Wall clock time and date at job start Sat Apr 11 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 O 1.42895 * 109.47038 * 179.97438 * 3 2 1 5 5 C 1.35903 * 116.99998 * 179.97438 * 4 3 2 6 6 C 1.38751 * 120.05612 * 0.25967 * 5 4 3 7 7 C 1.38127 * 119.94238 * 180.27402 * 6 5 4 8 8 C 1.38283 * 120.05413 * 359.72245 * 7 6 5 9 9 C 1.38241 * 120.11528 * 0.02562 * 8 7 6 10 10 C 1.38167 * 120.05370 * 359.97438 * 9 8 7 11 11 C 1.50705 * 120.02581 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.47141 * 259.99639 * 11 10 9 13 13 C 1.36933 * 120.00529 * 269.99960 * 12 11 10 14 14 H 1.07995 * 120.00190 * 136.39412 * 13 12 11 15 15 C 1.38812 * 119.99732 * 316.40020 * 13 12 11 16 16 N 1.31618 * 120.00404 * 354.30818 * 15 13 12 17 17 Si 1.86800 * 119.99743 * 174.30794 * 15 13 12 18 18 H 1.48500 * 109.47478 * 89.99929 * 17 15 13 19 19 H 1.48502 * 109.47546 * 209.99901 * 17 15 13 20 20 H 1.48501 * 109.47297 * 329.99619 * 17 15 13 21 21 C 1.46502 * 119.99518 * 90.00609 * 12 11 10 22 22 C 1.50703 * 109.47494 * 91.83156 * 21 12 11 23 23 C 1.38239 * 120.00093 * 87.93127 * 22 21 12 24 24 C 1.38229 * 119.99709 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00452 * 0.09393 * 24 23 22 26 26 C 1.38238 * 119.99729 * 359.86119 * 25 24 23 27 27 C 1.38235 * 120.00082 * 0.09184 * 26 25 24 28 28 H 1.08997 * 109.46838 * 299.99356 * 1 2 3 29 29 H 1.08993 * 109.47301 * 59.99860 * 1 2 3 30 30 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46580 * 240.00263 * 2 1 3 32 32 H 1.08993 * 109.47301 * 120.00140 * 2 1 3 33 33 H 1.09004 * 109.46612 * 60.00317 * 3 2 1 34 34 H 1.08993 * 109.47233 * 300.00181 * 3 2 1 35 35 H 1.07997 * 120.02820 * 0.02562 * 6 5 4 36 36 H 1.07993 * 119.97066 * 179.73859 * 7 6 5 37 37 H 1.07999 * 119.94118 * 180.02562 * 8 7 6 38 38 H 1.08004 * 119.97744 * 179.97438 * 9 8 7 39 39 H 1.09006 * 109.46906 * 139.99613 * 11 10 9 40 40 H 1.09001 * 109.47118 * 20.00301 * 11 10 9 41 41 H 0.96998 * 119.99975 * 180.02562 * 16 15 13 42 42 H 1.08994 * 109.47358 * 331.82621 * 21 12 11 43 43 H 1.08999 * 109.46950 * 211.82564 * 21 12 11 44 44 H 1.08000 * 119.99536 * 359.70233 * 23 22 21 45 45 H 1.08001 * 119.99720 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.00315 * 179.97438 * 25 24 23 47 47 H 1.07997 * 119.99605 * 180.02562 * 26 25 24 48 48 H 1.08001 * 119.99996 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0860 2.6534 0.0001 6 6 3.3314 3.8178 0.0046 7 6 3.9609 5.0473 -0.0016 8 6 5.3419 5.1183 -0.0065 9 6 6.0959 3.9597 -0.0056 10 6 5.4711 2.7274 0.0006 11 6 6.2938 1.4647 0.0009 12 7 6.3537 0.9206 -1.3579 13 6 5.4042 0.0294 -1.7812 14 1 4.9687 0.1305 -2.7643 15 6 5.0012 -1.0040 -0.9466 16 7 5.6093 -1.1952 0.2050 17 14 3.5957 -2.1233 -1.4577 18 1 4.1350 -3.2797 -2.2175 19 1 2.8876 -2.6130 -0.2478 20 1 2.6472 -1.3673 -2.3144 21 6 7.4298 1.3299 -2.2639 22 6 8.5833 0.3679 -2.1410 23 6 8.6183 -0.7727 -2.9214 24 6 9.6766 -1.6547 -2.8090 25 6 10.6989 -1.3974 -1.9149 26 6 10.6644 -0.2564 -1.1351 27 6 9.6065 0.6262 -1.2482 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 2.2528 3.7629 0.0088 36 1 3.3740 5.9539 -0.0025 37 1 5.8321 6.0806 -0.0109 38 1 7.1744 4.0177 -0.0098 39 1 5.8352 0.7325 0.6656 40 1 7.3026 1.6884 0.3476 41 1 5.3279 -1.9175 0.7880 42 1 7.7640 2.3334 -2.0011 43 1 7.0618 1.3266 -3.2899 44 1 7.8166 -0.9766 -3.6157 45 1 9.7038 -2.5460 -3.4184 46 1 11.5255 -2.0868 -1.8267 47 1 11.4633 -0.0552 -0.4369 48 1 9.5793 1.5174 -0.6388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139001815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:21 Heat of formation + Delta-G solvation = 20.508037 kcal Electronic energy + Delta-G solvation = -28432.779681 eV Core-core repulsion = 24838.979167 eV Total energy + Delta-G solvation = -3593.800514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.92925 -39.90132 -38.34430 -37.11404 -34.82741 -33.65776 -32.85915 -31.56874 -31.11580 -30.52141 -27.56674 -27.17829 -27.02158 -23.94359 -23.37885 -23.19630 -22.38066 -21.83031 -21.36814 -18.91277 -18.39589 -17.53446 -17.21696 -16.94253 -16.39449 -16.28591 -15.96720 -15.83886 -15.52983 -15.30891 -15.13329 -14.71246 -14.63747 -14.28832 -14.09064 -13.60185 -13.39235 -13.32651 -13.30625 -13.17323 -13.05881 -12.69814 -12.63498 -12.53872 -12.40918 -12.07930 -11.93117 -11.86920 -11.71374 -11.67110 -11.57412 -11.38365 -11.21919 -10.40469 -9.62129 -9.60319 -9.39811 -8.76878 -8.34692 -7.64535 -5.36619 0.58514 0.71035 0.72696 0.80823 1.37937 1.42249 1.46685 2.52582 2.60842 3.02256 3.12979 3.51808 3.89597 3.92936 4.08883 4.10292 4.16265 4.18773 4.25353 4.26510 4.34753 4.37513 4.42750 4.46547 4.52954 4.61160 4.64663 4.70381 4.82573 4.82974 4.93437 4.96545 5.00441 5.02864 5.08489 5.09488 5.26570 5.33823 5.36694 5.37391 5.64439 5.69322 5.74813 5.76308 5.77982 5.84200 6.04116 6.05929 6.18626 6.36547 6.65093 6.90885 7.33748 7.95656 8.51093 9.28927 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.005503 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.968133 B = 5086.793996 C = 7156.007822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.059 3.941 4 O -0.299 6.299 5 C 0.126 3.874 6 C -0.227 4.227 7 C -0.095 4.095 8 C -0.164 4.164 9 C -0.094 4.094 10 C -0.139 4.139 11 C 0.191 3.809 12 N -0.571 5.571 13 C -0.237 4.237 14 H 0.034 0.966 15 C 0.014 3.986 16 N -0.904 5.904 17 Si 0.926 3.074 18 H -0.307 1.307 19 H -0.287 1.287 20 H -0.267 1.267 21 C 0.180 3.820 22 C -0.087 4.087 23 C -0.121 4.121 24 C -0.133 4.133 25 C -0.141 4.141 26 C -0.128 4.128 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.024 0.976 41 H 0.244 0.756 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.102 0.898 45 H 0.129 0.871 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 8.398 -0.236 8.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.175 4.175 3 C -0.016 4.016 4 O -0.212 6.212 5 C 0.080 3.920 6 C -0.245 4.245 7 C -0.113 4.113 8 C -0.183 4.183 9 C -0.112 4.112 10 C -0.142 4.142 11 C 0.066 3.934 12 N -0.290 5.290 13 C -0.368 4.368 14 H 0.052 0.948 15 C -0.184 4.184 16 N -0.548 5.548 17 Si 0.758 3.242 18 H -0.236 1.236 19 H -0.213 1.213 20 H -0.193 1.193 21 C 0.054 3.946 22 C -0.090 4.090 23 C -0.140 4.140 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.146 4.146 27 C -0.147 4.147 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.146 0.854 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.120 0.880 45 H 0.147 0.853 46 H 0.159 0.841 47 H 0.157 0.843 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.129 8.075 -0.104 8.154 hybrid contribution -0.995 -1.065 -0.214 1.473 sum -2.124 7.010 -0.319 7.332 Atomic orbital electron populations 1.21646 0.91571 1.02948 1.03355 1.21742 0.98219 0.95646 1.01910 1.22824 0.79644 0.97947 1.01233 1.86479 1.20411 1.26627 1.87664 1.19185 0.92431 0.84753 0.95674 1.21413 1.00213 0.92493 1.10414 1.21132 0.94934 0.96962 0.98275 1.21234 0.94114 0.98403 1.04501 1.21051 1.00045 0.91153 0.98999 1.20539 0.92281 0.97939 1.03452 1.19717 0.94375 0.90855 0.88473 1.43746 1.25312 1.48862 1.11056 1.18689 1.14288 1.03711 1.00066 0.94819 1.25447 0.99103 0.96897 0.96958 1.69837 1.42389 1.31185 1.11381 0.86161 0.81243 0.79406 0.77391 1.23575 1.21278 1.19297 1.20017 0.86306 0.94005 0.94256 1.20948 0.95215 0.97668 0.95184 1.21029 0.97634 0.95058 1.00254 1.21312 0.94734 0.99274 0.99787 1.21292 0.99457 0.98102 0.97069 1.21339 0.98721 0.94818 0.99739 1.21114 0.94574 1.00488 0.98536 0.90542 0.91295 0.91674 0.93289 0.92864 0.91186 0.92061 0.84777 0.83463 0.83750 0.85400 0.89922 0.95735 0.94584 0.92435 0.94014 0.88020 0.85263 0.84115 0.84304 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.91 71.98 0.71 -2.70 16 2 C -0.14 -4.84 5.46 30.60 0.17 -4.67 16 3 C 0.06 2.04 4.74 71.98 0.34 2.38 16 4 O -0.30 -13.28 7.60 -92.46 -0.70 -13.99 16 5 C 0.13 5.19 6.66 22.51 0.15 5.34 16 6 C -0.23 -7.45 9.04 22.37 0.20 -7.25 16 7 C -0.09 -2.64 10.04 22.25 0.22 -2.42 16 8 C -0.16 -4.67 10.04 22.28 0.22 -4.44 16 9 C -0.09 -3.21 9.67 22.25 0.22 -3.00 16 10 C -0.14 -5.84 5.48 -19.77 -0.11 -5.95 16 11 C 0.19 9.19 5.08 85.64 0.43 9.63 16 12 N -0.57 -28.17 2.38 -710.69 -1.69 -29.86 16 13 C -0.24 -12.84 8.48 84.03 0.71 -12.12 16 14 H 0.03 1.92 7.83 -2.91 -0.02 1.90 16 15 C 0.01 0.79 4.53 84.86 0.38 1.17 16 16 N -0.90 -52.26 11.00 21.65 0.24 -52.03 16 17 Si 0.93 45.36 25.88 68.60 1.78 47.14 16 18 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 19 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 20 H -0.27 -12.51 6.36 99.48 0.63 -11.88 16 21 C 0.18 7.73 5.79 85.63 0.50 8.23 16 22 C -0.09 -3.63 5.46 -19.86 -0.11 -3.74 16 23 C -0.12 -4.97 9.71 22.27 0.22 -4.75 16 24 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 25 C -0.14 -4.50 10.05 22.27 0.22 -4.27 16 26 C -0.13 -4.19 10.05 22.27 0.22 -3.97 16 27 C -0.13 -4.78 9.69 22.27 0.22 -4.57 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 2.00 3.65 -2.39 -0.01 1.99 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.07 7.65 -2.38 -0.02 2.05 16 34 H 0.06 1.95 7.67 -2.39 -0.02 1.93 16 35 H 0.13 3.76 6.30 -2.91 -0.02 3.74 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 38 H 0.13 3.93 8.04 -2.91 -0.02 3.90 16 39 H 0.08 4.65 5.07 -2.38 -0.01 4.64 16 40 H 0.02 1.13 7.93 -2.39 -0.02 1.11 16 41 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.06 2.24 7.99 -2.39 -0.02 2.22 16 43 H 0.04 1.80 8.01 -2.39 -0.02 1.78 16 44 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 45 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 46 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 47 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 48 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -65.23 384.79 5.63 -59.61 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.85 Total: 30.72 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 5.15 Total: -41.59 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.45 Total: -81.88 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.70 Total: -13.99 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.78 Total: 47.14 kcal Total: -65.23 5.63 -59.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139001815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.114 kcal (2) G-P(sol) polarization free energy of solvation -65.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds