Wall clock time and date at job start Sat Apr 11 2020 01:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38233 * 119.99655 * 0.50733 * 6 5 4 8 8 C 1.50700 * 119.99988 * 179.72089 * 7 6 5 9 9 N 1.46500 * 109.47295 * 270.02456 * 8 7 6 10 10 C 1.39942 * 119.99835 * 180.02562 * 9 8 7 11 11 C 1.38858 * 120.02180 * 359.72159 * 10 9 8 12 12 C 1.38111 * 119.98067 * 179.74538 * 11 10 9 13 13 C 1.38697 * 120.01853 * 0.50965 * 12 11 10 14 14 O 1.36001 * 119.97891 * 179.74255 * 13 12 11 15 15 C 1.42905 * 117.00141 * 0.02562 * 14 13 12 16 16 C 1.50697 * 109.46982 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99892 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00097 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99509 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00273 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46928 * 90.00407 * 20 18 16 22 22 H 1.48500 * 109.47320 * 209.99844 * 20 18 16 23 23 H 1.48494 * 109.47375 * 330.00550 * 20 18 16 24 24 C 1.38702 * 120.03821 * 359.76978 * 13 12 11 25 25 C 1.38112 * 120.01740 * 359.97438 * 24 13 12 26 26 C 1.38237 * 120.00241 * 359.74632 * 7 6 5 27 27 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 35 35 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 36 36 H 1.08001 * 120.00097 * 180.22474 * 6 5 4 37 37 H 1.09002 * 109.47098 * 30.02090 * 8 7 6 38 38 H 1.09001 * 109.47321 * 150.01846 * 8 7 6 39 39 H 0.96994 * 119.99882 * 359.97438 * 9 8 7 40 40 H 1.08005 * 120.00789 * 0.02562 * 11 10 9 41 41 H 1.07999 * 119.98574 * 180.22811 * 12 11 10 42 42 H 1.09002 * 109.46744 * 300.00066 * 15 14 13 43 43 H 1.08994 * 109.46845 * 59.99963 * 15 14 13 44 44 H 0.97009 * 119.99955 * 180.02562 * 19 18 16 45 45 H 1.07995 * 119.98646 * 179.97438 * 24 13 12 46 46 H 1.08004 * 120.00653 * 179.97438 * 25 24 13 47 47 H 1.07997 * 119.99822 * 179.97438 * 26 7 6 48 48 H 1.07991 * 120.00142 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9532 -2.0140 -3.4879 8 6 3.4547 -2.7250 -4.7184 9 7 2.4892 -3.7524 -5.1164 10 6 2.7385 -4.5494 -6.2394 11 6 3.8982 -4.3628 -6.9800 12 6 4.1459 -5.1534 -8.0851 13 6 3.2318 -6.1263 -8.4613 14 8 3.4741 -6.9008 -9.5526 15 6 4.6896 -6.6578 -10.2637 16 6 4.7855 -7.6040 -11.4326 17 1 3.9972 -8.3196 -11.6141 18 6 5.8794 -7.5562 -12.2704 19 7 6.8395 -6.6851 -12.0490 20 14 5.9986 -8.7295 -13.7190 21 1 5.3697 -8.1083 -14.9122 22 1 7.4267 -9.0182 -14.0061 23 1 5.2941 -9.9948 -13.3905 24 6 2.0704 -6.3094 -7.7254 25 6 1.8236 -5.5232 -6.6170 26 6 3.2875 -2.4861 -2.2324 27 6 2.8271 -1.8343 -1.1037 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.0688 0.6339 -2.5850 36 1 1.8969 -0.5216 -4.5956 37 1 3.5757 -2.0066 -5.5292 38 1 4.4149 -3.1932 -4.5016 39 1 1.6775 -3.8807 -4.6012 40 1 4.6084 -3.6028 -6.6894 41 1 5.0496 -5.0109 -8.6590 42 1 4.6993 -5.6298 -10.6260 43 1 5.5379 -6.8164 -9.5978 44 1 7.6091 -6.6511 -12.6386 45 1 1.3590 -7.0669 -8.0193 46 1 0.9190 -5.6657 -6.0443 47 1 3.9081 -3.3644 -2.1334 48 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163822675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:44 Heat of formation + Delta-G solvation = -7.503002 kcal Electronic energy + Delta-G solvation = -25235.670446 eV Core-core repulsion = 21640.655283 eV Total energy + Delta-G solvation = -3595.015164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11057 -39.29480 -37.37950 -36.14621 -34.30326 -32.80537 -31.29219 -30.86007 -30.50366 -28.28394 -27.58576 -27.03533 -25.41442 -23.49036 -23.22192 -22.50189 -21.31735 -20.76908 -20.24680 -17.60893 -16.96042 -16.44461 -16.41964 -15.92891 -15.54759 -15.12902 -14.68537 -14.52334 -14.38549 -14.18862 -14.07619 -13.95958 -13.81839 -13.57950 -13.36833 -12.95725 -12.88274 -12.64558 -12.39309 -12.12683 -12.01842 -11.91341 -11.60047 -11.56711 -11.48683 -11.05563 -11.02043 -10.98796 -10.91878 -10.42296 -10.33000 -10.07177 -9.22029 -9.18546 -9.00012 -8.92970 -8.54028 -8.41602 -6.59622 -6.19211 -4.22148 0.93943 1.10808 1.84185 2.21523 3.27498 3.29099 3.32477 3.37745 3.86739 4.21547 4.25619 4.34449 4.39541 4.53678 4.66753 4.71092 4.71998 4.74682 4.98393 5.09731 5.13907 5.17839 5.17891 5.32736 5.37965 5.38245 5.40401 5.45639 5.46031 5.53730 5.73074 5.74895 5.78321 5.81023 5.87251 5.95588 6.03450 6.11451 6.30502 6.33945 6.45401 6.64136 6.68286 6.71863 6.90338 7.12783 7.21061 7.25396 7.61582 7.74977 7.94660 8.04732 8.62836 8.93992 9.42980 10.92133 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038124 B = 0.001646 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.271271 B =17008.682534 C =17379.842996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.118 4.118 6 C -0.098 4.098 7 C -0.105 4.105 8 C 0.171 3.829 9 N -0.753 5.753 10 C 0.156 3.844 11 C -0.154 4.154 12 C -0.166 4.166 13 C 0.103 3.897 14 O -0.323 6.323 15 C 0.194 3.806 16 C -0.522 4.522 17 H 0.070 0.930 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.912 3.088 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.124 4.124 25 C -0.155 4.155 26 C -0.098 4.098 27 C -0.121 4.121 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.115 0.885 41 H 0.132 0.868 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.266 0.734 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.124 0.876 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.273 15.426 25.451 31.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.073 4.073 5 C -0.136 4.136 6 C -0.116 4.116 7 C -0.105 4.105 8 C 0.047 3.953 9 N -0.387 5.387 10 C 0.057 3.943 11 C -0.176 4.176 12 C -0.185 4.185 13 C 0.054 3.946 14 O -0.237 6.237 15 C 0.122 3.878 16 C -0.560 4.560 17 H 0.088 0.912 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.739 3.261 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.195 1.195 24 C -0.143 4.143 25 C -0.177 4.177 26 C -0.116 4.116 27 C -0.139 4.139 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.228 0.772 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.142 0.858 46 H 0.135 0.865 47 H 0.142 0.858 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.023 15.438 25.265 31.258 hybrid contribution 0.197 -0.372 -0.572 0.710 sum -9.826 15.066 24.693 30.549 Atomic orbital electron populations 1.21861 0.94234 1.02105 1.01985 1.20149 0.96038 0.96104 0.95375 1.21859 1.01296 0.95038 1.01984 1.19902 0.97183 0.95520 0.94690 1.20958 1.00554 1.00227 0.91844 1.21106 0.96653 0.95091 0.98792 1.19918 0.99438 0.96542 0.94630 1.20057 0.92377 0.89868 0.93017 1.44390 1.24658 1.39099 1.30571 1.17565 0.94918 0.92903 0.88889 1.20379 0.97294 1.02530 0.97390 1.21250 1.00835 0.97586 0.98869 1.19063 0.94164 0.91978 0.89346 1.86104 1.44603 1.55969 1.36982 1.20550 0.79316 0.97376 0.90600 1.21005 1.06203 1.18874 1.09884 0.91224 1.24932 0.94999 0.96136 0.98194 1.69959 1.09434 1.35428 1.38577 0.86264 0.77294 0.80854 0.81694 1.20342 1.20968 1.19517 1.20159 0.96766 1.01634 0.95772 1.20232 0.99739 0.98400 0.99306 1.21105 0.99311 0.99384 0.91807 1.21054 0.98552 0.95746 0.98583 0.92360 0.92390 0.92482 0.90494 0.92399 0.92357 0.92484 0.86127 0.85857 0.91914 0.91917 0.77169 0.86677 0.85053 0.96363 0.96354 0.92443 0.85797 0.86504 0.85841 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.00 37.16 0.33 -0.42 16 2 C -0.06 -0.34 3.09 -91.77 -0.28 -0.62 16 3 C -0.14 -0.75 9.01 37.16 0.33 -0.42 16 4 C -0.07 -0.54 4.78 -104.62 -0.50 -1.04 16 5 C -0.12 -0.91 8.71 -39.58 -0.34 -1.26 16 6 C -0.10 -0.84 9.70 -39.58 -0.38 -1.22 16 7 C -0.10 -0.96 5.25 -104.62 -0.55 -1.51 16 8 C 0.17 1.75 5.04 -5.19 -0.03 1.73 16 9 N -0.75 -8.80 5.74 -59.76 -0.34 -9.14 16 10 C 0.16 2.34 6.66 -83.70 -0.56 1.78 16 11 C -0.15 -2.54 9.31 -39.40 -0.37 -2.91 16 12 C -0.17 -3.29 9.03 -39.46 -0.36 -3.65 16 13 C 0.10 2.19 6.69 -39.24 -0.26 1.93 16 14 O -0.32 -8.16 10.12 -19.74 -0.20 -8.36 16 15 C 0.19 5.33 4.49 36.00 0.16 5.49 16 16 C -0.52 -15.25 9.43 -34.44 -0.32 -15.58 16 17 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 20 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.12 -2.23 9.98 -39.46 -0.39 -2.62 16 25 C -0.15 -2.35 9.89 -39.40 -0.39 -2.74 16 26 C -0.10 -0.84 9.70 -39.58 -0.38 -1.22 16 27 C -0.12 -0.95 9.67 -39.58 -0.38 -1.33 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.30 7.37 -51.93 -0.38 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.41 7.88 -51.93 -0.41 0.00 16 32 H 0.06 0.30 7.41 -51.93 -0.38 -0.09 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.12 0.76 7.10 -52.48 -0.37 0.39 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.06 0.65 7.88 -51.93 -0.41 0.24 16 38 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 39 H 0.39 4.12 8.48 -40.82 -0.35 3.77 16 40 H 0.12 1.66 6.73 -52.48 -0.35 1.31 16 41 H 0.13 2.74 6.29 -52.49 -0.33 2.41 16 42 H 0.02 0.52 7.66 -51.93 -0.40 0.12 16 43 H 0.02 0.52 7.66 -51.93 -0.40 0.13 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 46 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 48 H 0.12 0.75 7.95 -52.49 -0.42 0.33 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -30.94 396.13 -11.17 -42.11 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.54 Total: 2.46 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -4.77 Total: -24.01 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.39 Total: -34.75 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.20 Total: -8.36 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.94 -11.17 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163822675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.603 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds