Wall clock time and date at job start Sat Apr 11 2020 01:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35659 * 116.99845 * 2 1 4 4 C 1.38046 * 120.21466 * 0.23177 * 3 2 1 5 5 C 1.39219 * 119.97697 * 180.27720 * 4 3 2 6 6 N 1.38925 * 119.79390 * 179.76231 * 5 4 3 7 7 C 1.46500 * 119.99977 * 179.72147 * 6 5 4 8 8 H 1.09002 * 109.46715 * 35.00310 * 7 6 5 9 9 C 1.52995 * 109.47416 * 275.00421 * 7 6 5 10 10 C 1.52996 * 109.46845 * 155.00152 * 7 6 5 11 11 C 1.53001 * 109.47392 * 295.00312 * 10 7 6 12 12 C 1.50704 * 109.47020 * 179.97438 * 11 10 7 13 13 C 1.38230 * 120.00243 * 269.72716 * 12 11 10 14 14 C 1.38232 * 119.99669 * 179.76668 * 13 12 11 15 15 C 1.38234 * 120.00290 * 0.50662 * 14 13 12 16 16 C 1.38229 * 119.99995 * 359.74865 * 15 14 13 17 17 C 1.38238 * 119.99391 * 90.00412 * 12 11 10 18 18 C 1.39714 * 120.40553 * 359.48921 * 5 4 3 19 19 C 1.36227 * 120.43595 * 0.25552 * 18 5 4 20 20 C 1.40861 * 120.00322 * 359.97438 * 19 18 5 21 21 C 1.40967 * 120.19836 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99696 * 204.86056 * 21 20 19 23 23 C 1.39843 * 120.00262 * 24.85008 * 21 20 19 24 24 N 1.30957 * 119.99768 * 17.84673 * 23 21 20 25 25 Si 1.86798 * 120.00365 * 197.84818 * 23 21 20 26 26 H 1.48507 * 109.46805 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47116 * 119.99819 * 25 23 21 28 28 H 1.48498 * 109.47247 * 240.00206 * 25 23 21 29 29 H 1.09006 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46985 * 299.99972 * 1 2 3 31 31 H 1.08997 * 109.47264 * 59.99890 * 1 2 3 32 32 H 1.07994 * 120.01235 * 0.02562 * 4 3 2 33 33 H 0.96999 * 120.00000 * 359.73126 * 6 5 4 34 34 H 1.09000 * 109.47275 * 179.97438 * 9 7 6 35 35 H 1.09004 * 109.47178 * 60.00171 * 9 7 6 36 36 H 1.08996 * 109.47410 * 299.99971 * 9 7 6 37 37 H 1.09001 * 109.47031 * 55.00971 * 10 7 6 38 38 H 1.09004 * 109.47279 * 175.00290 * 10 7 6 39 39 H 1.08996 * 109.46970 * 299.99972 * 11 10 7 40 40 H 1.08994 * 109.47073 * 60.00307 * 11 10 7 41 41 H 1.08003 * 120.00070 * 0.02562 * 13 12 11 42 42 H 1.08003 * 120.00052 * 180.22807 * 14 13 12 43 43 H 1.08000 * 119.99833 * 179.72177 * 15 14 13 44 44 H 1.07998 * 120.00426 * 179.97438 * 16 15 14 45 45 H 1.07998 * 120.00311 * 359.97438 * 17 12 11 46 46 H 1.08008 * 119.78231 * 180.27807 * 18 5 4 47 47 H 1.07998 * 119.99722 * 180.02562 * 19 18 5 48 48 H 0.96998 * 119.99756 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2974 2.3693 0.0048 5 6 1.9345 3.6071 -0.0010 6 7 1.1784 4.7726 -0.0011 7 6 1.8442 6.0776 -0.0011 8 1 2.7592 6.0186 -0.5906 9 6 2.1879 6.4748 1.4358 10 6 0.9114 7.1259 -0.6108 11 6 0.6674 6.7960 -2.0848 12 6 -0.2519 7.8283 -2.6851 13 6 -1.6202 7.6336 -2.6597 14 6 -2.4635 8.5828 -3.2061 15 6 -1.9381 9.7217 -3.7872 16 6 -0.5696 9.9139 -3.8173 17 6 0.2736 8.9672 -3.2663 18 6 3.3295 3.6844 -0.0011 19 6 4.0835 2.5498 -0.0006 20 6 3.4574 1.2880 0.0005 21 6 4.2336 0.1113 0.0004 22 1 3.8222 -0.8069 -0.3921 23 6 5.5364 0.1330 0.5084 24 7 5.9189 1.1130 1.2882 25 14 6.7310 -1.2360 0.0745 26 1 6.0585 -2.2160 -0.8159 27 1 7.9097 -0.6619 -0.6227 28 1 7.1744 -1.9182 1.3168 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2187 2.3170 0.0090 33 1 0.2097 4.7223 -0.0011 34 1 2.6837 7.4456 1.4358 35 1 2.8525 5.7279 1.8702 36 1 1.2730 6.5338 2.0253 37 1 -0.0381 7.1225 -0.0756 38 1 1.3703 8.1114 -0.5303 39 1 1.6170 6.7994 -2.6199 40 1 0.2085 5.8106 -2.1654 41 1 -2.0305 6.7419 -2.2093 42 1 -3.5328 8.4325 -3.1830 43 1 -2.5969 10.4612 -4.2181 44 1 -0.1590 10.8035 -4.2716 45 1 1.3429 9.1173 -3.2897 46 1 3.8133 4.6501 -0.0011 47 1 5.1613 2.6178 -0.0002 48 1 6.8224 1.1279 1.6408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161612685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:31 Heat of formation + Delta-G solvation = -16.162781 kcal Electronic energy + Delta-G solvation = -26520.671987 eV Core-core repulsion = 22925.281308 eV Total energy + Delta-G solvation = -3595.390680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.58748 -40.16505 -38.85839 -37.24287 -35.49233 -34.01339 -32.30721 -31.72638 -30.63328 -29.86937 -29.27001 -27.98957 -26.11102 -24.90995 -23.41530 -23.05667 -22.55030 -21.75170 -20.93794 -19.21604 -18.49467 -17.60509 -17.28891 -16.74192 -16.54722 -16.20337 -16.05047 -16.02585 -15.66355 -15.51763 -14.76332 -14.55820 -14.39395 -14.28947 -14.00991 -13.97480 -13.78273 -13.58016 -13.49214 -13.08791 -12.88284 -12.76282 -12.61867 -12.44106 -12.37368 -12.19691 -12.07801 -12.00958 -11.70620 -11.63145 -11.56058 -11.36131 -11.28657 -10.96866 -10.12436 -9.78366 -9.53536 -8.90026 -8.48307 -8.12484 -5.86716 0.49466 0.53762 1.13029 1.16147 1.40600 1.54987 1.57713 2.31915 2.81618 2.89291 2.91696 3.02496 3.72287 3.82102 3.96990 4.13504 4.21645 4.23905 4.30215 4.36531 4.40116 4.49273 4.49800 4.51295 4.68163 4.70043 4.73328 4.74804 4.76125 4.82368 4.91370 4.99034 5.06137 5.11975 5.18979 5.23658 5.28514 5.34449 5.40854 5.45176 5.50101 5.62320 5.66377 5.67279 5.79796 5.92484 6.12216 6.17480 6.32700 6.54700 6.88111 6.96318 7.12141 7.23080 7.42597 8.56075 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.002513 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.866380 B =11140.552051 C =11800.583431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C 0.044 3.956 4 C -0.254 4.254 5 C 0.161 3.839 6 N -0.739 5.739 7 C 0.155 3.845 8 H 0.062 0.938 9 C -0.163 4.163 10 C -0.101 4.101 11 C -0.075 4.075 12 C -0.088 4.088 13 C -0.132 4.132 14 C -0.127 4.127 15 C -0.136 4.136 16 C -0.126 4.126 17 C -0.132 4.132 18 C -0.204 4.204 19 C -0.114 4.114 20 C 0.009 3.991 21 C -0.487 4.487 22 H 0.059 0.941 23 C 0.029 3.971 24 N -0.847 5.847 25 Si 0.972 3.028 26 H -0.266 1.266 27 H -0.265 1.265 28 H -0.270 1.270 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.125 0.875 33 H 0.395 0.605 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.125 0.875 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.519 16.475 -6.252 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.254 6.254 3 C -0.001 4.001 4 C -0.277 4.277 5 C 0.060 3.940 6 N -0.372 5.372 7 C 0.050 3.950 8 H 0.080 0.920 9 C -0.222 4.222 10 C -0.139 4.139 11 C -0.113 4.113 12 C -0.088 4.088 13 C -0.150 4.150 14 C -0.145 4.145 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.150 4.150 18 C -0.226 4.226 19 C -0.134 4.134 20 C 0.006 3.994 21 C -0.519 4.519 22 H 0.077 0.923 23 C -0.182 4.182 24 N -0.477 5.477 25 Si 0.794 3.206 26 H -0.190 1.190 27 H -0.189 1.189 28 H -0.195 1.195 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.146 0.854 46 H 0.126 0.874 47 H 0.122 0.878 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.113 16.503 -6.120 21.949 hybrid contribution 0.245 -0.772 0.109 0.817 sum -12.869 15.730 -6.011 21.194 Atomic orbital electron populations 1.23057 0.78727 1.04001 1.00906 1.85938 1.21469 1.28122 1.89905 1.19184 0.92009 0.83589 1.05365 1.20306 0.98444 0.90878 1.18058 1.17121 0.90134 0.86118 1.00647 1.44069 1.06755 1.01552 1.84842 1.20807 0.95925 0.82696 0.95589 0.91991 1.22242 1.01533 1.01197 0.97256 1.21706 0.99743 0.98290 0.94196 1.20529 0.98338 0.96842 0.95556 1.20054 0.94439 0.95985 0.98312 1.21272 0.93129 1.00044 1.00581 1.21428 1.00604 0.94301 0.98155 1.21452 0.95696 0.98220 0.99999 1.21439 0.93912 0.99602 0.99459 1.21297 1.00569 0.94184 0.98949 1.20161 0.92295 0.97446 1.12717 1.20629 0.98931 0.91197 1.02645 1.17259 0.88729 0.94471 0.98931 1.19281 0.98419 0.96332 1.37880 0.92318 1.26501 0.99942 0.99185 0.92527 1.69934 1.19432 1.33183 1.25109 0.85317 0.77913 0.78493 0.78856 1.18953 1.18947 1.19503 0.87305 0.93216 0.92861 0.85717 0.77077 0.90580 0.94770 0.92256 0.90961 0.89610 0.91567 0.91536 0.85659 0.84518 0.84262 0.84370 0.85369 0.87416 0.87789 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.81 113.37 1.11 2.04 16 2 O -0.34 -16.24 9.78 -89.75 -0.88 -17.12 16 3 C 0.04 2.26 6.71 23.02 0.15 2.41 16 4 C -0.25 -10.96 8.86 22.46 0.20 -10.76 16 5 C 0.16 6.58 6.64 38.61 0.26 6.84 16 6 N -0.74 -22.40 4.67 -318.66 -1.49 -23.88 16 7 C 0.16 3.98 2.26 44.99 0.10 4.08 16 8 H 0.06 1.78 6.44 -2.39 -0.02 1.77 16 9 C -0.16 -4.13 9.40 71.98 0.68 -3.46 16 10 C -0.10 -1.96 4.73 30.59 0.14 -1.81 16 11 C -0.08 -1.55 5.23 29.85 0.16 -1.39 16 12 C -0.09 -1.72 5.13 -19.86 -0.10 -1.82 16 13 C -0.13 -2.44 9.70 22.27 0.22 -2.23 16 14 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 15 C -0.14 -2.04 10.05 22.27 0.22 -1.81 16 16 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 17 C -0.13 -2.38 9.70 22.27 0.22 -2.17 16 18 C -0.20 -9.40 8.73 22.16 0.19 -9.21 16 19 C -0.11 -6.17 8.62 22.44 0.19 -5.98 16 20 C 0.01 0.53 5.58 -21.17 -0.12 0.41 16 21 C -0.49 -28.75 8.70 23.33 0.20 -28.55 16 22 H 0.06 3.51 7.65 -2.91 -0.02 3.49 16 23 C 0.03 1.57 5.13 85.21 0.44 2.01 16 24 N -0.85 -47.49 10.97 21.82 0.24 -47.25 16 25 Si 0.97 42.18 29.60 68.60 2.03 44.21 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 30 H 0.05 1.52 7.65 -2.39 -0.02 1.51 16 31 H 0.05 1.59 7.67 -2.39 -0.02 1.57 16 32 H 0.13 4.53 6.29 -2.91 -0.02 4.51 16 33 H 0.39 10.35 8.60 -92.71 -0.80 9.55 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.03 1.07 7.66 -2.38 -0.02 1.05 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.44 16 39 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 40 H 0.07 1.51 7.69 -2.39 -0.02 1.49 16 41 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 46 H 0.11 4.50 6.03 -2.91 -0.02 4.48 16 47 H 0.10 5.96 6.16 -2.91 -0.02 5.94 16 48 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 Total: -1.00 -67.89 390.68 4.77 -63.12 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.16 Total: 35.91 kcal Atomic # 6 Polarization: -59.70 SS G_CDS: 4.71 Total: -54.98 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.25 Total: -71.13 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.88 Total: -17.12 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -67.89 4.77 -63.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161612685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.957 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds