.96406 1.21291 1.01290 1.01580 0.93374 1.17978 0.93461 1.01549 0.81204 1.91474 1.87746 1.90953 1.42516 1.21375 0.93530 1.02822 0.99231 1.21119 1.01093 0.96293 0.91382 0.91835 0.92169 0.92685 0.92949 0.93081 0.93297 0.93442 0.95397 0.89878 0.96373 0.91298 0.80898 0.93153 0.94081 0.92459 0.77322 0.84627 0.83670 0.82480 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 2 C -0.09 -2.26 2.93 -10.79 -0.03 -2.30 16 3 C -0.13 -3.35 9.08 71.98 0.65 -2.69 16 4 C 0.06 1.51 4.23 86.30 0.37 1.87 16 5 N -0.52 -16.67 3.62 -896.23 -3.24 -19.91 16 6 C 0.05 1.86 4.37 86.30 0.38 2.23 16 7 C 0.25 12.17 2.85 29.85 0.09 12.25 16 8 H 0.02 1.05 6.56 -2.39 -0.02 1.04 16 9 O -0.56 -28.64 12.63 -148.98 -1.88 -30.53 16 10 C -0.59 -32.01 8.79 25.60 0.22 -31.79 16 11 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 12 C 0.03 1.75 5.40 84.65 0.46 2.21 16 13 N -0.90 -52.96 12.84 21.45 0.28 -52.68 16 14 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 C 0.03 0.97 4.45 86.31 0.38 1.35 16 19 C 0.17 4.13 3.12 29.85 0.09 4.22 16 20 H 0.12 2.52 6.20 -2.39 -0.01 2.51 16 21 O -0.55 -15.91 13.00 -148.98 -1.94 -17.84 16 22 C -0.13 -2.92 5.00 -19.86 -0.10 -3.02 16 23 C -0.09 -2.09 9.32 22.26 0.21 -1.89 16 24 C -0.16 -3.52 10.03 22.31 0.22 -3.30 16 25 C 0.08 1.72 7.30 22.38 0.16 1.89 16 26 F -0.15 -3.48 17.27 44.97 0.78 -2.70 16 27 C -0.15 -2.83 10.03 22.31 0.22 -2.61 16 28 C -0.08 -1.50 9.68 22.26 0.22 -1.29 16 29 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.51 6.40 -2.39 -0.02 1.50 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.62 7.74 -2.39 -0.02 1.60 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.03 0.71 8.06 -2.38 -0.02 0.69 16 37 H 0.08 1.89 5.95 -2.39 -0.01 1.88 16 38 H 0.02 0.72 8.05 -2.39 -0.02 0.70 16 39 H 0.07 2.65 6.21 -2.38 -0.01 2.64 16 40 H 0.35 16.10 9.02 -74.06 -0.67 15.43 16 41 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 43 H 0.06 2.07 6.40 -2.38 -0.02 2.05 16 44 H 0.38 10.44 7.39 -74.05 -0.55 9.90 16 45 H 0.14 3.06 6.62 -2.91 -0.02 3.04 16 46 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 47 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 48 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -64.48 389.64 -0.02 -64.50 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -0.24 Total: 38.87 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 4.21 Total: -24.84 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -2.96 Total: -72.60 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -3.82 Total: -48.37 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -64.48 -0.02 -64.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929707302.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.623 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds