Wall clock time and date at job start Sat Apr 11 2020 01:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35699 * 117.00172 * 2 1 4 4 C 1.41934 * 126.88292 * 180.30099 * 3 2 1 5 5 C 1.35271 * 103.96065 * 180.11831 * 4 3 2 6 6 C 1.50698 * 126.70644 * 179.87952 * 5 4 3 7 7 C 1.53005 * 109.47290 * 89.71118 * 6 5 4 8 8 C 1.50698 * 109.47290 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00180 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99979 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47123 * 35.00778 * 11 10 8 13 13 C 1.53002 * 109.47520 * 275.00457 * 11 10 8 14 14 C 1.53003 * 109.47333 * 155.00547 * 11 10 8 15 15 C 1.53004 * 109.46807 * 295.00361 * 14 11 10 16 16 H 1.08995 * 109.47216 * 304.99653 * 15 14 11 17 17 C 1.52999 * 109.47083 * 184.99648 * 15 14 11 18 18 N 1.46498 * 109.47065 * 64.99542 * 15 14 11 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 15 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 O 1.34077 * 106.58428 * 359.61503 * 5 4 3 28 28 N 1.20913 * 111.72068 * 0.26625 * 27 5 4 29 29 H 1.08996 * 109.47402 * 59.99891 * 1 2 3 30 30 H 1.09001 * 109.47424 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47135 * 300.00017 * 1 2 3 32 32 H 1.08002 * 128.01834 * 0.02765 * 4 3 2 33 33 H 1.09007 * 109.47260 * 329.71417 * 6 5 4 34 34 H 1.09002 * 109.47611 * 209.71144 * 6 5 4 35 35 H 1.08998 * 109.47291 * 59.99828 * 7 6 5 36 36 H 1.09004 * 109.46671 * 300.00001 * 7 6 5 37 37 H 0.96999 * 119.99718 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47436 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47185 * 300.00284 * 13 11 10 40 40 H 1.09004 * 109.46882 * 60.00056 * 13 11 10 41 41 H 1.08993 * 109.47316 * 175.00453 * 14 11 10 42 42 H 1.08998 * 109.46869 * 54.99922 * 14 11 10 43 43 H 1.09003 * 109.47054 * 59.99725 * 17 15 14 44 44 H 1.08996 * 109.47245 * 179.97438 * 17 15 14 45 45 H 1.08995 * 109.47098 * 300.00077 * 17 15 14 46 46 H 0.97001 * 120.00384 * 25.00562 * 18 15 14 47 47 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4526 -0.0060 5 6 3.5396 2.8019 -0.0005 6 6 4.8088 3.6144 -0.0007 7 6 5.2380 3.8895 -1.4434 8 6 6.5069 4.7025 -1.4436 9 8 7.0179 5.0294 -0.3934 10 7 7.0744 5.0655 -2.6109 11 6 8.3075 5.8563 -2.6112 12 1 8.9315 5.5568 -1.7691 13 6 7.9612 7.3414 -2.4864 14 6 9.0662 5.6178 -3.9183 15 6 9.5212 4.1584 -3.9848 16 1 10.1026 3.9182 -3.0947 17 6 10.3852 3.9498 -5.2301 18 7 8.3479 3.2838 -4.0523 19 6 8.4348 1.9871 -3.6207 20 1 9.3671 1.6106 -3.2264 21 6 7.3247 1.1566 -3.6901 22 7 6.1887 1.6154 -4.1711 23 14 7.4431 -0.6120 -3.1007 24 1 7.8159 -0.6309 -1.6634 25 1 6.1305 -1.2827 -3.2809 26 1 8.4770 -1.3286 -3.8899 27 8 2.2851 3.2751 -0.0007 28 7 1.4700 2.3820 -0.0004 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.2447 0.7286 -0.0119 33 1 5.5948 3.0607 0.5129 34 1 4.6351 4.5599 0.5131 35 1 4.4521 4.4431 -1.9570 36 1 5.4118 2.9439 -1.9572 37 1 6.6659 4.8037 -3.4509 38 1 8.8787 7.9299 -2.4870 39 1 7.3372 7.6410 -3.3285 40 1 7.4207 7.5114 -1.5552 41 1 9.9371 6.2720 -3.9575 42 1 8.4116 5.8331 -4.7628 43 1 11.2582 4.6007 -5.1798 44 1 10.7097 2.9104 -5.2772 45 1 9.8038 4.1901 -6.1201 46 1 7.5106 3.6219 -4.4066 47 1 5.4128 1.0352 -4.2193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134497721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:08 Heat of formation + Delta-G solvation = -25.160999 kcal Electronic energy + Delta-G solvation = -28728.839234 eV Core-core repulsion = 24722.209099 eV Total energy + Delta-G solvation = -4006.630135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.96300 -40.72955 -39.89345 -38.33311 -35.95004 -35.43537 -33.99708 -33.85835 -32.25183 -31.09059 -30.10517 -28.55971 -27.55111 -25.98489 -25.51214 -24.47046 -22.54046 -21.93353 -21.61479 -20.84212 -19.08834 -18.99684 -18.72476 -17.83038 -17.64763 -17.12211 -16.59272 -16.49599 -16.42082 -16.04060 -15.55448 -15.40355 -15.07572 -14.90078 -14.39379 -14.22494 -14.09249 -13.74402 -13.50052 -13.29601 -13.17745 -13.14013 -13.01045 -12.87213 -12.83071 -12.74622 -12.55317 -12.41579 -12.22978 -12.13703 -11.88345 -11.65166 -11.54416 -11.35238 -10.82728 -10.77862 -10.48624 -10.28837 -9.72355 -8.77548 -7.81064 -5.03041 0.33080 1.16724 1.48306 1.52816 1.54925 1.72238 1.91579 2.04791 2.60351 2.64957 3.13772 3.52362 3.73910 3.87639 3.89285 3.98176 4.05829 4.17325 4.20453 4.22948 4.25888 4.36104 4.43497 4.47357 4.55718 4.62981 4.70095 4.76669 4.83593 4.88820 4.92362 4.98837 5.02131 5.13683 5.18145 5.20555 5.22221 5.43876 5.47080 5.64767 5.67614 5.89701 5.91206 6.40695 6.83397 7.12861 7.50437 7.52911 8.23240 8.50905 9.39082 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.004119 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.775644 B = 6796.518657 C = 8678.629778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.299 6.299 3 C 0.202 3.798 4 C -0.246 4.246 5 C 0.019 3.981 6 C -0.013 4.013 7 C -0.135 4.135 8 C 0.527 3.473 9 O -0.592 6.592 10 N -0.693 5.693 11 C 0.146 3.854 12 H 0.057 0.943 13 C -0.152 4.152 14 C -0.120 4.120 15 C 0.162 3.838 16 H 0.030 0.970 17 C -0.155 4.155 18 N -0.719 5.719 19 C -0.225 4.225 20 H 0.056 0.944 21 C -0.046 4.046 22 N -0.941 5.941 23 Si 0.935 3.065 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.293 1.293 27 O 0.095 5.905 28 N -0.424 5.424 29 H 0.056 0.944 30 H 0.135 0.865 31 H 0.062 0.938 32 H 0.180 0.820 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.404 0.596 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.027 0.973 45 H 0.046 0.954 46 H 0.376 0.624 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 7.359 4.039 9.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.205 6.205 3 C 0.004 3.996 4 C -0.268 4.268 5 C -0.044 4.044 6 C -0.052 4.052 7 C -0.175 4.175 8 C 0.315 3.685 9 O -0.475 6.475 10 N -0.344 5.344 11 C 0.042 3.958 12 H 0.076 0.924 13 C -0.210 4.210 14 C -0.159 4.159 15 C 0.054 3.946 16 H 0.048 0.952 17 C -0.215 4.215 18 N -0.362 5.362 19 C -0.358 4.358 20 H 0.074 0.926 21 C -0.240 4.240 22 N -0.592 5.592 23 Si 0.767 3.233 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.220 1.220 27 O 0.036 5.964 28 N -0.153 5.153 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.081 0.919 32 H 0.197 0.803 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.242 0.758 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.124 0.876 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.210 0.790 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.062 7.559 4.815 10.293 hybrid contribution -0.014 -2.171 -0.332 2.196 sum -5.075 5.388 4.483 8.654 Atomic orbital electron populations 1.23332 0.75156 1.06020 1.02346 1.86189 1.24439 1.20636 1.89272 1.22191 0.91264 0.86027 1.00113 1.22029 0.94479 0.96539 1.13729 1.24413 0.88026 0.93093 0.98866 1.19879 0.87731 1.00281 0.97259 1.21579 0.95920 1.02435 0.97544 1.20440 0.85949 0.78514 0.83610 1.90600 1.66081 1.58438 1.32359 1.46023 1.26213 1.53676 1.08480 1.20903 0.85531 0.91039 0.98343 0.92431 1.22103 1.02718 0.94520 1.01653 1.22116 1.01166 0.96254 0.96320 1.20481 0.88654 0.90024 0.95446 0.95159 1.22291 0.99757 1.00204 0.99259 1.42508 1.09539 1.08782 1.75355 1.19262 0.95436 0.89025 1.32051 0.92638 1.24911 0.96217 0.99525 1.03346 1.69646 1.00852 1.35558 1.53119 0.85816 0.75783 0.83641 0.78063 1.21467 1.22471 1.22000 1.84736 1.12493 1.29893 1.69288 1.74050 1.16033 0.96776 1.28443 0.92488 0.84741 0.91905 0.80277 0.88001 0.87278 0.87636 0.88354 0.75831 0.89919 0.91524 0.93900 0.87633 0.90731 0.91368 0.95333 0.93478 0.78957 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.73 113.37 1.22 1.74 16 2 O -0.30 -8.89 10.57 -90.19 -0.95 -9.84 16 3 C 0.20 6.56 8.01 85.79 0.69 7.25 16 4 C -0.25 -7.89 11.10 22.50 0.25 -7.64 16 5 C 0.02 0.59 6.73 25.00 0.17 0.75 16 6 C -0.01 -0.38 5.07 29.85 0.15 -0.22 16 7 C -0.13 -4.36 5.68 29.85 0.17 -4.19 16 8 C 0.53 18.74 7.79 87.66 0.68 19.42 16 9 O -0.59 -23.58 15.64 -3.04 -0.05 -23.63 16 10 N -0.69 -22.63 3.80 -442.53 -1.68 -24.32 16 11 C 0.15 4.21 2.57 44.99 0.12 4.32 16 12 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 13 C -0.15 -3.47 9.48 71.98 0.68 -2.79 16 14 C -0.12 -3.10 4.43 30.60 0.14 -2.97 16 15 C 0.16 5.56 2.89 44.99 0.13 5.69 16 16 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 17 C -0.16 -4.85 9.49 71.98 0.68 -4.17 16 18 N -0.72 -30.58 3.84 -322.94 -1.24 -31.82 16 19 C -0.23 -11.29 9.93 84.03 0.83 -10.45 16 20 H 0.06 2.86 7.83 -2.91 -0.02 2.84 16 21 C -0.05 -2.37 5.50 84.86 0.47 -1.90 16 22 N -0.94 -48.98 12.83 21.65 0.28 -48.70 16 23 Si 0.93 43.93 29.55 68.60 2.03 45.96 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 27 O 0.09 2.92 11.19 71.30 0.80 3.72 16 28 N -0.42 -13.68 11.54 -172.58 -1.99 -15.68 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.18 5.55 8.06 -2.91 -0.02 5.52 16 33 H 0.10 3.04 8.10 -2.38 -0.02 3.02 16 34 H 0.11 2.79 8.10 -2.39 -0.02 2.77 16 35 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.10 3.85 7.91 -2.38 -0.02 3.83 16 37 H 0.40 13.50 6.51 -92.71 -0.60 12.89 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.38 16.31 5.71 -92.71 -0.53 15.78 16 47 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 Total: -1.00 -61.25 393.59 3.41 -57.84 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.16 Total: 41.62 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 6.37 Total: 4.84 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -4.64 Total: -120.51 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.20 Total: -29.75 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -61.25 3.41 -57.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134497721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.681 kcal (2) G-P(sol) polarization free energy of solvation -61.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds