Wall clock time and date at job start Sat Apr 11 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47280 * 2 1 4 4 H 1.09008 * 109.47031 * 55.04218 * 3 2 1 5 5 C 1.50703 * 109.47364 * 175.04048 * 3 2 1 6 6 C 1.38230 * 119.99660 * 98.61663 * 5 3 2 7 7 C 1.38233 * 120.00066 * 179.78936 * 6 5 3 8 8 C 1.38241 * 119.99760 * 0.44487 * 7 6 5 9 9 C 1.38238 * 119.99955 * 359.81172 * 8 7 6 10 10 C 1.38229 * 119.99970 * 278.89451 * 5 3 2 11 11 N 1.46897 * 109.47286 * 295.04435 * 3 2 1 12 12 C 1.46905 * 110.99936 * 322.85175 * 11 3 2 13 13 C 1.46906 * 110.99999 * 86.80514 * 11 3 2 14 14 C 1.50704 * 109.46830 * 163.14203 * 13 11 3 15 15 C 1.38300 * 119.93416 * 90.00227 * 14 13 11 16 16 C 1.38092 * 120.06777 * 180.25115 * 15 14 13 17 17 C 1.38876 * 119.93096 * 359.46951 * 16 15 14 18 18 O 1.35761 * 120.06933 * 180.25301 * 17 16 15 19 19 C 1.34828 * 116.99861 * 176.67680 * 18 17 16 20 20 H 1.08005 * 120.00397 * 5.23910 * 19 18 17 21 21 C 1.38653 * 119.99752 * 185.24912 * 19 18 17 22 22 N 1.31554 * 120.00199 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99819 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47241 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46876 * 119.99869 * 23 21 19 26 26 H 1.48503 * 109.46977 * 239.99805 * 23 21 19 27 27 C 1.38876 * 119.86260 * 0.52891 * 17 16 15 28 28 C 1.38105 * 119.92986 * 359.72396 * 27 17 16 29 29 H 1.09000 * 109.47695 * 315.45473 * 1 2 3 30 30 H 1.09001 * 109.47114 * 75.45883 * 1 2 3 31 31 H 1.09002 * 109.47766 * 195.45335 * 1 2 3 32 32 H 1.08994 * 109.47119 * 239.99856 * 2 1 3 33 33 H 1.09006 * 109.46921 * 119.99836 * 2 1 3 34 34 H 1.08000 * 119.99929 * 0.02562 * 6 5 3 35 35 H 1.07993 * 120.00589 * 180.27793 * 7 6 5 36 36 H 1.08002 * 120.00110 * 179.83565 * 8 7 6 37 37 H 1.07992 * 119.99920 * 179.97438 * 9 8 7 38 38 H 1.08001 * 120.00541 * 359.97438 * 10 5 3 39 39 H 1.08993 * 109.46847 * 194.50666 * 12 11 3 40 40 H 1.09000 * 109.47056 * 314.50901 * 12 11 3 41 41 H 1.08998 * 109.46821 * 74.50282 * 12 11 3 42 42 H 1.09000 * 109.47237 * 43.13684 * 13 11 3 43 43 H 1.09002 * 109.46999 * 283.13924 * 13 11 3 44 44 H 1.07998 * 119.96215 * 359.96825 * 15 14 13 45 45 H 1.07999 * 120.03371 * 179.72001 * 16 15 14 46 46 H 0.97005 * 120.00116 * 180.02562 * 22 21 19 47 47 H 1.08004 * 120.03500 * 179.70834 * 27 17 16 48 48 H 1.07999 * 119.96233 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6059 1.9813 0.8423 5 6 3.5420 1.4442 0.1228 6 6 4.3275 1.5902 -1.0052 7 6 5.7052 1.5963 -0.8921 8 6 6.2975 1.4471 0.3480 9 6 5.5120 1.2957 1.4755 10 6 4.1342 1.2941 1.3628 11 7 1.6505 2.0996 -1.2547 12 6 1.7293 1.1647 -2.3852 13 6 0.3071 2.6843 -1.1478 14 6 0.1033 3.6813 -2.2594 15 6 -0.4244 3.2679 -3.4691 16 6 -0.6075 4.1782 -4.4913 17 6 -0.2713 5.5119 -4.2999 18 8 -0.4549 6.4102 -5.3012 19 6 -0.1726 7.6996 -5.0262 20 1 0.2617 7.9661 -4.0739 21 6 -0.4401 8.6834 -5.9658 22 7 -0.9688 8.3588 -7.1259 23 14 -0.0497 10.4700 -5.5846 24 1 0.5340 10.5694 -4.2228 25 1 0.9236 10.9872 -6.5797 26 1 -1.2969 11.2736 -5.6479 27 6 0.2585 5.9240 -3.0841 28 6 0.4440 5.0078 -2.0674 29 1 -0.3634 0.7324 0.7209 30 1 -0.3633 0.2580 -0.9948 31 1 -0.3635 -0.9905 0.2738 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8647 1.7034 -1.9745 35 1 6.3188 1.7148 -1.7728 36 1 7.3739 1.4491 0.4361 37 1 5.9747 1.1788 2.4442 38 1 3.5206 1.1760 2.2436 39 1 1.6906 1.7221 -3.3210 40 1 2.6652 0.6084 -2.3320 41 1 0.8907 0.4698 -2.3410 42 1 0.2049 3.1866 -0.1859 43 1 -0.4402 1.8946 -1.2265 44 1 -0.6894 2.2313 -3.6159 45 1 -1.0154 3.8539 -5.4372 46 1 -1.1556 9.0471 -7.7834 47 1 0.5253 6.9597 -2.9338 48 1 0.8555 5.3277 -1.1215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137121358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:10 Heat of formation + Delta-G solvation = 21.797166 kcal Electronic energy + Delta-G solvation = -26963.668421 eV Core-core repulsion = 23369.923808 eV Total energy + Delta-G solvation = -3593.744613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.14404 -40.56182 -39.03182 -37.84983 -34.40708 -33.63042 -32.12197 -31.85720 -31.69812 -30.79708 -28.32647 -27.63152 -26.81680 -24.08431 -23.54572 -23.25489 -22.89764 -21.69807 -20.76491 -19.82022 -18.81790 -17.80801 -17.20756 -16.63480 -16.49674 -16.19374 -16.01113 -15.76402 -15.50415 -15.36768 -15.11719 -14.96656 -14.43972 -14.33564 -14.16898 -14.11561 -13.84108 -13.55371 -13.37523 -13.06797 -12.92629 -12.76562 -12.69876 -12.56895 -12.47837 -12.30354 -12.12281 -12.09524 -12.04818 -11.70173 -11.63458 -11.33904 -11.13698 -10.79221 -9.73388 -9.70713 -9.49467 -9.08899 -8.82722 -8.46858 -6.14488 0.54826 0.61750 0.64033 0.72789 1.34635 1.42860 1.52968 2.17920 2.75553 2.95788 3.07737 3.37441 3.54453 3.80159 3.96548 4.05683 4.13322 4.16734 4.23160 4.24694 4.27446 4.36902 4.44127 4.46478 4.49748 4.63427 4.64370 4.69351 4.76857 4.78678 4.86253 4.91069 4.92009 5.08386 5.11462 5.16034 5.17732 5.20182 5.22842 5.30956 5.34226 5.43947 5.60853 5.66773 5.73750 5.74939 5.78316 5.86004 6.04634 6.19842 6.22803 6.25543 6.35374 6.98434 7.80340 8.76875 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.002674 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.546035 B =10469.313573 C =11526.204409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.142 4.142 3 C 0.125 3.875 4 H 0.093 0.907 5 C -0.077 4.077 6 C -0.122 4.122 7 C -0.138 4.138 8 C -0.136 4.136 9 C -0.128 4.128 10 C -0.126 4.126 11 N -0.537 5.537 12 C 0.015 3.985 13 C 0.109 3.891 14 C -0.147 4.147 15 C -0.057 4.057 16 C -0.205 4.205 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.411 4.411 20 H 0.099 0.901 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.018 2.982 24 H -0.253 1.253 25 H -0.268 1.268 26 H -0.267 1.267 27 C -0.244 4.244 28 C -0.052 4.052 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.142 0.858 45 H 0.110 0.890 46 H 0.272 0.728 47 H 0.114 0.886 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 -17.984 19.350 27.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.181 4.181 3 C 0.016 3.984 4 H 0.111 0.889 5 C -0.078 4.078 6 C -0.140 4.140 7 C -0.156 4.156 8 C -0.154 4.154 9 C -0.146 4.146 10 C -0.144 4.144 11 N -0.260 5.260 12 C -0.133 4.133 13 C -0.018 4.018 14 C -0.148 4.148 15 C -0.075 4.075 16 C -0.224 4.224 17 C 0.063 3.937 18 O -0.141 6.141 19 C -0.488 4.488 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.837 3.163 24 H -0.176 1.176 25 H -0.193 1.193 26 H -0.192 1.192 27 C -0.263 4.263 28 C -0.071 4.071 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.160 0.840 45 H 0.129 0.871 46 H 0.081 0.919 47 H 0.131 0.869 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.049 -17.545 18.858 27.301 hybrid contribution -0.397 0.538 -0.515 0.844 sum 8.652 -17.007 18.343 26.468 Atomic orbital electron populations 1.22063 0.94991 1.02503 1.02007 1.22150 0.96526 0.96231 1.03185 1.20724 0.91074 0.94103 0.92452 0.88912 1.19945 0.95219 0.99179 0.93436 1.21420 0.93699 0.99239 0.99624 1.21419 0.95173 1.00632 0.98409 1.21404 1.00739 1.00497 0.92720 1.21378 0.93813 1.00098 0.99276 1.21184 0.95341 1.00781 0.97074 1.62017 1.26439 1.33973 1.03539 1.22667 1.01595 0.95119 0.93891 1.21129 0.89381 0.95186 0.96067 1.19613 1.04723 0.94155 0.96310 1.20824 0.96709 0.98465 0.91507 1.20414 1.09786 0.90809 1.01391 1.19927 0.94342 0.90987 0.88474 1.83941 1.77483 1.17617 1.35063 1.21835 1.42699 0.80250 1.03977 0.88321 1.26571 0.96084 1.04878 0.94532 1.70189 1.42725 1.35871 1.07257 0.84542 0.78518 0.73999 0.79228 1.17590 1.19307 1.19237 1.21226 1.09407 1.00929 0.94788 1.20871 0.96020 0.92676 0.97532 0.92029 0.92518 0.91818 0.91460 0.90702 0.85590 0.85745 0.84780 0.84217 0.84586 0.92787 0.90625 0.93612 0.89792 0.91597 0.83981 0.87140 0.91870 0.86858 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.27 71.98 0.60 -1.44 16 2 C -0.14 -1.99 4.86 30.59 0.15 -1.84 16 3 C 0.12 2.16 2.15 44.17 0.09 2.25 16 4 H 0.09 1.51 7.42 -2.38 -0.02 1.49 16 5 C -0.08 -1.50 5.06 -19.87 -0.10 -1.60 16 6 C -0.12 -2.68 8.49 22.27 0.19 -2.49 16 7 C -0.14 -2.80 10.05 22.27 0.22 -2.57 16 8 C -0.14 -2.37 10.05 22.27 0.22 -2.14 16 9 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 10 C -0.13 -2.11 9.73 22.27 0.22 -1.89 16 11 N -0.54 -11.41 3.97 -906.01 -3.60 -15.01 16 12 C 0.01 0.30 6.55 127.69 0.84 1.14 16 13 C 0.11 2.40 4.32 85.56 0.37 2.77 16 14 C -0.15 -4.53 5.08 -19.83 -0.10 -4.63 16 15 C -0.06 -1.87 8.42 22.25 0.19 -1.69 16 16 C -0.20 -8.81 9.99 22.39 0.22 -8.58 16 17 C 0.11 5.75 6.65 22.58 0.15 5.90 16 18 O -0.23 -14.42 9.76 -22.85 -0.22 -14.64 16 19 C -0.41 -24.53 9.48 67.92 0.64 -23.88 16 20 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 21 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 22 N -0.92 -57.50 13.67 21.61 0.30 -57.21 16 23 Si 1.02 43.77 29.55 68.60 2.03 45.79 16 24 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 C -0.24 -10.99 9.17 22.39 0.21 -10.78 16 28 C -0.05 -1.87 9.69 22.25 0.22 -1.65 16 29 H 0.06 0.75 7.87 -2.39 -0.02 0.73 16 30 H 0.06 0.81 4.52 -2.39 -0.01 0.80 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 1.02 6.03 -2.39 -0.01 1.01 16 33 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.13 2.96 4.96 -2.91 -0.01 2.94 16 35 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 36 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.05 1.32 7.03 -2.39 -0.02 1.31 16 40 H 0.08 1.44 5.11 -2.39 -0.01 1.43 16 41 H 0.05 0.80 5.43 -2.39 -0.01 0.79 16 42 H 0.08 1.69 7.55 -2.39 -0.02 1.67 16 43 H 0.07 1.25 4.95 -2.39 -0.01 1.24 16 44 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 45 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 46 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 47 H 0.11 5.26 5.62 -2.91 -0.02 5.24 16 48 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -71.56 374.52 4.48 -67.08 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.97 Total: 29.84 kcal Atomic # 6 Polarization: -60.86 SS G_CDS: 5.01 Total: -55.85 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -3.30 Total: -72.22 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.22 Total: -14.64 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -71.56 4.48 -67.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137121358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.874 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds