Wall clock time and date at job start Sat Apr 11 2020 01:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47285 * 2 1 4 4 C 1.53002 * 109.47209 * 119.99725 * 2 1 3 5 5 C 1.53001 * 109.47029 * 184.99774 * 4 2 1 6 6 C 1.50707 * 109.46985 * 180.02562 * 5 4 2 7 7 C 1.38232 * 119.99704 * 269.72856 * 6 5 4 8 8 C 1.38242 * 119.99511 * 179.76702 * 7 6 5 9 9 C 1.38229 * 119.99934 * 0.50340 * 8 7 6 10 10 C 1.38238 * 120.00334 * 359.75379 * 9 8 7 11 11 C 1.38229 * 119.99877 * 89.99899 * 6 5 4 12 12 N 1.46507 * 109.47205 * 239.99884 * 2 1 3 13 13 C 1.39938 * 119.99938 * 84.99734 * 12 2 1 14 14 C 1.38855 * 120.01688 * 179.97438 * 13 12 2 15 15 C 1.38116 * 119.97977 * 179.97438 * 14 13 12 16 16 C 1.38694 * 120.01675 * 0.28237 * 15 14 13 17 17 O 1.36007 * 119.98206 * 179.69942 * 16 15 14 18 18 C 1.42893 * 117.00152 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00123 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00531 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99432 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46748 * 90.00310 * 23 21 19 25 25 H 1.48496 * 109.47450 * 210.00291 * 23 21 19 26 26 H 1.48504 * 109.47277 * 330.00608 * 23 21 19 27 27 C 1.38701 * 120.04177 * 359.44536 * 16 15 14 28 28 C 1.38112 * 120.01746 * 0.55072 * 27 16 15 29 29 H 1.09002 * 109.47055 * 299.99980 * 1 2 3 30 30 H 1.09003 * 109.47507 * 59.99779 * 1 2 3 31 31 H 1.09003 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47354 * 304.99854 * 4 2 1 33 33 H 1.09001 * 109.46931 * 65.00428 * 4 2 1 34 34 H 1.09000 * 109.47641 * 300.00251 * 5 4 2 35 35 H 1.08997 * 109.46947 * 60.00072 * 5 4 2 36 36 H 1.08001 * 120.00484 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.99522 * 180.23198 * 8 7 6 38 38 H 1.08006 * 120.00203 * 179.72649 * 9 8 7 39 39 H 1.08003 * 120.00063 * 179.97438 * 10 9 8 40 40 H 1.08002 * 120.00384 * 0.02562 * 11 6 5 41 41 H 0.97000 * 119.99374 * 265.00100 * 12 2 1 42 42 H 1.08000 * 120.01074 * 359.96010 * 14 13 12 43 43 H 1.08002 * 119.98804 * 179.97438 * 15 14 13 44 44 H 1.08999 * 109.47530 * 300.00107 * 18 17 16 45 45 H 1.09000 * 109.47277 * 60.00344 * 18 17 16 46 46 H 0.97000 * 119.99295 * 180.02562 * 22 21 19 47 47 H 1.07999 * 119.99606 * 180.25647 * 27 16 15 48 48 H 1.07993 * 120.01341 * 179.70378 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5439 7 6 4.2046 -0.6336 3.7334 8 6 4.6609 -1.2869 4.8631 9 6 4.9896 -2.6281 4.8004 10 6 4.8572 -3.3174 3.6095 11 6 4.3959 -2.6653 2.4812 12 7 2.0183 -0.6907 -1.1962 13 6 2.1519 0.0074 -2.4017 14 6 2.6152 -0.6467 -3.5355 15 6 2.7463 0.0429 -4.7250 16 6 2.4208 1.3898 -4.7856 17 8 2.5559 2.0696 -5.9558 18 6 2.2019 3.4540 -5.9464 19 6 2.4147 4.0362 -7.3200 20 1 2.7838 3.4116 -8.1201 21 6 2.1382 5.3663 -7.5555 22 7 1.6892 6.1270 -6.5811 23 14 2.4026 6.0881 -9.2580 24 1 1.1578 5.9448 -10.0551 25 1 2.7502 7.5267 -9.1372 26 1 3.5098 5.3664 -9.9351 27 6 1.9525 2.0426 -3.6550 28 6 1.8208 1.3545 -2.4647 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4260 35 1 3.8531 0.4370 1.3572 36 1 3.9523 0.4154 3.7812 37 1 4.7647 -0.7483 5.7934 38 1 5.3503 -3.1375 5.6819 39 1 5.1145 -4.3652 3.5605 40 1 4.2931 -3.2037 1.5506 41 1 2.2489 -1.6318 -1.1525 42 1 2.8733 -1.6943 -3.4872 43 1 3.1071 -0.4656 -5.6068 44 1 1.1539 3.5592 -5.6660 45 1 2.8257 3.9837 -5.2263 46 1 1.4943 7.0627 -6.7469 47 1 1.6954 3.0903 -3.7041 48 1 1.4607 1.8641 -1.5832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161616711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:35 Heat of formation + Delta-G solvation = -6.529084 kcal Electronic energy + Delta-G solvation = -25613.912394 eV Core-core repulsion = 22018.939462 eV Total energy + Delta-G solvation = -3594.972931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.76485 -39.36527 -37.81860 -36.03529 -33.60059 -32.80710 -31.27762 -31.19493 -30.49200 -28.71907 -28.00900 -26.63197 -24.37113 -23.45944 -22.88324 -22.38525 -21.24395 -20.88297 -20.28161 -17.59741 -17.08626 -16.62757 -16.51103 -15.93149 -15.50293 -15.35688 -14.76210 -14.52707 -14.42580 -14.13463 -13.99944 -13.81397 -13.60461 -13.38811 -13.13680 -13.08430 -12.79194 -12.64844 -12.24918 -12.15858 -11.82424 -11.73438 -11.53452 -11.49159 -11.33098 -11.04725 -11.00545 -10.91519 -10.83779 -10.39863 -10.31876 -10.06195 -9.23747 -9.18468 -9.06365 -8.92399 -8.53253 -8.41862 -6.57968 -6.19568 -4.22411 1.04552 1.08430 1.84559 2.22508 3.27181 3.32146 3.37393 3.46494 3.57595 4.25355 4.32903 4.39453 4.51691 4.66702 4.71054 4.76660 4.80878 4.86110 4.93080 5.13736 5.17518 5.22099 5.28375 5.38839 5.39511 5.40759 5.45232 5.56124 5.63110 5.71798 5.75830 5.82626 5.87883 5.94024 5.97885 6.09162 6.15341 6.16826 6.20063 6.35248 6.46713 6.65727 6.70007 6.72907 6.90717 7.13102 7.22582 7.25150 7.64818 7.74926 7.96765 8.04577 8.62930 8.93919 9.42688 10.91799 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.001834 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.067680 B =15259.705730 C =15400.104810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.152 3.848 3 H 0.077 0.923 4 C -0.117 4.117 5 C -0.082 4.082 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.118 4.118 12 N -0.750 5.750 13 C 0.160 3.840 14 C -0.157 4.157 15 C -0.124 4.124 16 C 0.102 3.898 17 O -0.323 6.323 18 C 0.195 3.805 19 C -0.521 4.521 20 H 0.069 0.931 21 C 0.059 3.941 22 N -0.896 5.896 23 Si 0.912 3.088 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.271 1.271 27 C -0.166 4.166 28 C -0.154 4.154 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.392 0.608 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.266 0.734 47 H 0.131 0.869 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 -17.291 23.167 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.046 3.954 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.119 4.119 6 C -0.077 4.077 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.136 4.136 12 N -0.384 5.384 13 C 0.060 3.940 14 C -0.179 4.179 15 C -0.144 4.144 16 C 0.054 3.946 17 O -0.237 6.237 18 C 0.122 3.878 19 C -0.559 4.559 20 H 0.088 0.912 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.739 3.261 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.186 4.186 28 C -0.176 4.176 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.226 0.774 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.076 0.924 47 H 0.148 0.852 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.332 -16.998 23.122 28.793 hybrid contribution 0.044 0.333 -0.524 0.623 sum 2.376 -16.665 22.598 28.179 Atomic orbital electron populations 1.22305 0.96256 1.02116 1.02181 1.20805 0.93263 0.96949 0.84367 0.90458 1.21836 0.94712 1.01308 0.97620 1.20636 0.95518 1.00654 0.95090 1.19989 0.98239 0.94103 0.95398 1.21101 1.00054 0.99976 0.92543 1.21159 0.99289 0.94853 0.98398 1.21142 1.00840 0.94780 0.97940 1.21158 0.99616 0.99869 0.93068 1.21081 0.99670 0.94278 0.98588 1.44484 1.75603 1.11594 1.06729 1.17547 0.98785 0.91548 0.86085 1.20226 1.06818 0.99192 0.91653 1.20155 1.04229 0.92067 0.97921 1.19060 0.96936 0.92017 0.86630 1.86102 1.81566 1.27194 1.28831 1.20540 0.95310 0.73235 0.98725 1.21004 1.44995 0.94856 0.95070 0.91236 1.24938 0.94838 0.96413 0.98118 1.69960 1.44395 1.07063 1.31986 0.86263 0.78762 0.78051 0.83014 1.20342 1.20971 1.19523 1.21256 1.03696 1.01010 0.92604 1.20408 1.06577 0.92760 0.97887 0.92275 0.91883 0.92637 0.90677 0.91486 0.90425 0.90803 0.86073 0.86196 0.86314 0.86210 0.86139 0.77420 0.86583 0.85899 0.96396 0.96385 0.92446 0.85150 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.43 37.15 0.35 -1.20 16 2 C 0.15 1.38 2.27 -67.93 -0.15 1.23 16 3 H 0.08 0.78 6.49 -51.93 -0.34 0.44 16 4 C -0.12 -0.85 4.74 -26.73 -0.13 -0.98 16 5 C -0.08 -0.64 5.23 -27.88 -0.15 -0.79 16 6 C -0.08 -0.64 5.13 -104.62 -0.54 -1.17 16 7 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 8 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 9 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 10 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 11 C -0.12 -0.94 9.70 -39.59 -0.38 -1.32 16 12 N -0.75 -7.87 4.71 -52.12 -0.25 -8.12 16 13 C 0.16 2.27 6.64 -83.70 -0.56 1.71 16 14 C -0.16 -2.31 9.89 -39.40 -0.39 -2.70 16 15 C -0.12 -2.21 9.98 -39.46 -0.39 -2.60 16 16 C 0.10 2.15 6.69 -39.24 -0.26 1.89 16 17 O -0.32 -8.13 10.12 -19.76 -0.20 -8.33 16 18 C 0.19 5.33 4.49 36.01 0.16 5.49 16 19 C -0.52 -15.21 9.43 -34.44 -0.32 -15.54 16 20 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 22 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 23 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.17 -3.26 9.03 -39.46 -0.36 -3.61 16 28 C -0.15 -2.47 8.85 -39.40 -0.35 -2.82 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 35 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 39 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.39 3.48 8.62 -40.82 -0.35 3.13 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 43 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 44 H 0.02 0.51 7.65 -51.93 -0.40 0.11 16 45 H 0.02 0.51 7.67 -51.93 -0.40 0.12 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.13 2.71 6.29 -52.49 -0.33 2.38 16 48 H 0.12 1.64 6.11 -52.49 -0.32 1.32 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -31.15 397.18 -11.44 -42.59 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.55 Total: 2.94 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -5.14 Total: -26.06 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.49 Total: -33.69 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.20 Total: -8.33 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.15 -11.44 -42.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161616711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.058 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds