Wall clock time and date at job start Sat Apr 11 2020 01:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35699 * 117.00172 * 2 1 4 4 C 1.41934 * 126.88292 * 180.30099 * 3 2 1 5 5 C 1.35271 * 103.96065 * 180.11831 * 4 3 2 6 6 C 1.50698 * 126.70644 * 179.87952 * 5 4 3 7 7 C 1.53005 * 109.47290 * 89.71118 * 6 5 4 8 8 C 1.50698 * 109.47290 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00180 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99979 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47123 * 35.00778 * 11 10 8 13 13 C 1.53002 * 109.47520 * 275.00457 * 11 10 8 14 14 C 1.53003 * 109.47333 * 155.00547 * 11 10 8 15 15 C 1.53004 * 109.46807 * 295.00361 * 14 11 10 16 16 H 1.08995 * 109.47216 * 304.99653 * 15 14 11 17 17 C 1.52999 * 109.47083 * 184.99648 * 15 14 11 18 18 N 1.46498 * 109.47065 * 64.99542 * 15 14 11 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 15 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 O 1.34077 * 106.58428 * 359.61503 * 5 4 3 28 28 N 1.20913 * 111.72068 * 0.26625 * 27 5 4 29 29 H 1.08996 * 109.47402 * 59.99891 * 1 2 3 30 30 H 1.09001 * 109.47424 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47135 * 300.00017 * 1 2 3 32 32 H 1.08002 * 128.01834 * 0.02765 * 4 3 2 33 33 H 1.09007 * 109.47260 * 329.71417 * 6 5 4 34 34 H 1.09002 * 109.47611 * 209.71144 * 6 5 4 35 35 H 1.08998 * 109.47291 * 59.99828 * 7 6 5 36 36 H 1.09004 * 109.46671 * 300.00001 * 7 6 5 37 37 H 0.96999 * 119.99718 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47436 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47185 * 300.00284 * 13 11 10 40 40 H 1.09004 * 109.46882 * 60.00056 * 13 11 10 41 41 H 1.08993 * 109.47316 * 175.00453 * 14 11 10 42 42 H 1.08998 * 109.46869 * 54.99922 * 14 11 10 43 43 H 1.09003 * 109.47054 * 59.99725 * 17 15 14 44 44 H 1.08996 * 109.47245 * 179.97438 * 17 15 14 45 45 H 1.08995 * 109.47098 * 300.00077 * 17 15 14 46 46 H 0.97001 * 120.00384 * 25.00562 * 18 15 14 47 47 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4526 -0.0060 5 6 3.5396 2.8019 -0.0005 6 6 4.8088 3.6144 -0.0007 7 6 5.2380 3.8895 -1.4434 8 6 6.5069 4.7025 -1.4436 9 8 7.0179 5.0294 -0.3934 10 7 7.0744 5.0655 -2.6109 11 6 8.3075 5.8563 -2.6112 12 1 8.9315 5.5568 -1.7691 13 6 7.9612 7.3414 -2.4864 14 6 9.0662 5.6178 -3.9183 15 6 9.5212 4.1584 -3.9848 16 1 10.1026 3.9182 -3.0947 17 6 10.3852 3.9498 -5.2301 18 7 8.3479 3.2838 -4.0523 19 6 8.4348 1.9871 -3.6207 20 1 9.3671 1.6106 -3.2264 21 6 7.3247 1.1566 -3.6901 22 7 6.1887 1.6154 -4.1711 23 14 7.4431 -0.6120 -3.1007 24 1 7.8159 -0.6309 -1.6634 25 1 6.1305 -1.2827 -3.2809 26 1 8.4770 -1.3286 -3.8899 27 8 2.2851 3.2751 -0.0007 28 7 1.4700 2.3820 -0.0004 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.2447 0.7286 -0.0119 33 1 5.5948 3.0607 0.5129 34 1 4.6351 4.5599 0.5131 35 1 4.4521 4.4431 -1.9570 36 1 5.4118 2.9439 -1.9572 37 1 6.6659 4.8037 -3.4509 38 1 8.8787 7.9299 -2.4870 39 1 7.3372 7.6410 -3.3285 40 1 7.4207 7.5114 -1.5552 41 1 9.9371 6.2720 -3.9575 42 1 8.4116 5.8331 -4.7628 43 1 11.2582 4.6007 -5.1798 44 1 10.7097 2.9104 -5.2772 45 1 9.8038 4.1901 -6.1201 46 1 7.5106 3.6219 -4.4066 47 1 5.4128 1.0352 -4.2193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134497721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:08 Heat of formation + Delta-G solvation = -7.056970 kcal Electronic energy + Delta-G solvation = -28728.054185 eV Core-core repulsion = 24722.209099 eV Total energy + Delta-G solvation = -4005.845085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.72334 -39.34799 -38.77901 -36.90975 -34.55765 -34.01460 -32.67310 -32.28041 -30.86625 -29.76012 -28.52458 -27.61548 -26.34523 -24.72577 -23.67456 -23.23026 -21.30834 -20.70418 -20.23300 -19.42771 -17.80563 -17.50610 -17.19325 -16.63596 -16.32031 -15.79145 -15.44239 -15.13732 -14.90853 -14.83676 -13.94028 -13.87259 -13.67347 -13.62311 -13.09767 -12.82799 -12.75160 -12.44871 -12.23629 -12.12156 -11.95093 -11.85475 -11.77923 -11.72412 -11.64291 -11.19965 -10.99676 -10.85333 -10.75036 -10.61067 -10.36954 -10.28480 -9.92239 -9.69975 -9.45514 -9.20778 -9.02823 -8.97553 -8.34171 -6.97573 -5.83370 -3.09433 1.56740 2.41656 2.81869 3.23636 3.35404 3.40173 3.46452 3.48013 3.90522 4.33230 4.55861 4.92900 5.02238 5.05237 5.09936 5.11699 5.24888 5.35678 5.37141 5.42810 5.51034 5.52550 5.62398 5.68243 5.70765 5.88379 5.92335 5.98631 6.01532 6.06046 6.14628 6.23955 6.24927 6.36373 6.41674 6.54004 6.56561 6.61170 6.84744 7.02940 7.04561 7.20782 7.66962 8.21263 8.36087 8.36334 8.92008 9.47566 10.01814 10.37714 11.38613 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.004119 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.775644 B = 6796.518657 C = 8678.629778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.284 6.284 3 C 0.209 3.791 4 C -0.229 4.229 5 C 0.010 3.990 6 C -0.022 4.022 7 C -0.143 4.143 8 C 0.533 3.467 9 O -0.568 6.568 10 N -0.696 5.696 11 C 0.150 3.850 12 H 0.082 0.918 13 C -0.162 4.162 14 C -0.134 4.134 15 C 0.169 3.831 16 H 0.048 0.952 17 C -0.164 4.164 18 N -0.716 5.716 19 C -0.227 4.227 20 H 0.066 0.934 21 C -0.009 4.009 22 N -0.933 5.933 23 Si 0.895 3.105 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.289 1.289 27 O 0.095 5.905 28 N -0.417 5.417 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.178 0.822 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.406 0.594 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.378 0.622 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 6.002 4.480 8.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.191 6.191 3 C 0.011 3.989 4 C -0.251 4.251 5 C -0.054 4.054 6 C -0.061 4.061 7 C -0.183 4.183 8 C 0.320 3.680 9 O -0.449 6.449 10 N -0.348 5.348 11 C 0.045 3.955 12 H 0.100 0.900 13 C -0.221 4.221 14 C -0.172 4.172 15 C 0.060 3.940 16 H 0.066 0.934 17 C -0.224 4.224 18 N -0.359 5.359 19 C -0.358 4.358 20 H 0.084 0.916 21 C -0.205 4.205 22 N -0.583 5.583 23 Si 0.727 3.273 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.216 1.216 27 O 0.036 5.964 28 N -0.145 5.145 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.195 0.805 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.243 0.757 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.213 0.787 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.320 6.185 5.271 9.713 hybrid contribution 0.007 -1.750 -0.460 1.809 sum -5.313 4.435 4.812 8.429 Atomic orbital electron populations 1.23019 0.77282 1.03787 1.02159 1.86199 1.22244 1.21172 1.89449 1.22007 0.91007 0.85568 1.00309 1.21848 0.94181 0.95984 1.13079 1.24403 0.88055 0.93316 0.99582 1.19949 0.88248 0.99677 0.98183 1.21692 0.95959 1.04012 0.96664 1.20192 0.85595 0.78557 0.83641 1.90618 1.65340 1.57303 1.31604 1.45946 1.25918 1.53949 1.08951 1.20783 0.86382 0.89620 0.98749 0.89964 1.22208 1.01506 0.96443 1.01900 1.22203 0.99897 0.98497 0.96628 1.20280 0.89797 0.88374 0.95590 0.93442 1.22427 0.98841 1.00967 1.00186 1.42454 1.08373 1.09453 1.75654 1.19158 0.96123 0.87511 1.33038 0.91576 1.24556 0.95981 0.97724 1.02206 1.69572 1.00985 1.35558 1.52155 0.86446 0.76617 0.85662 0.78606 1.21335 1.21666 1.21581 1.84754 1.12426 1.29968 1.69294 1.74072 1.15844 0.96668 1.27872 0.92318 0.87918 0.92494 0.80485 0.87573 0.88899 0.89293 0.85515 0.75678 0.92255 0.92871 0.92400 0.90919 0.91780 0.94617 0.92907 0.93628 0.78688 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.73 101.05 1.08 1.44 16 2 O -0.28 -4.29 10.57 -18.80 -0.20 -4.49 16 3 C 0.21 3.41 8.01 -16.65 -0.13 3.28 16 4 C -0.23 -3.65 11.10 -39.23 -0.44 -4.09 16 5 C 0.01 0.15 6.73 -35.37 -0.24 -0.09 16 6 C -0.02 -0.32 5.07 -27.88 -0.14 -0.46 16 7 C -0.14 -2.32 5.68 -27.88 -0.16 -2.48 16 8 C 0.53 9.52 7.79 -10.99 -0.09 9.43 16 9 O -0.57 -11.33 15.64 5.55 0.09 -11.25 16 10 N -0.70 -11.61 3.80 -53.81 -0.20 -11.81 16 11 C 0.15 2.27 2.57 -67.93 -0.17 2.10 16 12 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 14 C -0.13 -1.91 4.43 -26.73 -0.12 -2.03 16 15 C 0.17 3.02 2.89 -67.93 -0.20 2.82 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 18 N -0.72 -15.39 3.84 -53.43 -0.21 -15.59 16 19 C -0.23 -5.66 9.93 -15.06 -0.15 -5.81 16 20 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -24.14 12.83 55.49 0.71 -23.43 16 23 Si 0.90 21.17 29.55 -169.99 -5.02 16.14 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 O 0.09 1.49 11.19 17.08 0.19 1.68 16 28 N -0.42 -6.80 11.54 30.38 0.35 -6.45 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.18 2.68 8.06 -52.49 -0.42 2.26 16 33 H 0.11 1.57 8.10 -51.93 -0.42 1.15 16 34 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.13 2.44 7.91 -51.93 -0.41 2.03 16 37 H 0.41 6.92 6.51 -40.82 -0.27 6.65 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.38 8.31 5.71 -40.82 -0.23 8.08 16 47 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -28.56 393.59 -6.10 -34.66 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -7.61 Total: 14.92 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.14 Total: -0.32 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.65 Total: -57.29 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.08 Total: -14.06 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.56 -6.10 -34.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134497721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.604 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds