Wall clock time and date at job start Sat Apr 11 2020 01:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.46874 * 2 1 4 4 C 1.38336 * 120.45130 * 264.97777 * 3 2 1 5 5 C 1.38845 * 118.50713 * 180.02562 * 4 3 2 6 6 C 1.38069 * 119.32498 * 0.02562 * 5 4 3 7 7 N 1.31951 * 120.85202 * 359.74399 * 6 5 4 8 8 C 1.32415 * 121.62341 * 0.52548 * 7 6 5 9 9 N 1.39011 * 119.70437 * 179.75190 * 8 7 6 10 10 C 1.46495 * 119.99859 * 359.72783 * 9 8 7 11 11 C 1.50698 * 109.46886 * 179.97438 * 10 9 8 12 12 C 1.38288 * 119.92407 * 89.99908 * 11 10 9 13 13 C 1.38111 * 120.07382 * 179.69843 * 12 11 10 14 14 C 1.38906 * 119.92343 * 0.28047 * 13 12 11 15 15 N 1.39676 * 120.07171 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00261 * 359.97438 * 15 14 13 17 17 C 1.46500 * 120.00062 * 179.97438 * 15 14 13 18 18 C 1.50702 * 109.47458 * 89.99484 * 17 15 14 19 19 H 1.08007 * 119.99580 * 0.02562 * 18 17 15 20 20 C 1.37875 * 120.00251 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00212 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47312 * 89.99705 * 22 20 18 24 24 H 1.48494 * 109.47098 * 209.99537 * 22 20 18 25 25 H 1.48499 * 109.47266 * 329.99823 * 22 20 18 26 26 C 1.38908 * 119.85606 * 359.97438 * 14 13 12 27 27 C 1.38112 * 119.92096 * 0.02562 * 26 14 13 28 28 H 1.09010 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47336 * 299.99499 * 1 2 3 30 30 H 1.08998 * 109.47445 * 59.99971 * 1 2 3 31 31 H 1.09004 * 109.47071 * 240.00327 * 2 1 3 32 32 H 1.08995 * 109.47376 * 120.00564 * 2 1 3 33 33 H 1.07992 * 120.75063 * 0.04879 * 4 3 2 34 34 H 1.07991 * 120.34028 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.57316 * 179.97438 * 6 5 4 36 36 H 0.97000 * 119.99642 * 179.71842 * 9 8 7 37 37 H 1.09001 * 109.47536 * 60.00001 * 10 9 8 38 38 H 1.09003 * 109.47198 * 299.99489 * 10 9 8 39 39 H 1.08002 * 119.96530 * 359.97438 * 12 11 10 40 40 H 1.08000 * 120.03725 * 180.29787 * 13 12 11 41 41 H 1.09003 * 109.46748 * 90.00479 * 16 15 14 42 42 H 1.09000 * 109.47356 * 210.00064 * 16 15 14 43 43 H 1.09000 * 109.47257 * 330.00749 * 16 15 14 44 44 H 1.08994 * 109.47318 * 210.00032 * 17 15 14 45 45 H 1.09001 * 109.47009 * 329.99755 * 17 15 14 46 46 H 0.96992 * 120.00096 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.04186 * 180.02562 * 26 14 13 48 48 H 1.08002 * 119.96339 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3643 2.0471 -1.1880 5 6 2.8235 3.3566 -1.1410 6 6 2.9349 3.9907 0.0804 7 7 2.6065 3.3700 1.1975 8 6 2.1698 2.1199 1.1947 9 7 1.8398 1.5028 2.3958 10 6 1.9815 2.2332 3.6577 11 6 1.5607 1.3465 4.8013 12 6 2.4934 0.5415 5.4293 13 6 2.1124 -0.2677 6.4817 14 6 0.7895 -0.2766 6.9053 15 7 0.4007 -1.0942 7.9690 16 6 1.3884 -1.9439 8.6388 17 6 -0.9948 -1.1020 8.4148 18 6 -1.7590 -2.1557 7.6553 19 1 -1.2554 -2.7595 6.9149 20 6 -3.1010 -2.3489 7.9057 21 7 -3.7141 -1.6140 8.8077 22 14 -4.0480 -3.6554 6.9647 23 1 -3.9795 -4.9432 7.7012 24 1 -5.4665 -3.2376 6.8295 25 1 -3.4509 -3.8244 5.6156 26 6 -0.1459 0.5293 6.2688 27 6 0.2419 1.3360 5.2170 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2683 1.5292 -2.1308 34 1 3.0915 3.8736 -2.0504 35 1 3.2920 5.0091 0.1216 36 1 1.5156 0.5886 2.3982 37 1 1.3505 3.1217 3.6362 38 1 3.0220 2.5295 3.7911 39 1 3.5217 0.5488 5.0995 40 1 2.8422 -0.8926 6.9750 41 1 1.8398 -1.3944 9.4649 42 1 0.8975 -2.8383 9.0227 43 1 2.1626 -2.2312 7.9274 44 1 -1.0342 -1.3225 9.4815 45 1 -1.4410 -0.1250 8.2291 46 1 -4.6581 -1.7501 8.9841 47 1 -1.1751 0.5250 6.5959 48 1 -0.4847 1.9632 4.7219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269820960.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:39 Heat of formation + Delta-G solvation = 48.599138 kcal Electronic energy + Delta-G solvation = -26475.638858 eV Core-core repulsion = 22915.349217 eV Total energy + Delta-G solvation = -3560.289641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.24962 -40.46700 -37.83957 -36.30636 -35.42556 -34.73051 -32.44409 -31.95192 -31.25367 -29.78940 -29.47196 -27.35897 -25.98520 -25.19721 -24.11001 -23.08633 -22.88781 -22.16592 -21.10292 -18.83733 -18.64934 -18.10442 -17.50963 -16.95266 -16.40469 -16.34744 -15.91573 -15.58622 -15.47313 -15.30858 -15.03308 -14.74129 -14.68106 -14.45532 -14.36087 -14.07639 -13.90722 -13.65415 -13.39729 -13.27723 -13.18353 -13.03805 -12.95129 -12.69940 -12.55998 -12.28386 -12.19690 -12.05066 -11.78812 -11.76435 -11.49999 -11.05073 -10.65733 -10.55734 -10.39346 -10.18951 -9.73917 -8.46563 -8.39004 -7.87084 -6.38819 0.43818 0.64315 0.66388 0.68948 1.36118 1.37363 1.48148 2.32371 2.45260 2.59351 3.05218 3.07200 3.13375 3.69884 3.94866 3.99838 4.01760 4.12257 4.19262 4.25129 4.38705 4.39729 4.47092 4.50110 4.56712 4.61520 4.68468 4.70039 4.80412 4.87049 4.90463 4.97564 4.99529 5.05953 5.06965 5.08946 5.18976 5.27520 5.29679 5.36007 5.53611 5.54621 5.59455 5.67174 5.80655 5.85842 6.05148 6.11550 6.32310 6.46225 6.55154 6.80131 6.88430 7.33053 7.40880 8.82049 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002759 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.488762 B =10145.680792 C =11367.750269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C -0.211 4.211 4 C -0.040 4.040 5 C -0.235 4.235 6 C 0.126 3.874 7 N -0.569 5.569 8 C 0.387 3.613 9 N -0.719 5.719 10 C 0.202 3.798 11 C -0.183 4.183 12 C -0.046 4.046 13 C -0.216 4.216 14 C 0.222 3.778 15 N -0.629 5.629 16 C 0.096 3.904 17 C 0.265 3.735 18 C -0.540 4.540 19 H 0.050 0.950 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.961 3.039 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.270 1.270 26 C -0.215 4.215 27 C -0.053 4.053 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.409 0.591 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.010 0.990 45 H 0.011 0.989 46 H 0.267 0.733 47 H 0.098 0.902 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.832 6.239 -18.365 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.218 4.218 4 C -0.065 4.065 5 C -0.258 4.258 6 C -0.031 4.031 7 N -0.288 5.288 8 C 0.151 3.849 9 N -0.353 5.353 10 C 0.079 3.921 11 C -0.186 4.186 12 C -0.065 4.065 13 C -0.239 4.239 14 C 0.116 3.884 15 N -0.336 5.336 16 C -0.047 4.047 17 C 0.143 3.857 18 C -0.579 4.579 19 H 0.069 0.931 20 C -0.187 4.187 21 N -0.567 5.567 22 Si 0.786 3.214 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.195 1.195 26 C -0.238 4.238 27 C -0.072 4.072 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.189 0.811 36 H 0.247 0.753 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.028 0.972 45 H 0.029 0.971 46 H 0.076 0.924 47 H 0.116 0.884 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.696 6.675 -17.092 23.509 hybrid contribution -1.388 -1.315 -0.502 1.977 sum 13.308 5.360 -17.594 22.702 Atomic orbital electron populations 1.21746 0.95051 1.02061 1.01555 1.20316 0.95728 0.91438 1.03282 1.20362 1.09748 0.99047 0.92648 1.21549 0.92816 0.94513 0.97629 1.22082 1.07338 0.96488 0.99842 1.22844 0.93204 0.99902 0.87149 1.67209 1.19262 1.09100 1.33192 1.18501 0.91016 0.88994 0.86408 1.44869 1.71405 1.16384 1.02614 1.19703 1.00440 0.92269 0.79725 1.19525 0.93512 1.04072 1.01509 1.20908 0.99361 0.92961 0.93262 1.20804 0.93804 1.06441 1.02831 1.18253 0.93678 0.89230 0.87256 1.47018 1.09458 1.43615 1.33480 1.21638 0.91877 0.94016 0.97142 1.18801 0.77377 0.95809 0.93685 1.21757 0.94846 1.19392 1.21900 0.93145 1.25779 0.98460 0.98373 0.96075 1.70032 1.11409 1.41127 1.34095 0.85509 0.77695 0.79191 0.79034 1.19608 1.20540 1.19511 1.20767 0.98999 1.02721 1.01340 1.20801 0.95831 0.96264 0.94333 0.91628 0.94314 0.92188 0.89185 0.91853 0.82906 0.82774 0.81083 0.75329 0.92658 0.91519 0.84095 0.84573 0.92815 0.92408 0.90136 0.97189 0.97058 0.92389 0.88432 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.89 71.98 0.71 -1.95 16 2 C -0.07 -1.19 5.51 29.85 0.16 -1.03 16 3 C -0.21 -4.27 5.17 -19.63 -0.10 -4.37 16 4 C -0.04 -0.65 9.83 22.44 0.22 -0.43 16 5 C -0.23 -3.65 10.11 22.37 0.23 -3.43 16 6 C 0.13 2.40 11.17 84.63 0.95 3.34 16 7 N -0.57 -14.27 9.57 -193.25 -1.85 -16.12 16 8 C 0.39 9.48 7.46 133.05 0.99 10.47 16 9 N -0.72 -17.57 5.61 -348.82 -1.96 -19.52 16 10 C 0.20 5.15 5.81 85.63 0.50 5.65 16 11 C -0.18 -5.25 5.25 -19.84 -0.10 -5.36 16 12 C -0.05 -1.26 9.69 22.25 0.22 -1.04 16 13 C -0.22 -6.83 9.21 22.40 0.21 -6.63 16 14 C 0.22 8.78 6.55 38.21 0.25 9.03 16 15 N -0.63 -26.91 2.99 -726.57 -2.17 -29.08 16 16 C 0.10 3.23 10.19 127.77 1.30 4.53 16 17 C 0.26 13.75 4.91 85.63 0.42 14.17 16 18 C -0.54 -29.97 9.39 25.60 0.24 -29.73 16 19 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 20 C 0.01 0.69 5.46 84.65 0.46 1.15 16 21 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 22 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C -0.22 -8.83 9.21 22.40 0.21 -8.62 16 27 C -0.05 -1.79 9.69 22.25 0.22 -1.57 16 28 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.20 8.06 -2.39 -0.02 1.18 16 32 H 0.06 1.14 6.83 -2.39 -0.02 1.13 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.15 1.46 8.06 -2.92 -0.02 1.44 16 35 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.41 9.74 6.55 -92.71 -0.61 9.13 16 37 H 0.06 1.50 8.08 -2.39 -0.02 1.48 16 38 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 39 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.14 3.68 6.14 -2.91 -0.02 3.67 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 43 H 0.08 2.26 6.20 -2.39 -0.01 2.25 16 44 H 0.01 0.55 8.07 -2.39 -0.02 0.53 16 45 H 0.01 0.64 6.20 -2.39 -0.01 0.63 16 46 H 0.27 14.71 8.31 -92.71 -0.77 13.93 16 47 H 0.10 4.64 6.14 -2.91 -0.02 4.62 16 48 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -65.16 394.23 3.75 -61.41 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.35 Total: 27.31 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 7.07 Total: -15.80 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -5.69 Total: -118.61 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -65.16 3.75 -61.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269820960.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.006 kcal (2) G-P(sol) polarization free energy of solvation -65.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds