Wall clock time and date at job start Sat Apr 11 2020 01:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46895 * 109.47510 * 2 1 4 4 C 1.46900 * 111.00193 * 288.14388 * 3 2 1 5 5 C 1.50709 * 109.46902 * 160.35487 * 4 3 2 6 6 H 1.08002 * 120.00050 * 4.65378 * 5 4 3 7 7 C 1.37873 * 119.99756 * 184.65384 * 5 4 3 8 8 N 1.31513 * 120.00034 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47088 * 59.99649 * 9 7 5 11 11 H 1.48497 * 109.47081 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46967 * 299.99608 * 9 7 5 13 13 C 1.46907 * 111.00026 * 164.19053 * 3 2 1 14 14 C 1.50701 * 109.47038 * 293.95369 * 13 3 2 15 15 N 1.30768 * 125.86434 * 270.02570 * 14 13 3 16 16 N 1.40001 * 108.22913 * 179.78966 * 15 14 13 17 17 C 1.40182 * 126.04807 * 180.33443 * 16 15 14 18 18 C 1.38838 * 120.06764 * 144.70276 * 17 16 15 19 19 C 1.38121 * 119.93388 * 179.70027 * 18 17 16 20 20 C 1.38278 * 120.06609 * 0.59581 * 19 18 17 21 21 C 1.38282 * 120.13227 * 359.68281 * 20 19 18 22 22 C 1.38119 * 120.07007 * 0.02562 * 21 20 19 23 23 C 1.35484 * 107.90314 * 0.31358 * 16 15 14 24 24 C 1.35137 * 107.71873 * 359.68826 * 23 16 15 25 25 C 1.51369 * 110.24294 * 180.21533 * 24 23 16 26 26 C 1.54434 * 105.00779 * 343.06915 * 25 24 23 27 27 C 1.51316 * 141.96873 * 180.02562 * 23 16 15 28 28 H 1.09001 * 109.47240 * 59.56735 * 1 2 3 29 29 H 1.08996 * 109.47571 * 179.56576 * 1 2 3 30 30 H 1.09003 * 109.46599 * 299.56915 * 1 2 3 31 31 H 1.09002 * 109.46919 * 240.00415 * 2 1 3 32 32 H 1.08998 * 109.47511 * 120.00655 * 2 1 3 33 33 H 1.08997 * 109.47257 * 280.35162 * 4 3 2 34 34 H 1.08995 * 109.46998 * 40.35850 * 4 3 2 35 35 H 0.97003 * 119.99902 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46656 * 173.95742 * 13 3 2 37 37 H 1.08995 * 109.47276 * 53.95780 * 13 3 2 38 38 H 1.08003 * 120.03256 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.96556 * 180.32228 * 19 18 17 40 40 H 1.08003 * 119.93548 * 179.69626 * 20 19 18 41 41 H 1.08002 * 119.96622 * 180.02562 * 21 20 19 42 42 H 1.07992 * 120.03944 * 180.02562 * 22 21 20 43 43 H 1.09000 * 110.33822 * 224.18630 * 25 24 23 44 44 H 1.09005 * 110.42143 * 101.99054 * 25 24 23 45 45 H 1.09008 * 110.92377 * 267.54865 * 26 25 24 46 46 H 1.08997 * 110.96000 * 143.91090 * 26 25 24 47 47 H 1.08999 * 110.33981 * 315.47642 * 27 23 16 48 48 H 1.09002 * 110.33556 * 77.61531 * 27 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7926 2.0237 -1.3032 5 6 1.8443 3.5214 -1.1443 6 1 2.1016 3.9546 -0.1890 7 6 1.5630 4.3387 -2.2185 8 7 1.2502 3.8112 -3.3819 9 14 1.6278 6.1952 -2.0218 10 1 2.9952 6.6019 -1.6099 11 1 1.2866 6.8421 -3.3142 12 1 0.6523 6.6174 -0.9848 13 6 3.4393 1.4413 0.3736 14 6 3.5992 1.0045 1.8071 15 7 3.5561 1.7852 2.8553 16 7 3.7426 0.9964 3.9968 17 6 3.7569 1.4534 5.3219 18 6 3.2327 0.6632 6.3360 19 6 3.2539 1.1136 7.6415 20 6 3.7852 2.3554 7.9375 21 6 4.3028 3.1472 6.9289 22 6 4.2900 2.6998 5.6222 23 6 3.9064 -0.2868 3.5942 24 6 3.8192 -0.3091 2.2458 25 6 3.9896 -1.7231 1.7332 26 6 4.6210 -2.5011 2.9085 27 6 4.1441 -1.6824 4.1283 28 1 -0.3634 0.5205 -0.8861 29 1 -0.3634 -1.0276 -0.0078 30 1 -0.3632 0.5072 0.8939 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.5652 1.7057 -2.0032 34 1 0.8141 1.7324 -1.6850 35 1 1.0527 4.3863 -4.1377 36 1 3.8040 2.4624 0.2622 37 1 4.0122 0.7781 -0.2744 38 1 2.8129 -0.3047 6.1048 39 1 2.8510 0.4970 8.4314 40 1 3.7962 2.7075 8.9584 41 1 4.7175 4.1165 7.1631 42 1 4.6947 3.3184 4.8350 43 1 4.6549 -1.7356 0.8699 44 1 3.0223 -2.1520 1.4714 45 1 5.7088 -2.4974 2.8381 46 1 4.2389 -3.5211 2.9509 47 1 4.9148 -1.6670 4.8989 48 1 3.2188 -2.0981 4.5272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266911398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:28 Heat of formation + Delta-G solvation = 98.016010 kcal Electronic energy + Delta-G solvation = -27477.407057 eV Core-core repulsion = 23919.260292 eV Total energy + Delta-G solvation = -3558.146765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.91457 -40.08334 -38.63508 -37.25045 -34.96296 -34.43610 -32.06546 -31.94526 -30.79544 -29.38887 -29.01914 -28.21634 -26.65360 -24.44494 -23.73300 -23.40383 -22.42090 -21.77145 -20.52969 -20.20654 -18.60253 -18.54556 -17.27318 -17.14081 -16.78052 -16.32280 -16.04141 -15.82064 -15.43643 -15.23024 -15.10702 -14.53908 -14.44496 -14.36264 -14.13834 -13.88385 -13.68220 -13.66237 -13.50587 -13.24247 -12.94640 -12.72324 -12.62622 -12.59296 -12.51621 -12.26732 -12.22050 -12.12953 -12.02091 -11.82676 -11.53936 -11.44927 -11.24263 -10.87359 -10.59791 -10.04634 -9.69152 -9.09085 -8.94027 -8.20629 -6.29638 -0.10473 0.30401 1.02915 1.31235 1.36523 1.39794 1.48049 1.62119 2.38978 2.70142 3.09885 3.26609 3.39690 3.53078 3.71365 3.86133 3.89919 4.05514 4.17597 4.19113 4.22394 4.27151 4.34792 4.40462 4.42343 4.52855 4.62915 4.65799 4.69803 4.80733 4.84734 4.89211 4.91147 4.98419 5.01593 5.04879 5.18361 5.18542 5.23100 5.24800 5.33272 5.34642 5.36620 5.39880 5.46765 5.62534 5.66419 5.81974 6.07766 6.30331 6.33566 6.60592 6.72046 6.84193 7.38898 8.89405 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.003720 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.561611 B = 7525.479673 C = 9313.881018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.048 3.952 3 N -0.540 5.540 4 C 0.210 3.790 5 C -0.523 4.523 6 H 0.049 0.951 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.274 1.274 13 C 0.146 3.854 14 C 0.108 3.892 15 N -0.314 5.314 16 N -0.319 5.319 17 C 0.125 3.875 18 C -0.134 4.134 19 C -0.092 4.092 20 C -0.119 4.119 21 C -0.102 4.102 22 C -0.140 4.140 23 C 0.050 3.950 24 C -0.262 4.262 25 C -0.047 4.047 26 C -0.101 4.101 27 C -0.039 4.039 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.026 0.974 32 H 0.085 0.915 33 H -0.033 1.033 34 H 0.020 0.980 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.140 0.860 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.150 0.850 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.177 -14.770 23.773 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.080 4.080 3 N -0.266 5.266 4 C 0.085 3.915 5 C -0.561 4.561 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.197 1.197 11 H -0.201 1.201 12 H -0.199 1.199 13 C 0.016 3.984 14 C -0.059 4.059 15 N -0.133 5.133 16 N -0.094 5.094 17 C 0.034 3.966 18 C -0.154 4.154 19 C -0.110 4.110 20 C -0.137 4.137 21 C -0.121 4.121 22 C -0.160 4.160 23 C -0.074 4.074 24 C -0.273 4.273 25 C -0.085 4.085 26 C -0.139 4.139 27 C -0.078 4.078 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.103 0.897 33 H -0.015 1.015 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.158 0.842 39 H 0.185 0.815 40 H 0.181 0.819 41 H 0.168 0.832 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.132 0.868 47 H 0.112 0.888 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.720 -13.228 24.417 28.572 hybrid contribution 0.411 0.631 -1.814 1.964 sum 7.131 -12.597 22.603 26.841 Atomic orbital electron populations 1.21691 0.94957 1.01746 1.00925 1.22207 0.96443 0.88919 1.00430 1.61993 1.15528 1.16929 1.32114 1.19416 0.94592 0.93518 0.84017 1.21398 1.46352 0.92272 0.96092 0.93264 1.25780 0.94837 1.03689 0.94739 1.70050 1.48245 1.37044 1.01739 0.85550 0.78758 0.79517 0.77469 1.19654 1.20065 1.19884 1.20114 0.90159 1.00402 0.87689 1.21924 0.97719 0.91721 0.94509 1.77543 1.26010 1.18614 0.91152 1.45459 1.55538 1.04335 1.04114 1.18013 1.01868 0.96650 0.80069 1.21212 1.00586 1.00986 0.92626 1.21442 0.97759 0.96616 0.95173 1.21678 0.97289 0.94079 1.00696 1.21367 0.98778 1.01027 0.90892 1.21100 1.01174 0.95264 0.98487 1.22664 1.00246 0.88659 0.95881 1.21272 1.15622 0.95874 0.94494 1.20609 1.01591 0.87231 0.99083 1.22405 1.01349 0.99323 0.90779 1.20997 1.03629 0.83605 0.99528 0.94572 0.89798 0.93713 0.95600 0.89655 1.01541 0.96208 0.92577 0.91965 0.93092 0.84217 0.81458 0.81932 0.83243 0.87506 0.91296 0.90139 0.90019 0.86758 0.88809 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.98 71.98 0.72 -4.28 16 2 C 0.05 1.86 5.55 86.30 0.48 2.34 16 3 N -0.54 -25.94 4.37 -905.38 -3.96 -29.90 16 4 C 0.21 11.85 4.59 85.56 0.39 12.25 16 5 C -0.52 -31.87 8.61 25.60 0.22 -31.65 16 6 H 0.05 3.07 7.66 -2.91 -0.02 3.05 16 7 C 0.01 0.46 5.46 84.65 0.46 0.93 16 8 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 9 Si 0.96 47.13 29.54 68.60 2.03 49.16 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 13 C 0.15 6.55 5.35 85.56 0.46 7.01 16 14 C 0.11 4.36 6.13 43.20 0.26 4.63 16 15 N -0.31 -13.35 12.33 -47.19 -0.58 -13.93 16 16 N -0.32 -10.85 3.74 -175.35 -0.66 -11.51 16 17 C 0.12 3.56 6.40 38.09 0.24 3.80 16 18 C -0.13 -2.71 9.48 22.39 0.21 -2.50 16 19 C -0.09 -1.28 10.04 22.25 0.22 -1.06 16 20 C -0.12 -1.65 10.04 22.29 0.22 -1.43 16 21 C -0.10 -1.94 10.04 22.25 0.22 -1.72 16 22 C -0.14 -3.85 9.76 22.39 0.22 -3.63 16 23 C 0.05 1.42 6.96 41.48 0.29 1.71 16 24 C -0.26 -8.25 5.48 -19.88 -0.11 -8.36 16 25 C -0.05 -1.02 6.37 30.55 0.19 -0.83 16 26 C -0.10 -1.37 7.12 31.58 0.22 -1.14 16 27 C -0.04 -0.62 6.15 30.54 0.19 -0.43 16 28 H 0.04 1.49 6.52 -2.39 -0.02 1.48 16 29 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.03 0.99 8.05 -2.39 -0.02 0.97 16 32 H 0.09 3.01 4.42 -2.39 -0.01 3.00 16 33 H -0.03 -1.97 8.00 -2.39 -0.02 -1.99 16 34 H 0.02 1.18 6.23 -2.39 -0.01 1.17 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.06 3.13 7.32 -2.39 -0.02 3.11 16 37 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 38 H 0.14 2.37 7.27 -2.91 -0.02 2.35 16 39 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 40 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.11 3.39 8.06 -2.91 -0.02 3.36 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 1.65 7.33 -2.38 -0.02 1.63 16 45 H 0.08 1.02 8.14 -2.38 -0.02 1.01 16 46 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -78.97 386.56 3.19 -75.78 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.94 Total: 12.11 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 5.13 Total: -24.36 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -4.91 Total: -112.68 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -78.97 3.19 -75.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266911398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.799 kcal (2) G-P(sol) polarization free energy of solvation -78.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds