Wall clock time and date at job start Sat Apr 11 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47052 * 2 1 4 4 C 1.50700 * 109.47034 * 120.00255 * 2 1 3 5 5 C 1.38313 * 119.87988 * 330.66019 * 4 2 1 6 6 C 1.38023 * 120.12261 * 179.97438 * 5 4 2 7 7 C 1.39336 * 119.87503 * 0.02669 * 6 5 4 8 8 C 1.48390 * 120.11785 * 179.97438 * 7 6 5 9 9 C 1.39342 * 120.12141 * 180.02562 * 8 7 6 10 10 C 1.38010 * 119.88078 * 179.97438 * 9 8 7 11 11 C 1.38324 * 120.12285 * 0.02562 * 10 9 8 12 12 C 1.38324 * 120.24097 * 0.25099 * 11 10 9 13 13 C 1.38023 * 120.12222 * 359.49115 * 12 11 10 14 14 C 1.39336 * 119.76064 * 0.27367 * 7 6 5 15 15 C 1.38027 * 119.87256 * 359.40439 * 14 7 6 16 16 N 1.46902 * 109.46993 * 240.00450 * 2 1 3 17 17 C 1.46897 * 110.99917 * 308.10963 * 16 2 1 18 18 C 1.46897 * 111.00138 * 72.06456 * 16 2 1 19 19 C 1.53001 * 109.47052 * 169.99541 * 18 16 2 20 20 H 1.09000 * 109.46704 * 60.00620 * 19 18 16 21 21 O 1.42895 * 109.47475 * 300.00341 * 19 18 16 22 22 C 1.50700 * 109.47021 * 179.97438 * 19 18 16 23 23 H 1.07995 * 120.00274 * 0.02562 * 22 19 18 24 24 C 1.37881 * 119.99726 * 180.02562 * 22 19 18 25 25 N 1.31513 * 120.00177 * 0.02562 * 24 22 19 26 26 Si 1.86801 * 119.99578 * 180.02562 * 24 22 19 27 27 H 1.48496 * 109.47226 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.46992 * 120.00237 * 26 24 22 29 29 H 1.48502 * 109.47332 * 239.99924 * 26 24 22 30 30 H 1.08992 * 109.46862 * 299.99570 * 1 2 3 31 31 H 1.09001 * 109.46905 * 59.99530 * 1 2 3 32 32 H 1.09001 * 109.46595 * 179.97438 * 1 2 3 33 33 H 1.08004 * 119.94234 * 0.02562 * 5 4 2 34 34 H 1.07995 * 120.06113 * 180.02562 * 6 5 4 35 35 H 1.08003 * 120.05967 * 359.96007 * 9 8 7 36 36 H 1.08001 * 119.94327 * 180.02562 * 10 9 8 37 37 H 1.07992 * 119.87954 * 179.97438 * 11 10 9 38 38 H 1.08004 * 119.93951 * 179.75018 * 12 11 10 39 39 H 1.07998 * 120.06346 * 180.23626 * 13 12 11 40 40 H 1.07995 * 120.05929 * 179.70260 * 14 7 6 41 41 H 1.08004 * 119.93378 * 180.31992 * 15 14 7 42 42 H 1.08996 * 109.47139 * 66.56300 * 17 16 2 43 43 H 1.09004 * 109.47479 * 186.56492 * 17 16 2 44 44 H 1.09001 * 109.47441 * 306.56322 * 17 16 2 45 45 H 1.08994 * 109.47186 * 290.00316 * 18 16 2 46 46 H 1.09000 * 109.46860 * 50.00256 * 18 16 2 47 47 H 0.96694 * 114.00171 * 300.00035 * 21 19 18 48 48 H 0.96998 * 119.99444 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.2764 -0.7007 2.3886 6 6 1.7314 -1.3502 3.5183 7 6 2.9550 -2.0161 3.4906 8 6 3.4496 -2.7157 4.7022 9 6 4.6735 -3.3812 4.6747 10 6 5.1290 -4.0297 5.8045 11 6 4.3728 -4.0204 6.9627 12 6 3.1544 -3.3662 6.9939 13 6 2.6917 -2.7098 5.8714 14 6 3.7154 -2.0174 2.3230 15 6 3.2476 -1.3703 1.1972 16 7 2.0197 -0.6924 -1.1995 17 6 1.3972 -2.0161 -1.3342 18 6 1.7970 0.1191 -2.4036 19 6 2.5344 -0.5111 -3.5868 20 1 2.1575 -1.5202 -3.7540 21 8 3.9335 -0.5663 -3.3016 22 6 2.3054 0.3210 -4.8222 23 1 1.6954 1.2106 -4.7687 24 6 2.8747 -0.0534 -6.0209 25 7 3.6171 -1.1370 -6.0862 26 14 2.5915 0.9785 -7.5520 27 1 1.7258 2.1370 -7.2150 28 1 3.8955 1.4676 -8.0675 29 1 1.9275 0.1508 -8.5910 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 0.3279 -0.1845 2.4089 34 1 1.1401 -1.3422 4.4220 35 1 5.2646 -3.3896 3.7707 36 1 6.0777 -4.5455 5.7845 37 1 4.7328 -4.5296 7.8444 38 1 2.5661 -3.3655 7.8996 39 1 1.7421 -2.1961 5.8980 40 1 4.6667 -2.5280 2.2976 41 1 3.8338 -1.3751 0.2901 42 1 0.3313 -1.8982 -1.5295 43 1 1.8609 -2.5533 -2.1616 44 1 1.5373 -2.5792 -0.4115 45 1 0.7298 0.1612 -2.6211 46 1 2.1739 1.1281 -2.2365 47 1 4.3367 0.2979 -3.1418 48 1 4.0173 -1.4005 -6.9296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929730902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:43 Heat of formation + Delta-G solvation = -10.052069 kcal Electronic energy + Delta-G solvation = -26639.871379 eV Core-core repulsion = 23044.745679 eV Total energy + Delta-G solvation = -3595.125699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.05807 -39.94117 -38.62913 -36.95699 -34.22333 -33.91077 -32.45022 -31.79658 -31.28705 -29.90638 -28.98078 -27.67642 -26.22963 -24.55720 -24.24183 -22.71199 -22.16407 -21.64083 -20.60670 -19.02533 -18.50788 -17.03237 -16.81019 -16.75802 -16.62911 -16.23024 -16.05183 -15.95862 -15.17375 -15.09385 -14.89006 -14.70075 -14.52281 -14.41654 -14.23772 -14.18740 -13.83674 -13.58936 -13.22984 -12.95862 -12.91480 -12.88237 -12.78847 -12.60937 -12.41600 -12.20382 -12.14309 -12.05720 -11.91127 -11.61106 -11.44545 -10.97209 -10.68485 -10.43902 -10.06726 -9.84261 -9.78270 -9.04384 -8.81912 -8.12074 -6.37595 -0.21269 0.51700 0.57096 1.02299 1.39402 1.40810 1.52703 2.38630 2.72491 3.06918 3.14457 3.20511 3.65620 3.84588 3.86351 4.05532 4.15692 4.16941 4.20322 4.33531 4.34676 4.35607 4.40351 4.46415 4.51345 4.56224 4.60911 4.64276 4.77658 4.80570 4.84394 4.93001 4.98851 5.06767 5.10444 5.12941 5.17761 5.25230 5.26758 5.42482 5.47307 5.61869 5.63109 5.65621 5.74407 5.81563 5.86772 6.03428 6.09695 6.14323 6.24659 6.36423 6.76716 7.36595 7.65476 8.92424 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.002266 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.686965 B =12353.434277 C =13152.293222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.115 3.885 3 H 0.088 0.912 4 C -0.076 4.076 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.062 4.062 8 C -0.059 4.059 9 C -0.130 4.130 10 C -0.126 4.126 11 C -0.127 4.127 12 C -0.123 4.123 13 C -0.122 4.122 14 C -0.123 4.123 15 C -0.103 4.103 16 N -0.529 5.529 17 C 0.036 3.964 18 C 0.051 3.949 19 C 0.237 3.763 20 H 0.019 0.981 21 O -0.570 6.570 22 C -0.586 4.586 23 H 0.059 0.941 24 C 0.024 3.976 25 N -0.899 5.899 26 Si 0.959 3.041 27 H -0.263 1.263 28 H -0.280 1.280 29 H -0.281 1.281 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.029 0.971 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.029 0.971 46 H 0.068 0.932 47 H 0.351 0.649 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -1.927 26.704 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.007 3.993 3 H 0.106 0.894 4 C -0.076 4.076 5 C -0.135 4.135 6 C -0.132 4.132 7 C -0.062 4.062 8 C -0.059 4.059 9 C -0.148 4.148 10 C -0.144 4.144 11 C -0.145 4.145 12 C -0.141 4.141 13 C -0.140 4.140 14 C -0.141 4.141 15 C -0.121 4.121 16 N -0.251 5.251 17 C -0.113 4.113 18 C -0.077 4.077 19 C 0.179 3.821 20 H 0.037 0.963 21 O -0.373 6.373 22 C -0.624 4.624 23 H 0.077 0.923 24 C -0.178 4.178 25 N -0.537 5.537 26 Si 0.784 3.216 27 H -0.187 1.187 28 H -0.205 1.205 29 H -0.206 1.206 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.143 0.857 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.145 0.855 41 H 0.136 0.864 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.086 0.914 47 H 0.195 0.805 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.193 -2.764 26.561 26.895 hybrid contribution -0.615 0.938 -1.537 1.903 sum -3.808 -1.826 25.024 25.378 Atomic orbital electron populations 1.22450 0.95690 1.02554 1.02901 1.20645 0.93703 0.97196 0.87792 0.89371 1.19932 0.94820 0.98154 0.94716 1.21225 1.00355 1.00001 0.91893 1.21388 0.95400 0.97366 0.99053 1.18953 0.95444 0.98894 0.92917 1.18981 0.95360 0.98369 0.93211 1.21477 0.95833 0.98017 0.99474 1.21388 1.00822 0.99279 0.92888 1.21570 0.94906 0.99337 0.98685 1.21435 0.96689 0.97216 0.98753 1.21491 1.00307 0.99905 0.92310 1.21366 1.00188 1.00082 0.92462 1.21080 0.96230 0.96783 0.98011 1.62062 1.57871 1.03093 1.02108 1.22237 0.96480 0.91243 1.01310 1.22677 0.98011 0.96683 0.90341 1.19171 0.79171 0.94392 0.89317 0.96327 1.86502 1.24946 1.32736 1.93099 1.22094 1.33135 1.11644 0.95512 0.92282 1.25901 0.94000 0.95796 1.02098 1.70235 1.32099 1.24924 1.26404 0.85520 0.78026 0.78960 0.79094 1.18657 1.20542 1.20632 0.89562 0.92986 0.92226 0.83686 0.83628 0.85665 0.84218 0.83753 0.83553 0.84356 0.85469 0.86389 0.95208 0.93814 0.91221 0.95277 0.91379 0.80462 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.19 7.69 71.98 0.55 -3.63 16 2 C 0.11 3.22 2.72 44.17 0.12 3.34 16 3 H 0.09 2.48 7.89 -2.39 -0.02 2.46 16 4 C -0.08 -2.01 4.65 -19.83 -0.09 -2.10 16 5 C -0.12 -2.52 9.12 22.24 0.20 -2.31 16 6 C -0.11 -2.35 9.43 22.48 0.21 -2.14 16 7 C -0.06 -1.45 5.88 -20.04 -0.12 -1.57 16 8 C -0.06 -1.25 5.88 -20.04 -0.12 -1.37 16 9 C -0.13 -2.59 9.43 22.48 0.21 -2.38 16 10 C -0.13 -2.03 10.03 22.24 0.22 -1.81 16 11 C -0.13 -1.76 10.04 22.31 0.22 -1.54 16 12 C -0.12 -1.73 10.03 22.24 0.22 -1.51 16 13 C -0.12 -2.08 9.43 22.48 0.21 -1.87 16 14 C -0.12 -3.20 9.43 22.48 0.21 -2.99 16 15 C -0.10 -2.99 8.52 22.24 0.19 -2.80 16 16 N -0.53 -18.66 3.54 -901.47 -3.19 -21.85 16 17 C 0.04 1.25 8.12 127.69 1.04 2.28 16 18 C 0.05 2.06 4.18 86.30 0.36 2.42 16 19 C 0.24 12.20 2.69 29.85 0.08 12.28 16 20 H 0.02 1.10 6.61 -2.39 -0.02 1.08 16 21 O -0.57 -30.28 12.60 -148.98 -1.88 -32.16 16 22 C -0.59 -32.21 8.76 25.60 0.22 -31.99 16 23 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 24 C 0.02 1.37 5.40 84.66 0.46 1.82 16 25 N -0.90 -54.40 12.84 21.45 0.28 -54.12 16 26 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 27 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 29 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 30 H 0.09 1.55 6.50 -2.39 -0.02 1.53 16 31 H 0.05 1.32 6.99 -2.39 -0.02 1.31 16 32 H 0.06 1.44 6.46 -2.39 -0.02 1.42 16 33 H 0.15 2.42 6.13 -2.91 -0.02 2.40 16 34 H 0.15 2.15 6.21 -2.91 -0.02 2.13 16 35 H 0.13 2.37 6.21 -2.91 -0.02 2.35 16 36 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 39 H 0.14 1.81 6.21 -2.91 -0.02 1.80 16 40 H 0.13 3.00 6.21 -2.91 -0.02 2.98 16 41 H 0.12 3.99 7.41 -2.91 -0.02 3.97 16 42 H 0.03 0.97 6.60 -2.39 -0.02 0.96 16 43 H 0.04 1.79 6.59 -2.39 -0.02 1.78 16 44 H 0.07 2.24 6.70 -2.39 -0.02 2.22 16 45 H 0.03 1.17 7.10 -2.39 -0.02 1.15 16 46 H 0.07 2.65 7.90 -2.39 -0.02 2.64 16 47 H 0.35 16.75 9.04 -74.06 -0.67 16.08 16 48 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -67.09 378.26 1.96 -65.12 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.31 Total: 35.24 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 4.42 Total: -37.85 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -2.91 Total: -75.97 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.88 Total: -32.16 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -67.09 1.96 -65.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929730902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.072 kcal (2) G-P(sol) polarization free energy of solvation -67.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds