Wall clock time and date at job start Sat Apr 11 2020 01:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.34930 * 116.99545 * 2 1 4 4 O 1.21660 * 120.00515 * 359.97438 * 3 2 1 5 5 C 1.41563 * 119.99577 * 179.97438 * 3 2 1 6 6 C 1.33873 * 125.96828 * 180.02562 * 5 3 2 7 7 C 1.50698 * 122.93185 * 359.97438 * 6 5 3 8 8 O 1.33757 * 114.13701 * 179.97438 * 6 5 3 9 9 C 1.45604 * 110.37955 * 359.97438 * 8 6 5 10 10 H 1.09004 * 110.49419 * 118.66359 * 9 8 6 11 11 C 1.52999 * 110.49395 * 241.19526 * 9 8 6 12 12 N 1.46890 * 109.47341 * 293.46075 * 11 9 8 13 13 C 1.46900 * 111.00332 * 203.61716 * 12 11 9 14 14 C 1.50694 * 109.47387 * 167.20112 * 13 12 11 15 15 H 1.07996 * 120.00037 * 3.36011 * 14 13 12 16 16 C 1.37881 * 119.99824 * 183.36162 * 14 13 12 17 17 N 1.31512 * 120.00340 * 359.97438 * 16 14 13 18 18 Si 1.86811 * 119.99771 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46997 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47061 * 119.99515 * 18 16 14 21 21 H 1.48495 * 109.46600 * 239.99823 * 18 16 14 22 22 C 1.46897 * 111.00243 * 79.66417 * 12 11 9 23 23 C 1.53001 * 109.47241 * 81.46038 * 22 12 11 24 24 C 1.53002 * 109.46947 * 78.92424 * 23 22 12 25 25 C 1.52996 * 109.47240 * 198.92178 * 23 22 12 26 26 C 1.52996 * 109.47092 * 318.91955 * 23 22 12 27 27 C 1.51450 * 125.97508 * 359.71808 * 5 3 2 28 28 H 1.09008 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47250 * 60.00376 * 1 2 3 30 30 H 1.09001 * 109.47583 * 299.99750 * 1 2 3 31 31 H 1.09004 * 109.46932 * 90.00402 * 7 6 5 32 32 H 1.08999 * 109.47285 * 209.99827 * 7 6 5 33 33 H 1.09002 * 109.47233 * 330.00244 * 7 6 5 34 34 H 1.08999 * 109.46957 * 53.46362 * 11 9 8 35 35 H 1.08999 * 109.46946 * 173.45671 * 11 9 8 36 36 H 1.09000 * 109.46879 * 287.20539 * 13 12 11 37 37 H 1.09007 * 109.47025 * 47.20261 * 13 12 11 38 38 H 0.96999 * 120.00342 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.47563 * 201.46004 * 22 12 11 40 40 H 1.09006 * 109.47021 * 321.46308 * 22 12 11 41 41 H 1.08998 * 109.47365 * 21.80421 * 24 23 22 42 42 H 1.09002 * 109.47244 * 141.80724 * 24 23 22 43 43 H 1.09006 * 109.46737 * 261.80377 * 24 23 22 44 44 H 1.09003 * 109.47053 * 59.99953 * 25 23 22 45 45 H 1.09001 * 109.47357 * 179.97438 * 25 23 22 46 46 H 1.08997 * 109.47667 * 300.00217 * 25 23 22 47 47 H 1.09005 * 109.46900 * 58.87230 * 26 23 22 48 48 H 1.09002 * 109.47402 * 178.86836 * 26 23 22 49 49 H 1.08996 * 109.47402 * 298.87240 * 26 23 22 50 50 H 1.09002 * 110.65823 * 298.43979 * 27 5 3 51 51 H 1.08992 * 110.65933 * 61.55276 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0414 1.2023 0.0000 4 8 1.3788 2.2226 -0.0005 5 6 3.4551 1.2764 0.0005 6 6 4.1836 2.3995 0.0011 7 6 3.5683 3.7752 0.0006 8 8 5.5053 2.1942 0.0021 9 6 5.7968 0.7676 0.0029 10 1 6.3537 0.4914 -0.8925 11 6 6.5798 0.3816 1.2594 12 7 7.9091 1.0054 1.2191 13 6 8.8647 0.2627 2.0517 14 6 10.2649 0.7288 1.7468 15 1 10.4249 1.5369 1.0484 16 6 11.3417 0.1236 2.3594 17 7 11.1468 -0.8601 3.2102 18 14 13.0774 0.7019 1.9819 19 1 13.0258 1.8146 0.9999 20 1 13.7247 1.1742 3.2322 21 1 13.8614 -0.4237 1.4133 22 6 7.8416 2.4154 1.6255 23 6 7.8266 2.5057 3.1528 24 6 9.2483 2.3243 3.6883 25 6 7.2926 3.8752 3.5774 26 6 6.9240 1.4082 3.7198 27 6 4.4077 0.0990 0.0072 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 3.4192 4.1068 1.0282 32 1 4.2327 4.4703 -0.5127 33 1 2.6078 3.7434 -0.5139 34 1 6.0428 0.7275 2.1427 35 1 6.6880 -0.7022 1.3014 36 1 8.6438 0.4399 3.1042 37 1 8.7817 -0.8029 1.8374 38 1 11.9043 -1.2857 3.6414 39 1 8.7109 2.9471 1.2387 40 1 6.9328 2.8656 1.2260 41 1 9.9656 2.5583 2.9017 42 1 9.4060 2.9931 4.5345 43 1 9.3862 1.2921 4.0105 44 1 6.2798 4.0045 3.1959 45 1 7.2815 3.9394 4.6655 46 1 7.9356 4.6571 3.1735 47 1 7.2929 0.4334 3.4006 48 1 6.9291 1.4599 4.8086 49 1 5.9069 1.5493 3.3541 50 1 4.2714 -0.5009 0.9070 51 1 4.2725 -0.5101 -0.8865 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272594091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:47 Heat of formation + Delta-G solvation = -62.002890 kcal Electronic energy + Delta-G solvation = -30126.705705 eV Core-core repulsion = 26222.018329 eV Total energy + Delta-G solvation = -3904.687376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.209 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.40736 -40.11954 -39.04918 -36.60576 -33.94434 -33.09265 -32.90033 -31.65913 -29.00479 -28.03623 -27.60737 -26.85495 -25.94238 -24.98434 -23.83303 -22.84089 -21.61163 -20.47854 -19.59112 -18.28517 -17.61922 -16.95992 -16.62057 -16.32627 -15.68404 -15.56338 -14.96670 -14.91970 -14.35990 -14.19238 -13.83924 -13.71167 -13.40499 -13.28396 -13.14589 -13.05737 -12.59420 -12.50298 -12.41731 -12.17916 -11.81838 -11.69788 -11.58825 -11.34067 -11.17723 -10.98870 -10.93002 -10.80221 -10.79297 -10.76254 -10.61332 -10.49360 -10.35618 -10.14641 -9.74007 -9.60186 -9.34149 -9.10611 -8.37634 -8.35098 -6.97148 -6.00802 -3.95264 1.10124 2.83747 2.99769 3.16920 3.30585 3.39362 3.43168 4.37181 4.48313 4.66383 4.88280 4.98577 5.00966 5.05476 5.19537 5.26152 5.32119 5.34042 5.40815 5.43455 5.47524 5.49648 5.54729 5.66870 5.79952 5.83007 5.92176 6.01895 6.05813 6.06660 6.13506 6.18862 6.24928 6.37660 6.40088 6.44712 6.50927 6.66619 6.79650 6.85128 6.98273 7.04593 7.16532 7.29215 7.44820 7.75956 7.83832 7.84568 8.12602 8.25736 8.58222 9.05921 9.62612 11.09583 Molecular weight = 325.21amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.003265 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.572316 B = 8573.508422 C = 9037.158933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.543 3.457 4 O -0.532 6.532 5 C -0.351 4.351 6 C 0.214 3.786 7 C -0.120 4.120 8 O -0.272 6.272 9 C 0.083 3.917 10 H 0.111 0.889 11 C 0.017 3.983 12 N -0.530 5.530 13 C 0.153 3.847 14 C -0.485 4.485 15 H 0.060 0.940 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.073 3.927 23 C -0.095 4.095 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.163 4.163 27 C -0.088 4.088 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.022 0.978 38 H 0.259 0.741 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.016 0.984 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.045 0.955 46 H 0.050 0.950 47 H 0.087 0.913 48 H 0.043 0.957 49 H 0.045 0.955 50 H 0.086 0.914 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.208 4.319 -4.064 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.394 3.606 4 O -0.426 6.426 5 C -0.354 4.354 6 C 0.161 3.839 7 C -0.176 4.176 8 O -0.181 6.181 9 C 0.028 3.972 10 H 0.129 0.871 11 C -0.112 4.112 12 N -0.252 5.252 13 C 0.030 3.970 14 C -0.524 4.524 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.540 5.540 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.055 4.055 23 C -0.096 4.096 24 C -0.198 4.198 25 C -0.190 4.190 26 C -0.220 4.220 27 C -0.125 4.125 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.035 0.965 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.104 0.896 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.895 4.569 -4.449 18.059 hybrid contribution 0.544 -0.021 0.692 0.881 sum -16.351 4.548 -3.756 17.383 Atomic orbital electron populations 1.22811 0.77516 1.03267 1.02113 1.86213 1.22694 1.33189 1.84888 1.18557 0.87978 0.81172 0.72866 1.90791 1.67132 1.35394 1.49313 1.19432 0.91620 0.95831 1.28543 1.22187 0.83840 0.96111 0.81751 1.21133 1.02092 0.89483 1.04843 1.86865 1.19015 1.29578 1.82651 1.24096 0.95486 0.75401 1.02250 0.87133 1.23109 0.92734 1.00082 0.95274 1.62263 1.04948 1.02114 1.55882 1.20772 0.90112 0.93043 0.93109 1.21044 0.90142 1.17261 1.23964 0.92177 1.24866 0.98729 0.95333 0.95609 1.69932 1.30720 1.24113 1.29185 0.86606 0.85172 0.78654 0.78039 1.19772 1.21243 1.21238 1.22336 1.01234 0.90632 0.91329 1.21108 0.96784 0.93914 0.97822 1.22496 0.94701 1.02586 1.00055 1.21851 0.99738 0.97255 1.00186 1.22738 0.98032 1.01188 0.99996 1.21520 0.90615 0.96511 1.03897 0.88422 0.92453 0.92407 0.88763 0.90011 0.86995 0.91372 0.89704 0.93890 0.95976 0.93144 0.91330 0.91515 0.90055 0.96482 0.89774 0.93841 0.93577 0.93045 0.89504 0.93823 0.93593 0.89570 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.45 101.05 1.06 1.38 16 2 O -0.35 -4.31 10.26 -41.12 -0.42 -4.73 16 3 C 0.54 7.36 7.71 32.00 0.25 7.60 16 4 O -0.53 -7.78 13.79 -19.39 -0.27 -8.05 16 5 C -0.35 -4.64 6.06 -104.52 -0.63 -5.27 16 6 C 0.21 2.77 7.05 -35.84 -0.25 2.52 16 7 C -0.12 -1.27 9.63 36.00 0.35 -0.92 16 8 O -0.27 -3.91 8.06 -13.32 -0.11 -4.02 16 9 C 0.08 1.16 4.10 -26.12 -0.11 1.05 16 10 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 11 C 0.02 0.27 3.72 -3.83 -0.01 0.25 16 12 N -0.53 -10.37 4.59 -236.08 -1.08 -11.45 16 13 C 0.15 3.57 3.51 -4.98 -0.02 3.55 16 14 C -0.49 -12.47 5.45 -34.44 -0.19 -12.66 16 15 H 0.06 1.59 7.22 -52.49 -0.38 1.21 16 16 C 0.06 1.46 5.34 -17.82 -0.10 1.37 16 17 N -0.90 -25.07 13.29 55.43 0.74 -24.34 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.07 1.34 4.60 -3.83 -0.02 1.32 16 23 C -0.09 -1.67 0.77 -154.51 -0.12 -1.79 16 24 C -0.14 -2.89 7.33 37.16 0.27 -2.62 16 25 C -0.13 -1.99 8.16 37.16 0.30 -1.69 16 26 C -0.16 -2.78 6.36 37.16 0.24 -2.55 16 27 C -0.09 -1.08 6.44 -26.90 -0.17 -1.25 16 28 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.25 5.89 -51.93 -0.31 0.94 16 34 H 0.07 1.09 3.73 -51.93 -0.19 0.90 16 35 H 0.08 1.37 7.62 -51.93 -0.40 0.97 16 36 H 0.04 1.02 2.03 -51.93 -0.11 0.92 16 37 H 0.02 0.57 7.73 -51.93 -0.40 0.17 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.07 1.38 7.01 -51.93 -0.36 1.01 16 40 H 0.07 1.14 5.06 -51.93 -0.26 0.87 16 41 H 0.08 1.81 5.35 -51.93 -0.28 1.53 16 42 H 0.02 0.31 7.72 -51.93 -0.40 -0.09 16 43 H 0.08 1.97 5.27 -51.93 -0.27 1.69 16 44 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16 45 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 1.64 3.69 -51.93 -0.19 1.45 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.72 6.38 -51.93 -0.33 0.39 16 50 H 0.09 1.03 7.74 -51.93 -0.40 0.63 16 51 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -28.68 377.77 -7.70 -36.38 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.07 Total: 4.27 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 0.84 Total: -9.69 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.35 Total: -35.79 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.80 Total: -16.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.68 -7.70 -36.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272594091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.627 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds