Wall clock time and date at job start Sat Apr 11 2020 01:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38233 * 119.99655 * 0.50733 * 6 5 4 8 8 C 1.50700 * 119.99988 * 179.72089 * 7 6 5 9 9 N 1.46500 * 109.47295 * 270.02456 * 8 7 6 10 10 C 1.39942 * 119.99835 * 180.02562 * 9 8 7 11 11 C 1.38858 * 120.02180 * 359.72159 * 10 9 8 12 12 C 1.38111 * 119.98067 * 179.74538 * 11 10 9 13 13 C 1.38697 * 120.01853 * 0.50965 * 12 11 10 14 14 O 1.36001 * 119.97891 * 179.74255 * 13 12 11 15 15 C 1.42905 * 117.00141 * 0.02562 * 14 13 12 16 16 C 1.50697 * 109.46982 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99892 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00097 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99509 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00273 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46928 * 90.00407 * 20 18 16 22 22 H 1.48500 * 109.47320 * 209.99844 * 20 18 16 23 23 H 1.48494 * 109.47375 * 330.00550 * 20 18 16 24 24 C 1.38702 * 120.03821 * 359.76978 * 13 12 11 25 25 C 1.38112 * 120.01740 * 359.97438 * 24 13 12 26 26 C 1.38237 * 120.00241 * 359.74632 * 7 6 5 27 27 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 35 35 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 36 36 H 1.08001 * 120.00097 * 180.22474 * 6 5 4 37 37 H 1.09002 * 109.47098 * 30.02090 * 8 7 6 38 38 H 1.09001 * 109.47321 * 150.01846 * 8 7 6 39 39 H 0.96994 * 119.99882 * 359.97438 * 9 8 7 40 40 H 1.08005 * 120.00789 * 0.02562 * 11 10 9 41 41 H 1.07999 * 119.98574 * 180.22811 * 12 11 10 42 42 H 1.09002 * 109.46744 * 300.00066 * 15 14 13 43 43 H 1.08994 * 109.46845 * 59.99963 * 15 14 13 44 44 H 0.97009 * 119.99955 * 180.02562 * 19 18 16 45 45 H 1.07995 * 119.98646 * 179.97438 * 24 13 12 46 46 H 1.08004 * 120.00653 * 179.97438 * 25 24 13 47 47 H 1.07997 * 119.99822 * 179.97438 * 26 7 6 48 48 H 1.07991 * 120.00142 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9532 -2.0140 -3.4879 8 6 3.4547 -2.7250 -4.7184 9 7 2.4892 -3.7524 -5.1164 10 6 2.7385 -4.5494 -6.2394 11 6 3.8982 -4.3628 -6.9800 12 6 4.1459 -5.1534 -8.0851 13 6 3.2318 -6.1263 -8.4613 14 8 3.4741 -6.9008 -9.5526 15 6 4.6896 -6.6578 -10.2637 16 6 4.7855 -7.6040 -11.4326 17 1 3.9972 -8.3196 -11.6141 18 6 5.8794 -7.5562 -12.2704 19 7 6.8395 -6.6851 -12.0490 20 14 5.9986 -8.7295 -13.7190 21 1 5.3697 -8.1083 -14.9122 22 1 7.4267 -9.0182 -14.0061 23 1 5.2941 -9.9948 -13.3905 24 6 2.0704 -6.3094 -7.7254 25 6 1.8236 -5.5232 -6.6170 26 6 3.2875 -2.4861 -2.2324 27 6 2.8271 -1.8343 -1.1037 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.0688 0.6339 -2.5850 36 1 1.8969 -0.5216 -4.5956 37 1 3.5757 -2.0066 -5.5292 38 1 4.4149 -3.1932 -4.5016 39 1 1.6775 -3.8807 -4.6012 40 1 4.6084 -3.6028 -6.6894 41 1 5.0496 -5.0109 -8.6590 42 1 4.6993 -5.6298 -10.6260 43 1 5.5379 -6.8164 -9.5978 44 1 7.6091 -6.6511 -12.6386 45 1 1.3590 -7.0669 -8.0193 46 1 0.9190 -5.6657 -6.0443 47 1 3.9081 -3.3644 -2.1334 48 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163822675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:44 Heat of formation + Delta-G solvation = -22.622653 kcal Electronic energy + Delta-G solvation = -25236.326084 eV Core-core repulsion = 21640.655283 eV Total energy + Delta-G solvation = -3595.670801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95984 -40.56167 -38.81588 -36.96649 -35.42362 -34.86902 -31.98588 -31.91185 -31.67190 -29.99843 -28.52788 -27.97522 -26.39882 -25.35304 -23.93682 -23.45475 -22.54656 -22.12979 -20.80402 -19.20020 -18.44018 -18.15265 -17.30988 -16.85950 -16.65232 -16.37767 -16.31957 -15.89102 -15.64633 -15.20289 -15.02115 -14.58916 -14.54290 -14.49728 -14.27402 -14.18366 -14.10270 -13.78099 -13.43115 -13.26234 -13.19358 -12.94778 -12.83466 -12.81252 -12.66121 -12.26352 -12.22739 -12.01164 -12.00742 -11.75062 -11.55918 -11.50134 -11.26845 -10.76215 -10.28817 -9.88374 -9.83063 -9.55410 -8.37740 -7.95276 -6.51994 0.29909 0.44780 0.49418 0.77095 1.39421 1.42755 1.54871 2.30126 2.49062 2.89741 2.95287 2.98396 3.01970 3.66258 3.81938 3.88447 3.98287 4.06603 4.10589 4.14433 4.32780 4.42369 4.44688 4.52013 4.53718 4.54476 4.64424 4.71945 4.76102 4.80776 4.81327 4.97113 5.00051 5.01533 5.05731 5.08058 5.16696 5.19308 5.27016 5.34502 5.36839 5.38918 5.48790 5.51561 5.64159 5.67689 5.74677 5.78602 5.89299 6.07882 6.39861 6.55830 6.89034 6.95900 7.21207 8.74699 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038124 B = 0.001646 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.271271 B =17008.682534 C =17379.842996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.073 4.073 5 C -0.122 4.122 6 C -0.105 4.105 7 C -0.114 4.114 8 C 0.170 3.830 9 N -0.737 5.737 10 C 0.177 3.823 11 C -0.159 4.159 12 C -0.178 4.178 13 C 0.048 3.952 14 O -0.344 6.344 15 C 0.215 3.785 16 C -0.557 4.557 17 H 0.066 0.934 18 C 0.010 3.990 19 N -0.927 5.927 20 Si 0.989 3.011 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.263 1.263 24 C -0.119 4.119 25 C -0.147 4.147 26 C -0.105 4.105 27 C -0.128 4.128 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.405 0.595 40 H 0.134 0.866 41 H 0.106 0.894 42 H -0.004 1.004 43 H -0.004 1.004 44 H 0.273 0.727 45 H 0.136 0.864 46 H 0.156 0.844 47 H 0.128 0.872 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 16.013 27.185 33.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.074 4.074 5 C -0.140 4.140 6 C -0.124 4.124 7 C -0.114 4.114 8 C 0.046 3.954 9 N -0.371 5.371 10 C 0.075 3.925 11 C -0.182 4.182 12 C -0.198 4.198 13 C 0.002 3.998 14 O -0.259 6.259 15 C 0.141 3.859 16 C -0.595 4.595 17 H 0.084 0.916 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.811 3.189 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.187 1.187 24 C -0.138 4.138 25 C -0.169 4.169 26 C -0.123 4.123 27 C -0.146 4.146 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.241 0.759 40 H 0.152 0.848 41 H 0.124 0.876 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.082 0.918 45 H 0.154 0.846 46 H 0.174 0.826 47 H 0.146 0.854 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.433 16.062 27.059 33.480 hybrid contribution 0.559 -0.378 -0.850 1.085 sum -10.874 15.684 26.209 32.421 Atomic orbital electron populations 1.21850 0.93763 1.01904 1.02523 1.20189 0.96369 0.96273 0.94777 1.21851 1.00925 0.94756 1.02531 1.20159 0.96566 0.95311 0.95316 1.21146 1.00570 1.00570 0.91734 1.21224 0.96682 0.95073 0.99381 1.19793 1.00419 0.97039 0.94190 1.20122 0.92048 0.89474 0.93728 1.44460 1.25218 1.38276 1.29112 1.17652 0.93718 0.92275 0.88840 1.20493 0.98599 1.02506 0.96590 1.21142 0.99995 0.98522 1.00095 1.19479 0.96644 0.93743 0.89937 1.86011 1.43387 1.57650 1.38839 1.20064 0.79885 0.95820 0.90122 1.21350 1.07042 1.19772 1.11314 0.91592 1.25989 0.94047 0.97788 1.01079 1.70071 1.09946 1.36702 1.39788 0.85096 0.77915 0.78365 0.77513 1.19112 1.19679 1.18748 1.20399 0.95496 1.02078 0.95872 1.20586 1.00860 0.97154 0.98268 1.21224 0.99469 0.99709 0.91906 1.21283 0.98428 0.95818 0.99076 0.91305 0.92425 0.93028 0.89906 0.92434 0.91282 0.93049 0.84858 0.85467 0.91860 0.91874 0.75893 0.84798 0.87615 0.98595 0.98594 0.91783 0.84644 0.82604 0.85450 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.00 71.98 0.65 -0.54 16 2 C -0.06 -0.54 3.09 -11.54 -0.04 -0.57 16 3 C -0.14 -1.20 9.01 71.98 0.65 -0.55 16 4 C -0.07 -0.94 4.78 -19.87 -0.09 -1.04 16 5 C -0.12 -1.65 8.71 22.27 0.19 -1.46 16 6 C -0.11 -1.61 9.70 22.27 0.22 -1.39 16 7 C -0.11 -1.87 5.25 -19.87 -0.10 -1.98 16 8 C 0.17 3.17 5.04 85.63 0.43 3.60 16 9 N -0.74 -15.31 5.74 -342.99 -1.97 -17.28 16 10 C 0.18 4.96 6.66 38.14 0.25 5.21 16 11 C -0.16 -5.26 9.31 22.39 0.21 -5.05 16 12 C -0.18 -7.47 9.03 22.35 0.20 -7.27 16 13 C 0.05 2.17 6.69 22.49 0.15 2.32 16 14 O -0.34 -18.49 10.12 -93.56 -0.95 -19.44 16 15 C 0.21 12.63 4.49 71.24 0.32 12.95 16 16 C -0.56 -33.98 9.43 25.60 0.24 -33.74 16 17 H 0.07 3.95 7.81 -2.91 -0.02 3.93 16 18 C 0.01 0.59 5.46 84.65 0.46 1.05 16 19 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 20 Si 0.99 44.59 29.54 68.60 2.03 46.62 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 C -0.12 -4.26 9.98 22.35 0.22 -4.03 16 25 C -0.15 -4.13 9.89 22.39 0.22 -3.91 16 26 C -0.10 -1.61 9.70 22.27 0.22 -1.39 16 27 C -0.13 -1.74 9.67 22.27 0.22 -1.53 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.48 7.37 -2.39 -0.02 0.46 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.68 7.88 -2.39 -0.02 0.66 16 32 H 0.06 0.48 7.41 -2.39 -0.02 0.46 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.13 1.40 7.10 -2.91 -0.02 1.38 16 36 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.06 1.21 7.88 -2.39 -0.02 1.19 16 38 H 0.06 1.21 7.90 -2.39 -0.02 1.19 16 39 H 0.41 7.10 8.48 -92.71 -0.79 6.31 16 40 H 0.13 3.82 6.73 -2.91 -0.02 3.80 16 41 H 0.11 4.87 6.29 -2.91 -0.02 4.85 16 42 H 0.00 -0.23 7.66 -2.39 -0.02 -0.25 16 43 H 0.00 -0.23 7.66 -2.39 -0.02 -0.25 16 44 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 45 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 46 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 47 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 48 H 0.14 1.38 7.95 -2.92 -0.02 1.35 16 Total: -1.00 -69.36 396.13 4.17 -65.19 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.16 Total: 19.94 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 4.62 Total: -39.31 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.68 Total: -73.00 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.95 Total: -19.44 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -69.36 4.17 -65.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163822675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.565 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds