Wall clock time and date at job start Sat Apr 11 2020 01:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.34930 * 116.99545 * 2 1 4 4 O 1.21660 * 120.00515 * 359.97438 * 3 2 1 5 5 C 1.41563 * 119.99577 * 179.97438 * 3 2 1 6 6 C 1.33873 * 125.96828 * 180.02562 * 5 3 2 7 7 C 1.50698 * 122.93185 * 359.97438 * 6 5 3 8 8 O 1.33757 * 114.13701 * 179.97438 * 6 5 3 9 9 C 1.45604 * 110.37955 * 359.97438 * 8 6 5 10 10 H 1.09004 * 110.49419 * 118.66359 * 9 8 6 11 11 C 1.52999 * 110.49395 * 241.19526 * 9 8 6 12 12 N 1.46890 * 109.47341 * 293.46075 * 11 9 8 13 13 C 1.46900 * 111.00332 * 203.61716 * 12 11 9 14 14 C 1.50694 * 109.47387 * 167.20112 * 13 12 11 15 15 H 1.07996 * 120.00037 * 3.36011 * 14 13 12 16 16 C 1.37881 * 119.99824 * 183.36162 * 14 13 12 17 17 N 1.31512 * 120.00340 * 359.97438 * 16 14 13 18 18 Si 1.86811 * 119.99771 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46997 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47061 * 119.99515 * 18 16 14 21 21 H 1.48495 * 109.46600 * 239.99823 * 18 16 14 22 22 C 1.46897 * 111.00243 * 79.66417 * 12 11 9 23 23 C 1.53001 * 109.47241 * 81.46038 * 22 12 11 24 24 C 1.53002 * 109.46947 * 78.92424 * 23 22 12 25 25 C 1.52996 * 109.47240 * 198.92178 * 23 22 12 26 26 C 1.52996 * 109.47092 * 318.91955 * 23 22 12 27 27 C 1.51450 * 125.97508 * 359.71808 * 5 3 2 28 28 H 1.09008 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47250 * 60.00376 * 1 2 3 30 30 H 1.09001 * 109.47583 * 299.99750 * 1 2 3 31 31 H 1.09004 * 109.46932 * 90.00402 * 7 6 5 32 32 H 1.08999 * 109.47285 * 209.99827 * 7 6 5 33 33 H 1.09002 * 109.47233 * 330.00244 * 7 6 5 34 34 H 1.08999 * 109.46957 * 53.46362 * 11 9 8 35 35 H 1.08999 * 109.46946 * 173.45671 * 11 9 8 36 36 H 1.09000 * 109.46879 * 287.20539 * 13 12 11 37 37 H 1.09007 * 109.47025 * 47.20261 * 13 12 11 38 38 H 0.96999 * 120.00342 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.47563 * 201.46004 * 22 12 11 40 40 H 1.09006 * 109.47021 * 321.46308 * 22 12 11 41 41 H 1.08998 * 109.47365 * 21.80421 * 24 23 22 42 42 H 1.09002 * 109.47244 * 141.80724 * 24 23 22 43 43 H 1.09006 * 109.46737 * 261.80377 * 24 23 22 44 44 H 1.09003 * 109.47053 * 59.99953 * 25 23 22 45 45 H 1.09001 * 109.47357 * 179.97438 * 25 23 22 46 46 H 1.08997 * 109.47667 * 300.00217 * 25 23 22 47 47 H 1.09005 * 109.46900 * 58.87230 * 26 23 22 48 48 H 1.09002 * 109.47402 * 178.86836 * 26 23 22 49 49 H 1.08996 * 109.47402 * 298.87240 * 26 23 22 50 50 H 1.09002 * 110.65823 * 298.43979 * 27 5 3 51 51 H 1.08992 * 110.65933 * 61.55276 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0414 1.2023 0.0000 4 8 1.3788 2.2226 -0.0005 5 6 3.4551 1.2764 0.0005 6 6 4.1836 2.3995 0.0011 7 6 3.5683 3.7752 0.0006 8 8 5.5053 2.1942 0.0021 9 6 5.7968 0.7676 0.0029 10 1 6.3537 0.4914 -0.8925 11 6 6.5798 0.3816 1.2594 12 7 7.9091 1.0054 1.2191 13 6 8.8647 0.2627 2.0517 14 6 10.2649 0.7288 1.7468 15 1 10.4249 1.5369 1.0484 16 6 11.3417 0.1236 2.3594 17 7 11.1468 -0.8601 3.2102 18 14 13.0774 0.7019 1.9819 19 1 13.0258 1.8146 0.9999 20 1 13.7247 1.1742 3.2322 21 1 13.8614 -0.4237 1.4133 22 6 7.8416 2.4154 1.6255 23 6 7.8266 2.5057 3.1528 24 6 9.2483 2.3243 3.6883 25 6 7.2926 3.8752 3.5774 26 6 6.9240 1.4082 3.7198 27 6 4.4077 0.0990 0.0072 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 3.4192 4.1068 1.0282 32 1 4.2327 4.4703 -0.5127 33 1 2.6078 3.7434 -0.5139 34 1 6.0428 0.7275 2.1427 35 1 6.6880 -0.7022 1.3014 36 1 8.6438 0.4399 3.1042 37 1 8.7817 -0.8029 1.8374 38 1 11.9043 -1.2857 3.6414 39 1 8.7109 2.9471 1.2387 40 1 6.9328 2.8656 1.2260 41 1 9.9656 2.5583 2.9017 42 1 9.4060 2.9931 4.5345 43 1 9.3862 1.2921 4.0105 44 1 6.2798 4.0045 3.1959 45 1 7.2815 3.9394 4.6655 46 1 7.9356 4.6571 3.1735 47 1 7.2929 0.4334 3.4006 48 1 6.9291 1.4599 4.8086 49 1 5.9069 1.5493 3.3541 50 1 4.2714 -0.5009 0.9070 51 1 4.2725 -0.5101 -0.8865 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272594091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:45 Heat of formation + Delta-G solvation = -78.027451 kcal Electronic energy + Delta-G solvation = -30127.400582 eV Core-core repulsion = 26222.018329 eV Total energy + Delta-G solvation = -3905.382253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.209 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.47752 -41.18777 -40.46407 -37.57014 -35.33719 -34.80015 -34.12154 -32.88962 -30.32667 -29.38067 -28.84550 -28.00870 -27.41649 -26.40290 -25.30839 -23.92787 -22.80317 -22.00249 -20.63855 -19.75878 -18.66077 -18.33273 -17.94858 -17.49971 -16.90341 -16.80330 -16.52619 -16.29584 -15.80647 -15.54013 -15.13401 -14.98221 -14.48854 -14.36151 -14.23666 -14.14433 -14.12037 -13.61691 -13.47431 -13.23940 -13.00382 -12.95726 -12.91169 -12.78108 -12.70941 -12.48673 -12.45510 -12.33263 -12.26219 -12.19148 -11.92582 -11.83430 -11.65464 -11.37816 -11.31918 -11.22321 -11.02608 -10.87414 -10.40861 -9.40781 -8.56696 -8.05744 -6.05103 0.10201 1.40175 1.44137 1.53545 1.90789 1.99683 2.18754 2.46844 3.23599 3.28216 3.57268 3.80019 3.94832 3.99030 4.07365 4.08992 4.21989 4.30494 4.36645 4.37283 4.38764 4.50865 4.61491 4.62542 4.73019 4.74686 4.76126 4.79640 4.84268 4.90324 4.95055 4.97780 5.03396 5.11483 5.15224 5.17772 5.21460 5.25909 5.29793 5.46607 5.49979 5.51977 5.58027 5.70177 5.83068 5.99902 6.00939 6.26545 6.55820 6.81339 6.87157 7.03349 7.55893 9.03572 Molecular weight = 325.21amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.003265 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.572316 B = 8573.508422 C = 9037.158933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.541 3.459 4 O -0.547 6.547 5 C -0.359 4.359 6 C 0.210 3.790 7 C -0.116 4.116 8 O -0.283 6.283 9 C 0.088 3.912 10 H 0.109 0.891 11 C 0.020 3.980 12 N -0.541 5.541 13 C 0.167 3.833 14 C -0.482 4.482 15 H 0.049 0.951 16 C 0.011 3.989 17 N -0.930 5.930 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.286 1.286 22 C 0.079 3.921 23 C -0.094 4.094 24 C -0.132 4.132 25 C -0.126 4.126 26 C -0.156 4.156 27 C -0.080 4.080 28 H 0.127 0.873 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.046 0.954 37 H -0.011 1.011 38 H 0.258 0.742 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.030 0.970 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.064 0.936 50 H 0.090 0.910 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.788 5.444 -4.299 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.393 3.607 4 O -0.443 6.443 5 C -0.362 4.362 6 C 0.158 3.842 7 C -0.171 4.171 8 O -0.192 6.192 9 C 0.033 3.967 10 H 0.127 0.873 11 C -0.108 4.108 12 N -0.263 5.263 13 C 0.042 3.958 14 C -0.521 4.521 15 H 0.068 0.932 16 C -0.186 4.186 17 N -0.572 5.572 18 Si 0.767 3.233 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.213 1.213 22 C -0.049 4.049 23 C -0.095 4.095 24 C -0.189 4.189 25 C -0.184 4.184 26 C -0.212 4.212 27 C -0.118 4.118 28 H 0.145 0.855 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.007 0.993 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.109 0.891 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.494 5.699 -4.697 19.914 hybrid contribution 0.950 -0.384 0.742 1.265 sum -17.544 5.315 -3.955 18.753 Atomic orbital electron populations 1.23102 0.75749 1.05299 1.02227 1.86200 1.24496 1.32455 1.84535 1.18619 0.88095 0.81389 0.72617 1.90781 1.67485 1.35905 1.50108 1.19549 0.91775 0.96192 1.28665 1.22527 0.83187 0.97158 0.81343 1.21177 1.01881 0.88504 1.05578 1.86830 1.19981 1.29401 1.83023 1.23929 0.96143 0.75884 1.00775 0.87292 1.23103 0.91099 0.99713 0.96845 1.62112 1.06294 1.02674 1.55245 1.20499 0.90160 0.91368 0.93782 1.21228 0.91596 1.16375 1.22927 0.93250 1.25476 1.01855 0.95586 0.95711 1.70032 1.31434 1.25333 1.30370 0.85769 0.81488 0.78182 0.77849 1.19336 1.20987 1.21266 1.22282 1.01117 0.89566 0.91962 1.21076 0.95274 0.96043 0.97115 1.22310 0.96236 1.00618 0.99724 1.21782 1.00633 0.95172 1.00836 1.22608 0.98671 0.99578 1.00331 1.21473 0.89135 0.96369 1.04790 0.85503 0.92241 0.92401 0.87730 0.88488 0.87520 0.90779 0.90150 0.93708 0.99266 0.93293 0.93479 0.89591 0.92397 0.95111 0.93097 0.92044 0.92728 0.92595 0.91842 0.93265 0.91712 0.89145 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.45 113.37 1.18 1.65 16 2 O -0.36 -8.12 10.26 -58.46 -0.60 -8.72 16 3 C 0.54 13.72 7.71 68.64 0.53 14.25 16 4 O -0.55 -15.13 13.79 19.31 0.27 -14.86 16 5 C -0.36 -8.79 6.06 -19.80 -0.12 -8.91 16 6 C 0.21 5.00 7.05 24.69 0.17 5.17 16 7 C -0.12 -2.18 9.63 71.24 0.69 -1.49 16 8 O -0.28 -7.59 8.06 -70.59 -0.57 -8.15 16 9 C 0.09 2.34 4.10 30.99 0.13 2.47 16 10 H 0.11 2.96 8.14 -2.38 -0.02 2.95 16 11 C 0.02 0.65 3.72 86.30 0.32 0.97 16 12 N -0.54 -21.26 4.59 -900.83 -4.13 -25.39 16 13 C 0.17 7.98 3.51 85.56 0.30 8.28 16 14 C -0.48 -25.41 5.45 25.60 0.14 -25.27 16 15 H 0.05 2.66 7.22 -2.91 -0.02 2.64 16 16 C 0.01 0.60 5.34 84.66 0.45 1.05 16 17 N -0.93 -53.18 13.29 21.45 0.28 -52.90 16 18 Si 0.94 43.62 29.54 68.60 2.03 45.64 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 C 0.08 2.83 4.60 86.30 0.40 3.23 16 23 C -0.09 -3.18 0.77 -52.18 -0.04 -3.22 16 24 C -0.13 -5.40 7.33 71.98 0.53 -4.87 16 25 C -0.13 -3.45 8.16 71.98 0.59 -2.86 16 26 C -0.16 -5.11 6.36 71.98 0.46 -4.65 16 27 C -0.08 -1.83 6.44 30.48 0.20 -1.64 16 28 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 2.18 5.89 -2.39 -0.01 2.16 16 34 H 0.07 2.27 3.73 -2.39 -0.01 2.26 16 35 H 0.08 2.61 7.62 -2.39 -0.02 2.59 16 36 H 0.05 2.20 2.03 -2.39 0.00 2.19 16 37 H -0.01 -0.58 7.73 -2.38 -0.02 -0.60 16 38 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.05 1.88 7.01 -2.39 -0.02 1.87 16 40 H 0.09 2.77 5.06 -2.38 -0.01 2.75 16 41 H 0.06 2.61 5.35 -2.39 -0.01 2.60 16 42 H 0.03 1.12 7.72 -2.39 -0.02 1.11 16 43 H 0.05 2.42 5.27 -2.38 -0.01 2.41 16 44 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 45 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 46 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 47 H 0.06 2.40 3.69 -2.38 -0.01 2.39 16 48 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.06 1.87 6.38 -2.39 -0.02 1.86 16 50 H 0.09 2.01 7.74 -2.39 -0.02 1.99 16 51 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -62.11 377.77 4.13 -57.98 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.94 Total: 22.25 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 5.92 Total: -15.85 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -3.85 Total: -78.29 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.90 Total: -31.73 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -62.11 4.13 -57.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272594091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.052 kcal (2) G-P(sol) polarization free energy of solvation -62.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds