Wall clock time and date at job start Sat Apr 11 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.46874 * 2 1 4 4 C 1.38336 * 120.45130 * 264.97777 * 3 2 1 5 5 C 1.38845 * 118.50713 * 180.02562 * 4 3 2 6 6 C 1.38069 * 119.32498 * 0.02562 * 5 4 3 7 7 N 1.31951 * 120.85202 * 359.74399 * 6 5 4 8 8 C 1.32415 * 121.62341 * 0.52548 * 7 6 5 9 9 N 1.39011 * 119.70437 * 179.75190 * 8 7 6 10 10 C 1.46495 * 119.99859 * 359.72783 * 9 8 7 11 11 C 1.50698 * 109.46886 * 179.97438 * 10 9 8 12 12 C 1.38288 * 119.92407 * 89.99908 * 11 10 9 13 13 C 1.38111 * 120.07382 * 179.69843 * 12 11 10 14 14 C 1.38906 * 119.92343 * 0.28047 * 13 12 11 15 15 N 1.39676 * 120.07171 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00261 * 359.97438 * 15 14 13 17 17 C 1.46500 * 120.00062 * 179.97438 * 15 14 13 18 18 C 1.50702 * 109.47458 * 89.99484 * 17 15 14 19 19 H 1.08007 * 119.99580 * 0.02562 * 18 17 15 20 20 C 1.37875 * 120.00251 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00212 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47312 * 89.99705 * 22 20 18 24 24 H 1.48494 * 109.47098 * 209.99537 * 22 20 18 25 25 H 1.48499 * 109.47266 * 329.99823 * 22 20 18 26 26 C 1.38908 * 119.85606 * 359.97438 * 14 13 12 27 27 C 1.38112 * 119.92096 * 0.02562 * 26 14 13 28 28 H 1.09010 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47336 * 299.99499 * 1 2 3 30 30 H 1.08998 * 109.47445 * 59.99971 * 1 2 3 31 31 H 1.09004 * 109.47071 * 240.00327 * 2 1 3 32 32 H 1.08995 * 109.47376 * 120.00564 * 2 1 3 33 33 H 1.07992 * 120.75063 * 0.04879 * 4 3 2 34 34 H 1.07991 * 120.34028 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.57316 * 179.97438 * 6 5 4 36 36 H 0.97000 * 119.99642 * 179.71842 * 9 8 7 37 37 H 1.09001 * 109.47536 * 60.00001 * 10 9 8 38 38 H 1.09003 * 109.47198 * 299.99489 * 10 9 8 39 39 H 1.08002 * 119.96530 * 359.97438 * 12 11 10 40 40 H 1.08000 * 120.03725 * 180.29787 * 13 12 11 41 41 H 1.09003 * 109.46748 * 90.00479 * 16 15 14 42 42 H 1.09000 * 109.47356 * 210.00064 * 16 15 14 43 43 H 1.09000 * 109.47257 * 330.00749 * 16 15 14 44 44 H 1.08994 * 109.47318 * 210.00032 * 17 15 14 45 45 H 1.09001 * 109.47009 * 329.99755 * 17 15 14 46 46 H 0.96992 * 120.00096 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.04186 * 180.02562 * 26 14 13 48 48 H 1.08002 * 119.96339 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3643 2.0471 -1.1880 5 6 2.8235 3.3566 -1.1410 6 6 2.9349 3.9907 0.0804 7 7 2.6065 3.3700 1.1975 8 6 2.1698 2.1199 1.1947 9 7 1.8398 1.5028 2.3958 10 6 1.9815 2.2332 3.6577 11 6 1.5607 1.3465 4.8013 12 6 2.4934 0.5415 5.4293 13 6 2.1124 -0.2677 6.4817 14 6 0.7895 -0.2766 6.9053 15 7 0.4007 -1.0942 7.9690 16 6 1.3884 -1.9439 8.6388 17 6 -0.9948 -1.1020 8.4148 18 6 -1.7590 -2.1557 7.6553 19 1 -1.2554 -2.7595 6.9149 20 6 -3.1010 -2.3489 7.9057 21 7 -3.7141 -1.6140 8.8077 22 14 -4.0480 -3.6554 6.9647 23 1 -3.9795 -4.9432 7.7012 24 1 -5.4665 -3.2376 6.8295 25 1 -3.4509 -3.8244 5.6156 26 6 -0.1459 0.5293 6.2688 27 6 0.2419 1.3360 5.2170 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2683 1.5292 -2.1308 34 1 3.0915 3.8736 -2.0504 35 1 3.2920 5.0091 0.1216 36 1 1.5156 0.5886 2.3982 37 1 1.3505 3.1217 3.6362 38 1 3.0220 2.5295 3.7911 39 1 3.5217 0.5488 5.0995 40 1 2.8422 -0.8926 6.9750 41 1 1.8398 -1.3944 9.4649 42 1 0.8975 -2.8383 9.0227 43 1 2.1626 -2.2312 7.9274 44 1 -1.0342 -1.3225 9.4815 45 1 -1.4410 -0.1250 8.2291 46 1 -4.6581 -1.7501 8.9841 47 1 -1.1751 0.5250 6.5959 48 1 -0.4847 1.9632 4.7219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269820960.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:43 Heat of formation + Delta-G solvation = 61.871380 kcal Electronic energy + Delta-G solvation = -26475.063331 eV Core-core repulsion = 22915.349217 eV Total energy + Delta-G solvation = -3559.714114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.40821 -39.10108 -36.52448 -35.20563 -34.52338 -32.78030 -31.44864 -30.54311 -30.22956 -28.63450 -27.86534 -26.06908 -24.55487 -24.24980 -22.71813 -21.92433 -21.58192 -21.36354 -19.70265 -17.92011 -16.87336 -16.59848 -16.38920 -15.63720 -15.39581 -15.00960 -14.60499 -14.48799 -14.23181 -14.09845 -13.89032 -13.78741 -13.35688 -13.28105 -13.07732 -12.97317 -12.78309 -12.39530 -12.22700 -12.16373 -11.92620 -11.47907 -11.43956 -11.31051 -11.11214 -11.00168 -10.79656 -10.75447 -10.37004 -10.18643 -9.96190 -9.83960 -9.57400 -9.41193 -8.93413 -8.56101 -8.38319 -7.58438 -6.57115 -6.08668 -4.23168 1.22456 1.45730 2.00810 2.02191 3.22132 3.29407 3.33134 3.43225 3.88673 4.06231 4.35478 4.41194 4.53870 4.70653 4.86083 4.92482 5.13512 5.16355 5.22216 5.24536 5.26750 5.31885 5.43251 5.49968 5.65840 5.70663 5.75449 5.78655 5.82133 5.92891 5.94248 6.00850 6.04910 6.11914 6.20459 6.29289 6.32787 6.34457 6.54447 6.56486 6.84453 6.92750 7.10333 7.17073 7.22806 7.28169 7.46742 7.49966 7.75177 8.08757 8.17848 8.26767 8.38847 8.85418 9.43902 10.90368 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002759 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.488762 B =10145.680792 C =11367.750269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.073 4.073 3 C -0.203 4.203 4 C -0.035 4.035 5 C -0.243 4.243 6 C 0.143 3.857 7 N -0.542 5.542 8 C 0.410 3.590 9 N -0.715 5.715 10 C 0.190 3.810 11 C -0.201 4.201 12 C -0.053 4.053 13 C -0.224 4.224 14 C 0.248 3.752 15 N -0.613 5.613 16 C 0.097 3.903 17 C 0.248 3.752 18 C -0.533 4.533 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.190 4.190 27 C -0.053 4.053 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.150 0.850 36 H 0.409 0.591 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.031 0.969 45 H 0.037 0.963 46 H 0.265 0.735 47 H 0.133 0.867 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.797 6.501 -15.517 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.211 4.211 4 C -0.061 4.061 5 C -0.266 4.266 6 C -0.015 4.015 7 N -0.260 5.260 8 C 0.173 3.827 9 N -0.347 5.347 10 C 0.067 3.933 11 C -0.204 4.204 12 C -0.073 4.073 13 C -0.247 4.247 14 C 0.140 3.860 15 N -0.317 5.317 16 C -0.047 4.047 17 C 0.128 3.872 18 C -0.571 4.571 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.212 4.212 27 C -0.072 4.072 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.168 0.832 36 H 0.247 0.753 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.151 0.849 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.621 6.920 -14.210 20.226 hybrid contribution -0.850 -1.543 -1.232 2.150 sum 11.771 5.376 -15.442 20.147 Atomic orbital electron populations 1.21779 0.94706 1.01927 1.02303 1.20313 0.96150 0.92031 1.02619 1.20149 1.09785 0.98418 0.92704 1.21153 0.93681 0.94188 0.97069 1.21720 1.09083 0.96601 0.99227 1.22359 0.93159 0.98832 0.87147 1.67244 1.18465 1.08665 1.31622 1.18289 0.89850 0.88564 0.86006 1.45051 1.70493 1.16414 1.02786 1.19901 1.00514 0.92984 0.79895 1.19353 0.94441 1.04885 1.01762 1.20571 0.97969 0.94305 0.94416 1.20572 0.94963 1.06397 1.02808 1.18005 0.92344 0.88700 0.86951 1.47166 1.10496 1.41877 1.32194 1.21502 0.92277 0.94740 0.96210 1.19317 0.74912 0.97762 0.95212 1.21552 0.94294 1.19190 1.22102 0.92265 1.24962 0.97508 0.96334 0.95237 1.69922 1.11052 1.39605 1.32716 0.86520 0.79112 0.81635 0.80356 1.20598 1.21044 1.19788 1.20901 1.00298 1.00545 0.99459 1.20716 0.94594 0.96759 0.95173 0.92207 0.92363 0.92691 0.91044 0.91369 0.85531 0.85636 0.83238 0.75345 0.91868 0.91998 0.87264 0.86725 0.94454 0.91337 0.92612 0.95106 0.94550 0.92577 0.84899 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.07 -0.69 5.51 -27.88 -0.15 -0.85 16 3 C -0.20 -2.25 5.17 -104.27 -0.54 -2.79 16 4 C -0.04 -0.34 9.83 -39.32 -0.39 -0.73 16 5 C -0.24 -2.27 10.11 -39.42 -0.40 -2.67 16 6 C 0.14 1.51 11.17 -17.56 -0.20 1.32 16 7 N -0.54 -7.15 9.57 -12.43 -0.12 -7.27 16 8 C 0.41 5.28 7.46 -155.01 -1.16 4.12 16 9 N -0.71 -9.09 5.61 -61.61 -0.35 -9.44 16 10 C 0.19 2.53 5.81 -5.20 -0.03 2.50 16 11 C -0.20 -3.00 5.25 -104.59 -0.55 -3.54 16 12 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 13 C -0.22 -3.73 9.21 -39.38 -0.36 -4.10 16 14 C 0.25 4.84 6.55 -83.79 -0.55 4.29 16 15 N -0.61 -12.73 2.99 -181.00 -0.54 -13.27 16 16 C 0.10 1.64 10.19 59.85 0.61 2.25 16 17 C 0.25 6.07 4.91 -5.19 -0.03 6.05 16 18 C -0.53 -14.23 9.39 -34.44 -0.32 -14.55 16 19 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 22 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.19 -3.69 9.21 -39.38 -0.36 -4.06 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 28 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 32 H 0.07 0.66 6.83 -51.93 -0.35 0.31 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.41 5.04 6.55 -40.82 -0.27 4.77 16 37 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.72 6.14 -52.49 -0.32 1.40 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.06 0.83 6.20 -51.93 -0.32 0.51 16 44 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 45 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.13 2.88 6.14 -52.49 -0.32 2.56 16 48 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -29.14 394.23 -11.63 -40.76 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.36 Total: 6.56 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -4.92 Total: -14.68 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.27 Total: -54.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.14 -11.63 -40.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269820960.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.635 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds