Wall clock time and date at job start Sat Apr 11 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47286 * 2 1 4 4 N 1.46499 * 109.46963 * 120.00035 * 2 1 3 5 5 C 1.46499 * 120.00153 * 305.40837 * 4 2 1 6 6 C 1.39006 * 119.99985 * 125.40579 * 4 2 1 7 7 C 1.39136 * 119.70603 * 10.97635 * 6 4 2 8 8 C 1.38299 * 119.09467 * 180.02562 * 7 6 4 9 9 C 1.38881 * 118.50880 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.33312 * 179.97438 * 9 8 7 11 11 N 1.46503 * 109.47059 * 90.00286 * 10 9 8 12 12 C 1.38855 * 119.99831 * 179.97438 * 11 10 9 13 13 C 1.39565 * 119.84213 * 179.97438 * 12 11 10 14 14 C 1.36341 * 120.16021 * 180.25403 * 13 12 11 15 15 C 1.40891 * 119.83639 * 359.50936 * 14 13 12 16 16 C 1.41136 * 120.15505 * 180.25037 * 15 14 13 17 17 H 1.07998 * 119.99566 * 203.73791 * 16 15 14 18 18 C 1.39866 * 119.99864 * 23.74290 * 16 15 14 19 19 N 1.30900 * 120.00365 * 20.37531 * 18 16 15 20 20 Si 1.86803 * 119.99564 * 200.38451 * 18 16 15 21 21 H 1.48499 * 109.47393 * 89.99853 * 20 18 16 22 22 H 1.48503 * 109.47079 * 209.99874 * 20 18 16 23 23 H 1.48503 * 109.47033 * 329.99559 * 20 18 16 24 24 C 1.40883 * 119.68594 * 0.50919 * 15 14 13 25 25 C 1.36335 * 119.84074 * 359.74100 * 24 15 14 26 26 C 1.38021 * 119.32705 * 0.25531 * 9 8 7 27 27 N 1.31972 * 120.85786 * 359.45043 * 26 9 8 28 28 H 1.09004 * 109.46982 * 300.00167 * 1 2 3 29 29 H 1.08999 * 109.47215 * 60.00030 * 1 2 3 30 30 H 1.09005 * 109.47358 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47224 * 239.99464 * 2 1 3 32 32 H 1.08999 * 109.47081 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47227 * 299.99637 * 3 2 1 34 34 H 1.09004 * 109.47246 * 59.99995 * 3 2 1 35 35 H 1.09002 * 109.46889 * 269.99969 * 5 4 2 36 36 H 1.09000 * 109.47439 * 29.99643 * 5 4 2 37 37 H 1.09001 * 109.47662 * 150.00526 * 5 4 2 38 38 H 1.08001 * 120.45225 * 359.97438 * 7 6 4 39 39 H 1.08004 * 120.74106 * 179.97438 * 8 7 6 40 40 H 1.09001 * 109.47319 * 329.99875 * 10 9 8 41 41 H 1.09003 * 109.46890 * 209.99855 * 10 9 8 42 42 H 0.96994 * 120.00011 * 359.97438 * 11 10 9 43 43 H 1.08000 * 119.91791 * 359.97438 * 13 12 11 44 44 H 1.07995 * 120.08169 * 179.74756 * 14 13 12 45 45 H 0.97001 * 119.99903 * 179.97438 * 19 18 16 46 46 H 1.08001 * 120.08057 * 179.71558 * 24 15 14 47 47 H 1.08002 * 119.92406 * 179.97438 * 25 24 15 48 48 H 1.08003 * 119.56899 * 179.74600 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5694 -0.2629 2.5235 6 6 2.9075 -1.7518 1.0717 7 6 3.5070 -2.0085 -0.1573 8 6 4.3893 -3.0678 -0.2670 9 6 4.6441 -3.8377 0.8604 10 6 5.5980 -5.0021 0.7872 11 7 6.9540 -4.5428 1.0982 12 6 8.0103 -5.4440 1.0939 13 6 9.3009 -5.0029 1.3901 14 6 10.3436 -5.8812 1.3827 15 6 10.1143 -7.2391 1.0851 16 6 11.1880 -8.1551 1.0807 17 1 11.1175 -9.0669 0.5062 18 6 12.3431 -7.8821 1.8205 19 7 12.3008 -7.0227 2.8070 20 14 13.9465 -8.7437 1.4005 21 1 14.6948 -7.9380 0.4025 22 1 14.7652 -8.8930 2.6305 23 1 13.6540 -10.0853 0.8348 24 6 8.8089 -7.6771 0.7867 25 6 7.7766 -6.7867 0.7928 26 6 4.0104 -3.5291 2.0471 27 7 3.1772 -2.5086 2.1241 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2478 0.4984 2.9086 36 1 0.5633 0.1500 2.4512 37 1 1.5633 -1.1189 3.1983 38 1 3.2857 -1.3895 -1.0142 39 1 4.8694 -3.2913 -1.2084 40 1 5.5790 -5.4248 -0.2173 41 1 5.2981 -5.7633 1.5075 42 1 7.1139 -3.6092 1.3071 43 1 9.4746 -3.9623 1.6214 44 1 11.3424 -5.5377 1.6081 45 1 13.1019 -6.8337 3.3203 46 1 8.6266 -8.7157 0.5532 47 1 6.7754 -7.1210 0.5638 48 1 4.2026 -4.1278 2.9253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190815314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:21 Heat of formation + Delta-G solvation = 54.598783 kcal Electronic energy + Delta-G solvation = -25823.388620 eV Core-core repulsion = 22263.359143 eV Total energy + Delta-G solvation = -3560.029477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = -0.73 seconds Orbital eigenvalues (eV) -41.41076 -39.73282 -38.61078 -36.75597 -35.02764 -33.73686 -32.91098 -31.93571 -31.22652 -30.08613 -28.18299 -27.90805 -26.61412 -25.51114 -24.10997 -23.32214 -22.43260 -21.87243 -20.84785 -19.10612 -18.73167 -17.78037 -17.61909 -17.15215 -16.41846 -16.04893 -15.89328 -15.75351 -15.57290 -15.19611 -14.64185 -14.59897 -14.44206 -14.25327 -14.10676 -13.97313 -13.87806 -13.75479 -13.60189 -13.20776 -13.00164 -12.95094 -12.79770 -12.71510 -12.56462 -12.30827 -12.26321 -12.21854 -11.68826 -11.56030 -11.18675 -11.04290 -10.89251 -10.66957 -10.38876 -10.23338 -9.37155 -8.56220 -8.47560 -8.13779 -5.97327 0.29014 0.44360 1.12477 1.21504 1.41016 1.53626 1.61143 1.95351 2.28413 2.76498 2.85309 3.24902 3.54018 3.85208 3.87579 3.90252 4.04524 4.06879 4.14120 4.18681 4.31182 4.45736 4.48359 4.52704 4.64768 4.67950 4.74127 4.76756 4.80365 4.90762 4.93582 4.96150 4.99989 5.03705 5.09386 5.21022 5.28203 5.34181 5.34737 5.43878 5.45537 5.64116 5.76586 5.79027 5.95040 6.08255 6.21197 6.40878 6.43903 6.70195 6.91016 7.10436 7.14695 7.18165 7.32884 8.48632 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.036500 B = 0.001833 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.938252 B =15269.057758 C =15378.342050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 C -0.159 4.159 4 N -0.610 5.610 5 C 0.096 3.904 6 C 0.390 3.610 7 C -0.241 4.241 8 C -0.017 4.017 9 C -0.213 4.213 10 C 0.193 3.807 11 N -0.748 5.748 12 C 0.114 3.886 13 C -0.175 4.175 14 C -0.144 4.144 15 C 0.034 3.966 16 C -0.506 4.506 17 H 0.068 0.932 18 C 0.033 3.967 19 N -0.839 5.839 20 Si 0.975 3.025 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.260 1.260 24 C -0.197 4.197 25 C -0.165 4.165 26 C 0.157 3.843 27 N -0.564 5.564 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.391 0.609 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.282 0.718 46 H 0.096 0.904 47 H 0.118 0.882 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.485 16.313 -5.763 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 C -0.217 4.217 4 N -0.324 5.324 5 C -0.047 4.047 6 C 0.156 3.844 7 C -0.266 4.266 8 C -0.043 4.043 9 C -0.218 4.218 10 C 0.069 3.931 11 N -0.383 5.383 12 C 0.015 3.985 13 C -0.197 4.197 14 C -0.164 4.164 15 C 0.031 3.969 16 C -0.537 4.537 17 H 0.086 0.914 18 C -0.180 4.180 19 N -0.467 5.467 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.184 1.184 24 C -0.217 4.217 25 C -0.187 4.187 26 C 0.000 4.000 27 N -0.281 5.281 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.170 0.830 39 H 0.165 0.835 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.224 0.776 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.136 0.864 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -23.060 16.636 -4.812 28.838 hybrid contribution 1.497 -0.397 -0.375 1.593 sum -21.563 16.239 -5.187 27.488 Atomic orbital electron populations 1.22149 0.93693 1.02191 1.03613 1.21318 0.95013 0.93309 0.86921 1.22156 1.00992 0.95241 1.03340 1.46650 1.46502 1.31704 1.07522 1.21548 0.99780 0.99944 0.83383 1.18705 0.88627 0.87347 0.89747 1.21641 1.03441 1.03094 0.98388 1.21477 0.92944 0.91410 0.98487 1.20507 1.04028 1.01801 0.95484 1.19747 0.80065 0.93187 1.00124 1.44044 1.04154 1.08934 1.81132 1.17424 0.87560 0.90035 1.03472 1.20208 0.92291 0.98571 1.08593 1.20812 0.97680 0.93272 1.04652 1.17826 0.92689 0.92782 0.93568 1.19580 1.00430 1.06149 1.27584 0.91393 1.26619 1.03422 0.95441 0.92486 1.69936 1.30923 1.31393 1.14495 0.85312 0.77023 0.79326 0.78627 1.18981 1.19590 1.18409 1.20745 0.92732 0.98030 1.10210 1.20129 0.98326 0.92041 1.08212 1.22474 0.89267 0.91296 0.96972 1.67218 1.20742 1.08377 1.31774 0.91681 0.89445 0.93253 0.88702 0.93471 0.89577 0.92183 0.93851 0.89737 0.91817 0.82973 0.83531 0.92297 0.92698 0.77554 0.87863 0.88502 0.90751 0.88599 0.86434 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.06 71.98 0.65 -0.65 16 2 C 0.14 1.52 3.10 44.99 0.14 1.66 16 3 C -0.16 -1.45 9.27 71.98 0.67 -0.78 16 4 N -0.61 -10.38 2.88 -704.68 -2.03 -12.41 16 5 C 0.10 1.48 9.82 127.77 1.25 2.73 16 6 C 0.39 8.61 7.33 133.06 0.98 9.59 16 7 C -0.24 -4.67 9.24 22.50 0.21 -4.46 16 8 C -0.02 -0.36 9.85 22.44 0.22 -0.14 16 9 C -0.21 -5.08 5.27 -19.76 -0.10 -5.19 16 10 C 0.19 5.26 5.04 85.63 0.43 5.70 16 11 N -0.75 -24.89 5.69 -342.69 -1.95 -26.84 16 12 C 0.11 4.89 6.67 38.67 0.26 5.15 16 13 C -0.17 -8.29 9.82 22.15 0.22 -8.07 16 14 C -0.14 -7.89 8.65 22.48 0.19 -7.69 16 15 C 0.03 1.93 5.58 -21.27 -0.12 1.81 16 16 C -0.51 -28.82 9.02 23.38 0.21 -28.61 16 17 H 0.07 3.76 7.92 -2.91 -0.02 3.73 16 18 C 0.03 1.74 5.08 85.23 0.43 2.17 16 19 N -0.84 -46.52 11.06 21.82 0.24 -46.28 16 20 Si 0.98 40.61 29.61 68.60 2.03 42.64 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 C -0.20 -9.97 9.74 22.47 0.22 -9.76 16 25 C -0.16 -7.28 9.23 22.15 0.20 -7.08 16 26 C 0.16 3.91 10.85 84.62 0.92 4.83 16 27 N -0.56 -14.35 9.08 -193.26 -1.75 -16.10 16 28 H 0.06 0.49 6.51 -2.38 -0.02 0.47 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.10 0.98 5.51 -2.39 -0.01 0.97 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.55 7.81 -2.38 -0.02 0.53 16 35 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.89 6.16 -2.39 -0.01 0.88 16 37 H 0.06 1.20 7.24 -2.39 -0.02 1.18 16 38 H 0.15 2.15 5.98 -2.91 -0.02 2.13 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 40 H 0.06 1.57 7.88 -2.39 -0.02 1.55 16 41 H 0.05 1.52 7.87 -2.39 -0.02 1.50 16 42 H 0.39 12.27 8.46 -92.71 -0.78 11.49 16 43 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 44 H 0.10 5.58 6.19 -2.91 -0.02 5.56 16 45 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 46 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 47 H 0.12 4.43 6.68 -2.91 -0.02 4.41 16 48 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -65.72 387.69 3.70 -62.02 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.18 Total: 35.75 kcal Atomic # 6 Polarization: -45.77 SS G_CDS: 6.98 Total: -38.79 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -5.49 Total: -101.63 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -65.72 3.70 -62.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190815314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.619 kcal (2) G-P(sol) polarization free energy of solvation -65.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.73 seconds