Wall clock time and date at job start Sat Apr 11 2020 01:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 O 1.42895 * 109.47038 * 179.97438 * 3 2 1 5 5 C 1.35903 * 116.99998 * 179.97438 * 4 3 2 6 6 C 1.38751 * 120.05612 * 0.25967 * 5 4 3 7 7 C 1.38127 * 119.94238 * 180.27402 * 6 5 4 8 8 C 1.38283 * 120.05413 * 359.72245 * 7 6 5 9 9 C 1.38241 * 120.11528 * 0.02562 * 8 7 6 10 10 C 1.38167 * 120.05370 * 359.97438 * 9 8 7 11 11 C 1.50705 * 120.02581 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.47141 * 259.99639 * 11 10 9 13 13 C 1.36933 * 120.00529 * 269.99960 * 12 11 10 14 14 H 1.07995 * 120.00190 * 136.39412 * 13 12 11 15 15 C 1.38812 * 119.99732 * 316.40020 * 13 12 11 16 16 N 1.31618 * 120.00404 * 354.30818 * 15 13 12 17 17 Si 1.86800 * 119.99743 * 174.30794 * 15 13 12 18 18 H 1.48500 * 109.47478 * 89.99929 * 17 15 13 19 19 H 1.48502 * 109.47546 * 209.99901 * 17 15 13 20 20 H 1.48501 * 109.47297 * 329.99619 * 17 15 13 21 21 C 1.46502 * 119.99518 * 90.00609 * 12 11 10 22 22 C 1.50703 * 109.47494 * 91.83156 * 21 12 11 23 23 C 1.38239 * 120.00093 * 87.93127 * 22 21 12 24 24 C 1.38229 * 119.99709 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00452 * 0.09393 * 24 23 22 26 26 C 1.38238 * 119.99729 * 359.86119 * 25 24 23 27 27 C 1.38235 * 120.00082 * 0.09184 * 26 25 24 28 28 H 1.08997 * 109.46838 * 299.99356 * 1 2 3 29 29 H 1.08993 * 109.47301 * 59.99860 * 1 2 3 30 30 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46580 * 240.00263 * 2 1 3 32 32 H 1.08993 * 109.47301 * 120.00140 * 2 1 3 33 33 H 1.09004 * 109.46612 * 60.00317 * 3 2 1 34 34 H 1.08993 * 109.47233 * 300.00181 * 3 2 1 35 35 H 1.07997 * 120.02820 * 0.02562 * 6 5 4 36 36 H 1.07993 * 119.97066 * 179.73859 * 7 6 5 37 37 H 1.07999 * 119.94118 * 180.02562 * 8 7 6 38 38 H 1.08004 * 119.97744 * 179.97438 * 9 8 7 39 39 H 1.09006 * 109.46906 * 139.99613 * 11 10 9 40 40 H 1.09001 * 109.47118 * 20.00301 * 11 10 9 41 41 H 0.96998 * 119.99975 * 180.02562 * 16 15 13 42 42 H 1.08994 * 109.47358 * 331.82621 * 21 12 11 43 43 H 1.08999 * 109.46950 * 211.82564 * 21 12 11 44 44 H 1.08000 * 119.99536 * 359.70233 * 23 22 21 45 45 H 1.08001 * 119.99720 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.00315 * 179.97438 * 25 24 23 47 47 H 1.07997 * 119.99605 * 180.02562 * 26 25 24 48 48 H 1.08001 * 119.99996 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0860 2.6534 0.0001 6 6 3.3314 3.8178 0.0046 7 6 3.9609 5.0473 -0.0016 8 6 5.3419 5.1183 -0.0065 9 6 6.0959 3.9597 -0.0056 10 6 5.4711 2.7274 0.0006 11 6 6.2938 1.4647 0.0009 12 7 6.3537 0.9206 -1.3579 13 6 5.4042 0.0294 -1.7812 14 1 4.9687 0.1305 -2.7643 15 6 5.0012 -1.0040 -0.9466 16 7 5.6093 -1.1952 0.2050 17 14 3.5957 -2.1233 -1.4577 18 1 4.1350 -3.2797 -2.2175 19 1 2.8876 -2.6130 -0.2478 20 1 2.6472 -1.3673 -2.3144 21 6 7.4298 1.3299 -2.2639 22 6 8.5833 0.3679 -2.1410 23 6 8.6183 -0.7727 -2.9214 24 6 9.6766 -1.6547 -2.8090 25 6 10.6989 -1.3974 -1.9149 26 6 10.6644 -0.2564 -1.1351 27 6 9.6065 0.6262 -1.2482 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 2.2528 3.7629 0.0088 36 1 3.3740 5.9539 -0.0025 37 1 5.8321 6.0806 -0.0109 38 1 7.1744 4.0177 -0.0098 39 1 5.8352 0.7325 0.6656 40 1 7.3026 1.6884 0.3476 41 1 5.3279 -1.9175 0.7880 42 1 7.7640 2.3334 -2.0011 43 1 7.0618 1.3266 -3.2899 44 1 7.8166 -0.9766 -3.6157 45 1 9.7038 -2.5460 -3.4184 46 1 11.5255 -2.0868 -1.8267 47 1 11.4633 -0.0552 -0.4369 48 1 9.5793 1.5174 -0.6388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139001815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:23 Heat of formation + Delta-G solvation = 32.371452 kcal Electronic energy + Delta-G solvation = -28432.265244 eV Core-core repulsion = 24838.979167 eV Total energy + Delta-G solvation = -3593.286077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.50277 -38.43333 -36.92802 -35.40401 -33.53923 -31.82873 -31.35127 -30.12761 -29.56814 -29.09901 -26.22532 -25.54071 -25.32279 -22.41838 -21.89722 -21.76419 -20.98019 -20.41172 -19.76514 -17.40889 -16.62642 -16.04698 -15.78804 -15.45195 -14.94962 -14.67152 -14.38712 -14.30702 -13.89373 -13.85184 -13.76975 -13.28291 -13.07754 -12.77795 -12.66149 -12.22829 -12.02010 -11.92696 -11.89024 -11.75606 -11.41910 -11.17729 -11.03436 -10.97243 -10.85876 -10.60816 -10.42249 -10.25611 -10.09790 -10.07304 -9.92747 -9.81959 -9.66441 -8.41036 -8.23978 -8.15070 -7.91770 -7.33993 -6.43579 -5.66738 -3.34988 1.96206 2.12188 2.17302 2.21693 3.32695 3.39239 3.41884 3.94144 4.38134 4.53362 4.61447 5.20522 5.21223 5.38734 5.43945 5.50064 5.51423 5.56313 5.57785 5.60722 5.65892 5.71459 5.74892 5.87463 5.89411 5.92164 5.96307 6.12025 6.19444 6.22869 6.26784 6.30307 6.38611 6.41957 6.54166 6.64410 6.67289 6.76535 6.81525 6.85348 6.99380 7.14315 7.18694 7.23222 7.27852 7.52888 7.56234 7.80328 7.81616 7.96089 8.29712 8.66940 9.27508 9.85759 10.45198 11.31507 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.005503 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.968133 B = 5086.793996 C = 7156.007822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.062 3.938 4 O -0.263 6.263 5 C 0.154 3.846 6 C -0.225 4.225 7 C -0.103 4.103 8 C -0.170 4.170 9 C -0.091 4.091 10 C -0.107 4.107 11 C 0.179 3.821 12 N -0.561 5.561 13 C -0.243 4.243 14 H 0.052 0.948 15 C 0.043 3.957 16 N -0.880 5.880 17 Si 0.889 3.111 18 H -0.296 1.296 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.176 3.824 22 C -0.067 4.067 23 C -0.096 4.096 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.128 4.128 27 C -0.116 4.116 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.027 0.973 41 H 0.253 0.747 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 6.322 -0.451 6.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.014 4.014 4 O -0.174 6.174 5 C 0.107 3.893 6 C -0.244 4.244 7 C -0.121 4.121 8 C -0.188 4.188 9 C -0.110 4.110 10 C -0.110 4.110 11 C 0.054 3.946 12 N -0.278 5.278 13 C -0.373 4.373 14 H 0.069 0.931 15 C -0.158 4.158 16 N -0.522 5.522 17 Si 0.721 3.279 18 H -0.224 1.224 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.050 3.950 22 C -0.070 4.070 23 C -0.115 4.115 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.146 4.146 27 C -0.135 4.135 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.205 5.974 -0.306 6.102 hybrid contribution -1.042 -0.534 -0.131 1.178 sum -2.247 5.440 -0.437 5.902 Atomic orbital electron populations 1.21667 0.95051 1.01927 1.01629 1.21730 0.95220 0.95997 1.04479 1.22641 0.81132 0.97746 0.99865 1.86530 1.18434 1.25339 1.87145 1.18891 0.92138 0.84033 0.94229 1.21147 0.99226 0.92886 1.11113 1.20642 0.94536 0.96293 1.00674 1.20837 0.93879 0.97769 1.06346 1.20858 0.99109 0.91471 0.99608 1.20658 0.91919 0.98029 1.00407 1.20083 0.94625 0.90387 0.89506 1.43677 1.24686 1.48755 1.10713 1.18787 1.13947 1.03593 1.00974 0.93071 1.25161 0.97678 0.96020 0.96978 1.69674 1.41091 1.30841 1.10599 0.86751 0.82528 0.80924 0.77710 1.22407 1.21336 1.20209 1.20050 0.86563 0.93071 0.95276 1.20978 0.94590 0.97525 0.93939 1.20947 0.96810 0.94096 0.99648 1.21008 0.95150 0.99008 0.99254 1.20853 0.99128 0.97836 0.98352 1.20933 0.98649 0.95359 0.99631 1.20905 0.94348 0.99493 0.98763 0.92687 0.92647 0.92277 0.90310 0.90825 0.93341 0.93042 0.86747 0.87277 0.87288 0.86638 0.86253 0.95412 0.93640 0.93855 0.93262 0.86671 0.87403 0.87545 0.87448 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.14 -2.38 5.46 -26.73 -0.15 -2.53 16 3 C 0.06 1.08 4.74 37.16 0.18 1.26 16 4 O -0.26 -5.67 7.60 -19.44 -0.15 -5.82 16 5 C 0.15 3.16 6.66 -39.22 -0.26 2.90 16 6 C -0.22 -3.93 9.04 -39.43 -0.36 -4.28 16 7 C -0.10 -1.63 10.04 -39.61 -0.40 -2.02 16 8 C -0.17 -2.70 10.04 -39.56 -0.40 -3.10 16 9 C -0.09 -1.63 9.67 -39.61 -0.38 -2.01 16 10 C -0.11 -2.22 5.48 -104.47 -0.57 -2.79 16 11 C 0.18 4.15 5.08 -5.19 -0.03 4.12 16 12 N -0.56 -13.28 2.38 -175.98 -0.42 -13.70 16 13 C -0.24 -6.28 8.48 -15.06 -0.13 -6.41 16 14 H 0.05 1.37 7.83 -52.49 -0.41 0.96 16 15 C 0.04 1.12 4.53 -17.43 -0.08 1.04 16 16 N -0.88 -24.21 11.00 55.49 0.61 -23.60 16 17 Si 0.89 21.15 25.88 -169.99 -4.40 16.75 16 18 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.34 6.36 56.52 0.36 -5.98 16 21 C 0.18 3.67 5.79 -5.19 -0.03 3.64 16 22 C -0.07 -1.37 5.46 -104.62 -0.57 -1.94 16 23 C -0.10 -1.93 9.71 -39.58 -0.38 -2.31 16 24 C -0.13 -2.28 10.05 -39.59 -0.40 -2.68 16 25 C -0.14 -2.44 10.05 -39.58 -0.40 -2.84 16 26 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 27 C -0.12 -2.19 9.69 -39.58 -0.38 -2.57 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.57 3.65 -51.93 -0.19 1.38 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.05 0.74 7.65 -51.93 -0.40 0.35 16 34 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 35 H 0.11 1.76 6.30 -52.49 -0.33 1.43 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.12 1.85 8.04 -52.48 -0.42 1.43 16 39 H 0.12 3.17 5.07 -51.93 -0.26 2.91 16 40 H 0.03 0.62 7.93 -51.93 -0.41 0.20 16 41 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.04 0.83 7.99 -51.93 -0.41 0.41 16 43 H 0.05 1.01 8.01 -51.93 -0.42 0.60 16 44 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 47 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 48 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -28.41 384.79 -10.80 -39.21 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.48 Total: 8.04 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -4.76 Total: -26.68 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.19 Total: -37.30 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.15 Total: -5.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.40 Total: 16.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.41 -10.80 -39.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139001815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.586 kcal (2) G-P(sol) polarization free energy of solvation -28.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds