Wall clock time and date at job start Sat Apr 11 2020 01:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35659 * 116.99845 * 2 1 4 4 C 1.38046 * 120.21466 * 0.23177 * 3 2 1 5 5 C 1.39219 * 119.97697 * 180.27720 * 4 3 2 6 6 N 1.38925 * 119.79390 * 179.76231 * 5 4 3 7 7 C 1.46500 * 119.99977 * 179.72147 * 6 5 4 8 8 H 1.09002 * 109.46715 * 35.00310 * 7 6 5 9 9 C 1.52995 * 109.47416 * 275.00421 * 7 6 5 10 10 C 1.52996 * 109.46845 * 155.00152 * 7 6 5 11 11 C 1.53001 * 109.47392 * 295.00312 * 10 7 6 12 12 C 1.50704 * 109.47020 * 179.97438 * 11 10 7 13 13 C 1.38230 * 120.00243 * 269.72716 * 12 11 10 14 14 C 1.38232 * 119.99669 * 179.76668 * 13 12 11 15 15 C 1.38234 * 120.00290 * 0.50662 * 14 13 12 16 16 C 1.38229 * 119.99995 * 359.74865 * 15 14 13 17 17 C 1.38238 * 119.99391 * 90.00412 * 12 11 10 18 18 C 1.39714 * 120.40553 * 359.48921 * 5 4 3 19 19 C 1.36227 * 120.43595 * 0.25552 * 18 5 4 20 20 C 1.40861 * 120.00322 * 359.97438 * 19 18 5 21 21 C 1.40967 * 120.19836 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99696 * 204.86056 * 21 20 19 23 23 C 1.39843 * 120.00262 * 24.85008 * 21 20 19 24 24 N 1.30957 * 119.99768 * 17.84673 * 23 21 20 25 25 Si 1.86798 * 120.00365 * 197.84818 * 23 21 20 26 26 H 1.48507 * 109.46805 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47116 * 119.99819 * 25 23 21 28 28 H 1.48498 * 109.47247 * 240.00206 * 25 23 21 29 29 H 1.09006 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46985 * 299.99972 * 1 2 3 31 31 H 1.08997 * 109.47264 * 59.99890 * 1 2 3 32 32 H 1.07994 * 120.01235 * 0.02562 * 4 3 2 33 33 H 0.96999 * 120.00000 * 359.73126 * 6 5 4 34 34 H 1.09000 * 109.47275 * 179.97438 * 9 7 6 35 35 H 1.09004 * 109.47178 * 60.00171 * 9 7 6 36 36 H 1.08996 * 109.47410 * 299.99971 * 9 7 6 37 37 H 1.09001 * 109.47031 * 55.00971 * 10 7 6 38 38 H 1.09004 * 109.47279 * 175.00290 * 10 7 6 39 39 H 1.08996 * 109.46970 * 299.99972 * 11 10 7 40 40 H 1.08994 * 109.47073 * 60.00307 * 11 10 7 41 41 H 1.08003 * 120.00070 * 0.02562 * 13 12 11 42 42 H 1.08003 * 120.00052 * 180.22807 * 14 13 12 43 43 H 1.08000 * 119.99833 * 179.72177 * 15 14 13 44 44 H 1.07998 * 120.00426 * 179.97438 * 16 15 14 45 45 H 1.07998 * 120.00311 * 359.97438 * 17 12 11 46 46 H 1.08008 * 119.78231 * 180.27807 * 18 5 4 47 47 H 1.07998 * 119.99722 * 180.02562 * 19 18 5 48 48 H 0.96998 * 119.99756 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2974 2.3693 0.0048 5 6 1.9345 3.6071 -0.0010 6 7 1.1784 4.7726 -0.0011 7 6 1.8442 6.0776 -0.0011 8 1 2.7592 6.0186 -0.5906 9 6 2.1879 6.4748 1.4358 10 6 0.9114 7.1259 -0.6108 11 6 0.6674 6.7960 -2.0848 12 6 -0.2519 7.8283 -2.6851 13 6 -1.6202 7.6336 -2.6597 14 6 -2.4635 8.5828 -3.2061 15 6 -1.9381 9.7217 -3.7872 16 6 -0.5696 9.9139 -3.8173 17 6 0.2736 8.9672 -3.2663 18 6 3.3295 3.6844 -0.0011 19 6 4.0835 2.5498 -0.0006 20 6 3.4574 1.2880 0.0005 21 6 4.2336 0.1113 0.0004 22 1 3.8222 -0.8069 -0.3921 23 6 5.5364 0.1330 0.5084 24 7 5.9189 1.1130 1.2882 25 14 6.7310 -1.2360 0.0745 26 1 6.0585 -2.2160 -0.8159 27 1 7.9097 -0.6619 -0.6227 28 1 7.1744 -1.9182 1.3168 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2187 2.3170 0.0090 33 1 0.2097 4.7223 -0.0011 34 1 2.6837 7.4456 1.4358 35 1 2.8525 5.7279 1.8702 36 1 1.2730 6.5338 2.0253 37 1 -0.0381 7.1225 -0.0756 38 1 1.3703 8.1114 -0.5303 39 1 1.6170 6.7994 -2.6199 40 1 0.2085 5.8106 -2.1654 41 1 -2.0305 6.7419 -2.2093 42 1 -3.5328 8.4325 -3.1830 43 1 -2.5969 10.4612 -4.2181 44 1 -0.1590 10.8035 -4.2716 45 1 1.3429 9.1173 -3.2897 46 1 3.8133 4.6501 -0.0011 47 1 5.1613 2.6178 -0.0002 48 1 6.8224 1.1279 1.6408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161612685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:33 Heat of formation + Delta-G solvation = -2.252626 kcal Electronic energy + Delta-G solvation = -26520.068798 eV Core-core repulsion = 22925.281308 eV Total energy + Delta-G solvation = -3594.787490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.51319 -38.76566 -37.43044 -35.65984 -33.92857 -32.71858 -31.04532 -30.85697 -28.87595 -28.49591 -28.02338 -26.44089 -24.50892 -23.77388 -22.72281 -21.55772 -21.02357 -20.70963 -19.48663 -17.34155 -16.91512 -16.79558 -15.79185 -15.47037 -15.28801 -14.91997 -14.80216 -14.57865 -14.22905 -13.84916 -13.72244 -13.59686 -13.37307 -13.07285 -12.75426 -12.68494 -12.61892 -12.20286 -11.89088 -11.72458 -11.49953 -11.41156 -11.27947 -11.19486 -11.04269 -10.93453 -10.80133 -10.53079 -10.50193 -10.37769 -10.17787 -9.66139 -9.44998 -9.08954 -9.08560 -8.81263 -8.35237 -7.09205 -6.58477 -6.34340 -3.88594 1.20848 1.23641 2.93476 3.04900 3.21173 3.28016 3.35454 3.62676 4.13746 4.25153 4.58897 4.60118 4.69772 4.80378 4.82209 4.94958 5.08386 5.17412 5.25285 5.37511 5.41651 5.62394 5.70238 5.72436 5.80956 5.81068 5.83991 5.90207 5.92178 5.95546 6.01087 6.03823 6.19369 6.21040 6.29339 6.31411 6.34229 6.46271 6.54924 6.58655 6.80910 6.85974 7.08043 7.16931 7.38614 7.55934 7.79690 8.00778 8.18406 8.44252 8.59608 8.71393 8.89644 9.08658 9.26527 10.46304 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.002513 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.866380 B =11140.552051 C =11800.583431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.048 3.952 4 C -0.245 4.245 5 C 0.132 3.868 6 N -0.752 5.752 7 C 0.159 3.841 8 H 0.074 0.926 9 C -0.168 4.168 10 C -0.116 4.116 11 C -0.081 4.081 12 C -0.074 4.074 13 C -0.118 4.118 14 C -0.120 4.120 15 C -0.131 4.131 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.191 4.191 19 C -0.102 4.102 20 C 0.060 3.940 21 C -0.449 4.449 22 H 0.076 0.924 23 C 0.071 3.929 24 N -0.813 5.813 25 Si 0.902 3.098 26 H -0.263 1.263 27 H -0.276 1.276 28 H -0.278 1.278 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.094 0.906 33 H 0.382 0.618 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.091 0.909 47 H 0.125 0.875 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 14.525 -5.762 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.224 6.224 3 C 0.003 3.997 4 C -0.268 4.268 5 C 0.034 3.966 6 N -0.387 5.387 7 C 0.052 3.948 8 H 0.092 0.908 9 C -0.227 4.227 10 C -0.154 4.154 11 C -0.118 4.118 12 C -0.074 4.074 13 C -0.136 4.136 14 C -0.138 4.138 15 C -0.149 4.149 16 C -0.138 4.138 17 C -0.137 4.137 18 C -0.213 4.213 19 C -0.122 4.122 20 C 0.056 3.944 21 C -0.481 4.481 22 H 0.095 0.905 23 C -0.143 4.143 24 N -0.441 5.441 25 Si 0.727 3.273 26 H -0.187 1.187 27 H -0.201 1.201 28 H -0.204 1.204 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.214 0.786 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.109 0.891 47 H 0.142 0.858 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.050 14.510 -5.630 19.087 hybrid contribution -0.128 -0.351 -0.009 0.373 sum -11.177 14.159 -5.639 18.900 Atomic orbital electron populations 1.22703 0.81974 1.01539 0.99780 1.85992 1.18035 1.28354 1.90026 1.18979 0.92186 0.82111 1.06403 1.20045 0.96997 0.91555 1.18154 1.17022 0.90414 0.84694 1.04498 1.44000 1.06212 1.01982 1.86478 1.20634 0.95718 0.83261 0.95190 0.90783 1.22303 1.01582 1.00899 0.97903 1.21829 1.00102 0.98882 0.94549 1.20634 0.98586 0.97150 0.95463 1.20064 0.94263 0.95734 0.97320 1.21100 0.93071 0.99412 1.00055 1.21142 0.99633 0.94417 0.98565 1.21109 0.95337 0.97926 1.00555 1.21138 0.93685 0.99143 0.99817 1.21103 0.99860 0.94048 0.98736 1.20043 0.91345 0.97713 1.12166 1.20713 0.99531 0.90304 1.01681 1.16927 0.87069 0.94073 0.96301 1.19227 0.96701 0.96513 1.35615 0.90541 1.25761 0.98845 0.96607 0.93071 1.69879 1.18790 1.31360 1.24117 0.86364 0.80231 0.81618 0.79044 1.18651 1.20100 1.20406 0.90204 0.94278 0.94361 0.88769 0.78582 0.92978 0.91695 0.93142 0.91856 0.91171 0.90873 0.90329 0.86127 0.86301 0.86423 0.86296 0.86092 0.89071 0.85763 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.31 -7.32 9.78 -18.68 -0.18 -7.50 16 3 C 0.05 1.22 6.71 -38.42 -0.26 0.96 16 4 C -0.24 -5.38 8.86 -39.29 -0.35 -5.73 16 5 C 0.13 2.75 6.64 -83.73 -0.56 2.19 16 6 N -0.75 -12.17 4.67 -52.07 -0.24 -12.41 16 7 C 0.16 2.19 2.26 -67.93 -0.15 2.03 16 8 H 0.07 1.12 6.44 -51.93 -0.33 0.78 16 9 C -0.17 -2.30 9.40 37.15 0.35 -1.95 16 10 C -0.12 -1.27 4.73 -26.73 -0.13 -1.39 16 11 C -0.08 -0.90 5.23 -27.88 -0.15 -1.05 16 12 C -0.07 -0.79 5.13 -104.62 -0.54 -1.33 16 13 C -0.12 -1.21 9.70 -39.59 -0.38 -1.59 16 14 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 15 C -0.13 -1.16 10.05 -39.59 -0.40 -1.56 16 16 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 17 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 18 C -0.19 -4.33 8.73 -39.75 -0.35 -4.67 16 19 C -0.10 -2.64 8.62 -39.31 -0.34 -2.98 16 20 C 0.06 1.63 5.58 -106.64 -0.60 1.03 16 21 C -0.45 -12.53 8.70 -37.95 -0.33 -12.86 16 22 H 0.08 2.14 7.65 -52.49 -0.40 1.74 16 23 C 0.07 1.87 5.13 -17.32 -0.09 1.78 16 24 N -0.81 -21.78 10.97 55.54 0.61 -21.17 16 25 Si 0.90 19.77 29.60 -169.99 -5.03 14.74 16 26 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 31 H 0.04 0.61 7.67 -51.93 -0.40 0.21 16 32 H 0.09 1.83 6.29 -52.49 -0.33 1.50 16 33 H 0.38 5.57 8.60 -40.82 -0.35 5.22 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.06 7.66 -51.93 -0.40 0.66 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 41 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.09 1.88 6.03 -52.48 -0.32 1.57 16 47 H 0.12 3.34 6.16 -52.49 -0.32 3.02 16 48 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 LS Contribution 390.68 15.07 5.89 5.89 Total: -1.00 -29.61 390.68 -10.84 -40.45 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.43 Total: 10.07 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -4.45 Total: -30.07 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.37 Total: -33.58 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.18 Total: -7.50 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.61 -10.84 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161612685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.195 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds